Wall clock time and date at job start Wed Apr 1 2020 02:45:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50699 * 119.99604 * 2 1 4 4 N 1.46505 * 109.46747 * 122.27601 * 3 2 1 5 5 C 1.37835 * 127.16912 * 85.44070 * 4 3 2 6 6 C 1.46702 * 126.50942 * 0.02562 * 5 4 3 7 7 N 1.29705 * 126.54207 * 359.69522 * 6 5 4 8 8 N 1.39164 * 112.71344 * 179.82879 * 7 6 5 9 9 C 1.34864 * 111.29713 * 0.45612 * 8 7 6 10 10 O 1.21309 * 127.30672 * 179.73143 * 9 8 7 11 11 C 1.51445 * 126.54617 * 180.02562 * 6 5 4 12 12 N 1.31612 * 106.98101 * 179.97438 * 5 4 3 13 13 N 1.28508 * 109.88860 * 359.97438 * 12 5 4 14 14 C 1.31504 * 110.13943 * 0.02562 * 13 12 5 15 15 N 1.38267 * 126.33801 * 179.97438 * 14 13 12 16 16 C 1.46903 * 110.99748 * 295.27028 * 15 14 13 17 17 C 1.50708 * 109.46972 * 195.48014 * 16 15 14 18 18 H 1.07994 * 119.99756 * 0.02562 * 17 16 15 19 19 C 1.37875 * 119.99540 * 180.02562 * 17 16 15 20 20 N 1.31512 * 120.00433 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99693 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.46951 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47344 * 120.00115 * 21 19 17 24 24 H 1.48502 * 109.47231 * 240.00188 * 21 19 17 25 25 C 1.46892 * 111.00414 * 59.22411 * 15 14 13 26 26 C 1.52998 * 109.47237 * 70.00065 * 25 15 14 27 27 C 1.52999 * 117.50015 * 243.75235 * 26 25 15 28 28 C 1.53003 * 117.50368 * 175.09320 * 26 25 15 29 29 H 1.08002 * 119.99515 * 180.02562 * 1 2 3 30 30 H 1.07994 * 119.99903 * 0.02562 * 1 2 3 31 31 H 1.08001 * 120.00288 * 179.97438 * 2 1 3 32 32 H 1.08993 * 109.47849 * 2.28051 * 3 2 1 33 33 H 1.08994 * 109.47371 * 242.27114 * 3 2 1 34 34 H 0.96992 * 124.35213 * 180.20789 * 8 7 6 35 35 H 1.09004 * 110.57876 * 298.55331 * 11 6 5 36 36 H 1.08999 * 110.58233 * 61.29963 * 11 6 5 37 37 H 1.09002 * 109.47446 * 315.48086 * 16 15 14 38 38 H 1.08998 * 109.47048 * 75.48227 * 16 15 14 39 39 H 0.96999 * 120.00133 * 179.97438 * 20 19 17 40 40 H 1.09002 * 109.47955 * 190.00223 * 25 15 14 41 41 H 1.09007 * 109.46925 * 310.00485 * 25 15 14 42 42 H 1.08999 * 115.54906 * 29.41935 * 26 25 15 43 43 H 1.08999 * 117.50280 * 359.97438 * 27 26 25 44 44 H 1.09010 * 117.50028 * 145.01591 * 27 26 25 45 45 H 1.09003 * 117.49770 * 214.98229 * 28 26 25 46 46 H 1.09001 * 117.49490 * 359.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9464 1.3592 1.1679 5 6 4.2223 0.8481 1.2716 6 6 4.9662 0.1388 0.2249 7 7 4.5467 -0.1316 -0.9723 8 7 5.4923 -0.8145 -1.7314 9 6 6.6192 -1.0377 -1.0250 10 8 7.6212 -1.6093 -1.4004 11 6 6.3678 -0.4235 0.3382 12 7 4.6468 1.1183 2.4877 13 7 3.7375 1.7528 3.1374 14 6 2.6773 1.9269 2.3790 15 7 1.5065 2.5666 2.7420 16 6 0.8178 1.8355 3.8140 17 6 -0.6036 2.3246 3.9228 18 1 -0.9597 