Wall clock time and date at job start Wed Apr 1 2020 02:45:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50699 * 119.99604 * 2 1 4 4 N 1.46505 * 109.46747 * 122.27601 * 3 2 1 5 5 C 1.37835 * 127.16912 * 85.44070 * 4 3 2 6 6 C 1.46702 * 126.50942 * 0.02562 * 5 4 3 7 7 N 1.29705 * 126.54207 * 359.69522 * 6 5 4 8 8 N 1.39164 * 112.71344 * 179.82879 * 7 6 5 9 9 C 1.34864 * 111.29713 * 0.45612 * 8 7 6 10 10 O 1.21309 * 127.30672 * 179.73143 * 9 8 7 11 11 C 1.51445 * 126.54617 * 180.02562 * 6 5 4 12 12 N 1.31612 * 106.98101 * 179.97438 * 5 4 3 13 13 N 1.28508 * 109.88860 * 359.97438 * 12 5 4 14 14 C 1.31504 * 110.13943 * 0.02562 * 13 12 5 15 15 N 1.38267 * 126.33801 * 179.97438 * 14 13 12 16 16 C 1.46903 * 110.99748 * 295.27028 * 15 14 13 17 17 C 1.50708 * 109.46972 * 195.48014 * 16 15 14 18 18 H 1.07994 * 119.99756 * 0.02562 * 17 16 15 19 19 C 1.37875 * 119.99540 * 180.02562 * 17 16 15 20 20 N 1.31512 * 120.00433 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99693 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.46951 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47344 * 120.00115 * 21 19 17 24 24 H 1.48502 * 109.47231 * 240.00188 * 21 19 17 25 25 C 1.46892 * 111.00414 * 59.22411 * 15 14 13 26 26 C 1.52998 * 109.47237 * 70.00065 * 25 15 14 27 27 C 1.52999 * 117.50015 * 243.75235 * 26 25 15 28 28 C 1.53003 * 117.50368 * 175.09320 * 26 25 15 29 29 H 1.08002 * 119.99515 * 180.02562 * 1 2 3 30 30 H 1.07994 * 119.99903 * 0.02562 * 1 2 3 31 31 H 1.08001 * 120.00288 * 179.97438 * 2 1 3 32 32 H 1.08993 * 109.47849 * 2.28051 * 3 2 1 33 33 H 1.08994 * 109.47371 * 242.27114 * 3 2 1 34 34 H 0.96992 * 124.35213 * 180.20789 * 8 7 6 35 35 H 1.09004 * 110.57876 * 298.55331 * 11 6 5 36 36 H 1.08999 * 110.58233 * 61.29963 * 11 6 5 37 37 H 1.09002 * 109.47446 * 315.48086 * 16 15 14 38 38 H 1.08998 * 109.47048 * 75.48227 * 16 15 14 39 39 H 0.96999 * 120.00133 * 179.97438 * 20 19 17 40 40 H 1.09002 * 109.47955 * 190.00223 * 25 15 14 