3.1005 3.2614 19 6 -1.4491 1.7814 4.8666 20 7 -1.0153 0.8368 5.6723 21 14 -3.2111 2.3871 5.0010 22 1 -3.4491 3.4462 3.9876 23 1 -4.1431 1.2559 4.7622 24 1 -3.4421 2.9404 6.3596 25 6 1.7669 3.9574 3.1364 26 6 2.1578 4.7728 1.9023 27 6 3.5677 5.3659 1.8650 28 6 2.3588 6.2786 2.0849 29 1 -0.5399 -0.9354 0.0004 30 1 -0.5400 0.9353 -0.0004 31 1 1.8501 -0.9353 0.0004 32 1 1.3560 2.1332 0.0409 33 1 2.6592 1.3808 -0.9096 34 1 5.3567 -1.0971 -2.6493 35 1 7.0850 0.3726 0.5379 36 1 6.4138 -1.1837 1.1180 37 1 0.8188 0.7696 3.5858 38 1 1.3337 2.0051 4.7591 39 1 -1.6101 0.4550 6.3366 40 1 0.8682 4.3828 3.5832 41 1 2.5803 3.9832 3.8616 42 1 1.7297 4.4330 0.9593 43 1 4.2167 5.1755 2.7198 44 1 4.0670 5.4165 0.8973 45 1 2.0630 6.9293 1.2619 46 1 2.2120 6.6883 3.0843 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001121663169.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:45:35 Heat of formation + Delta-G solvation = 163.186733 kcal Electronic energy + Delta-G solvation = -30583.726137 eV Core-core repulsion = 26513.445462 eV Total energy + Delta-G solvation = -4070.280675 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.69440 -41.29188 -38.02218 -37.72621 -36.01355 -35.72400 -32.95256 -32.73162 -32.20146 -29.54176 -29.30129 -27.64236 -26.86500 -25.58071 -23.67887 -22.64312 -22.19176 -21.75027 -20.80201 -20.60051 -19.66327 -19.53815 -18.05379 -17.27756 -16.63171 -16.53074 -16.04030 -15.79445 -15.67996 -15.04182 -14.91909 -14.66543 -14.59225 -14.28421 -14.10657 -13.64970 -13.50270 -13.15185 -12.59953 -12.56821 -12.38833 -12.02568 -11.92313 -11.55801 -11.44761 -11.40777 -11.37138 -11.09551 -10.89145 -10.73029 -10.50759 -10.29012 -10.27831 -10.14939 -10.03573 -9.73710 -9.66757 -9.50780 -9.41349 -8.60540 -8.42482 -7.97213 -6.16231 -4.20350 0.61895 1.89909 1.99848 2.22311 2.41529 2.65387 3.13672 3.22754 3.31075 3.33846 3.37296 3.79706 3.96478 4.21895 4.30742 4.44719 4.74608 4.91769 4.93551 4.95731 5.03754 5.12202 5.18499 5.20237 5.23853 5.30923 5.56543 5.58823 5.68064 5.74952 5.77108 5.95131 6.00204 6.08581 6.15986 6.21803 6.23915 6.28706 6.55579 6.62996 6.65679 6.78801 7.03699 7.05746 7.16715 7.52461 7.59348 7.71061 7.92231 8.25704 8.82889 8.86776 9.44340 10.94072 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.011983 B = 0.003435 C = 0.003060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2335.993369 B = 8150.544803 C = 9149.486433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.186 4.186 3 C 0.145 3.855 4 N -0.442 5.442 5 C 0.194 3.806 6 C 0.195 3.805 7 N -0.226 5.226 8 N -0.564 5.564 9 C 0.504 3.496 10 O -0.499 6.499 11 C -0.153 4.153 12 N -0.236 5.236 13 N -0.309 5.309 14 C 0.411 3.589 15 N -0.468 5.468 16 C 0.210 3.790 17 C -0.514 4.514 18 H 0.068 0.932 19 C 0.061 3.939 20 N -0.891 5.891 21 Si 0.899 3.101 22 H -0.271 1.271 23 H -0.284 1.284 24 H -0.283 1.283 25 C 0.101 3.899 26 C -0.146 4.146 27 C -0.185 4.185 28 C -0.174 4.174 29 H 0.101 0.899 30 H 0.107 0.893 31 H 0.108 0.892 32 H 0.107 0.893 33 H 0.102 0.898 34 H 0.437 0.563 35 H 0.146 0.854 36 H 0.147 0.853 37 H 0.031 0.969 38 H 0.014 0.986 39 H 0.263 0.737 40 H 0.104 0.896 41 H 0.049 0.951 42 H 0.103 0.897 43 H 0.093 0.907 44 H 0.084 0.916 45 H 0.090 0.910 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.989 2.437 -13.590 15.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.205 4.205 3 C 0.023 3.977 4 N -0.134 5.134 5 C -0.070 4.070 6 C 0.004 3.996 7 N -0.039 5.039 8 N -0.312 5.312 9 C 0.290 3.710 10 O -0.371 6.371 11 C -0.195 4.195 12 N -0.084 5.084 13 N -0.156 5.156 14 C 0.056 3.944 15 N -0.195 5.195 16 C 0.087 3.913 17 C -0.553 4.553 18 H 0.086 0.914 19 C -0.142 4.142 20 N -0.529 5.529 21 Si 0.727 3.273 22 H -0.195 1.195 23 H -0.210 1.210 24 H -0.210 1.210 25 C -0.026 4.026 26 C -0.165 4.165 27 C -0.222 4.222 28 C -0.212 4.212 29 H 0.120 0.880 30 H 0.125 0.875 31 H 0.126 0.874 32 H 0.126 0.874 33 H 0.120 0.880 34 H 0.283 0.717 35 H 0.164 0.836 36 H 0.165 0.835 37 H 0.049 0.951 38 H 0.032 0.968 39 H 0.073 0.927 40 H 0.122 0.878 41 H 0.067 0.933 42 H 0.121 0.879 43 H 0.111 0.889 44 H 0.103 0.897 45 H 0.109 0.891 46 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 8.362 2.096 -13.579 16.084 hybrid contribution -0.928 -0.252 -0.372 1.031 sum 7.433 1.844 -13.951 15.915 Atomic orbital electron populations 1.23983 0.95507 1.02736 0.95362 1.22801 0.96194 0.97255 1.04261 1.21008 0.92846 0.98311 0.85534 1.46511 1.12348 1.41539 1.13017 1.20553 0.84846 1.06627 0.94965 1.21216 0.93379 0.95067 0.89971 1.75578 1.14602 1.09341 1.04357 1.47495 1.12695 1.54911 1.16141 1.21280 0.83035 0.78993 0.87720 1.90841 1.28698 1.41743 1.75816 1.21896 0.95095 1.04266 0.98266 1.74441 1.22727 1.11367 0.99815 1.74851 0.99236 1.17287 1.24274 1.22828 0.93714 0.95412 0.82467 1.59088 1.12724 1.02551 1.45107 1.19852 0.93064 0.93052 0.85324 1.21048 0.94684 1.21707 1.17820 0.91364 1.24958 0.98899 0.94943 0.95389 1.69972 1.36158 1.26321 1.20473 0.86421 0.84175 0.78705 0.78011 1.19525 1.21003 1.20954 1.21722 1.02077 0.85188 0.93644 1.22426 0.98756 0.94700 1.00618 1.23026 0.91397 1.05220 1.02564 1.22893 1.02612 0.92839 1.02828 0.88028 0.87509 0.87396 0.87432 0.88028 0.71686 0.83611 0.83537 0.95117 0.96805 0.92686 0.87770 0.93315 0.87883 0.88864 0.89707 0.89127 0.88670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 14.32 29.01 0.42 -1.37 16 2 C -0.19 -2.44 9.85 -36.03 -0.35 -2.80 16 3 C 0.14 1.87 6.14 -5.19 -0.03 1.84 16 4 N -0.44 -6.90 2.82 -116.23 -0.33 -7.23 16 5 C 0.19 2.90 7.95 -153.73 -1.22 1.68 16 6 C 0.19 2.28 7.37 -79.71 -0.59 1.69 16 7 N -0.23 -2.42 10.70 35.11 0.38 -2.04 16 8 N -0.56 -5.24 7.11 31.48 0.22 -5.01 16 9 C 0.50 5.38 8.90 -10.50 -0.09 5.29 16 10 O -0.50 -6.82 18.03 5.53 0.10 -6.73 16 11 C -0.15 -1.46 6.91 -28.22 -0.19 -1.65 16 12 N -0.24 -4.11 12.24 32.43 0.40 -3.72 16 13 N -0.31 -6.12 11.94 30.30 0.36 -5.76 16 14 C 0.41 7.64 5.78 -318.99 -1.84 5.79 16 15 N -0.47 -9.14 4.42 -175.90 -0.78 -9.92 16 16 C 0.21 5.08 4.67 -4.97 -0.02 5.06 16 17 C -0.51 -13.03 8.39 -34.44 -0.29 -13.32 16 18 H 0.07 1.68 7.60 -52.49 -0.40 1.28 16 19 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 20 N -0.89 -25.08 13.29 55.43 0.74 -24.34 16 21 Si 0.90 20.17 29.54 -169.99 -5.02 15.15 16 22 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 23 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 24 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 25 C 0.10 1.77 5.06 -3.83 -0.02 1.76 16 26 C -0.15 -2.10 5.40 -90.62 -0.49 -2.59 16 27 C -0.19 -2.40 10.18 -26.70 -0.27 -2.68 16 28 C -0.17 -2.11 10.25 -26.69 -0.27 -2.38 16 29 H 0.10 1.21 8.06 -52.49 -0.42 0.79 16 30 H 0.11 1.38 7.83 -52.49 -0.41 0.96 16 31 H 0.11 1.43 8.06 -52.49 -0.42 1.00 16 32 H 0.11 1.39 7.76 -51.93 -0.40 0.98 16 33 H 0.10 1.12 6.96 -51.93 -0.36 0.76 16 34 H 0.44 3.02 8.96 -183.31 -1.64 1.38 16 35 H 0.15 1.17 8.14 -51.93 -0.42 0.74 16 36 H 0.15 1.24 8.14 -51.93 -0.42 0.82 16 37 H 0.03 0.83 7.98 -51.93 -0.41 0.41 16 38 H 0.01 0.37 8.06 -51.93 -0.42 -0.04 16 39 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 40 H 0.10 1.94 7.04 -51.93 -0.37 1.57 16 41 H 0.05 0.90 7.56 -51.92 -0.39 0.51 16 42 H 0.10 1.47 8.14 -51.93 -0.42 1.04 16 43 H 0.09 1.30 8.03 -51.93 -0.42 0.88 16 44 H 0.08 1.01 8.14 -51.92 -0.42 0.59 16 45 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 46 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 399.12 15.07 6.01 6.01 Total: -1.00 -30.55 399.12 -11.04 -41.59 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -7.74 Total: 4.17 kcal Atomic # 6 Polarization: 3.20 SS G_CDS: -5.38 Total: -2.18 kcal Atomic # 7 Polarization: -59.01 SS G_CDS: 0.99 Total: -58.02 kcal Atomic # 8 Polarization: -6.82 SS G_CDS: 0.10 Total: -6.73 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -30.55 -11.04 -41.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121663169.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 204.776 kcal (2) G-P(sol) polarization free energy of solvation -30.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 174.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 163.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds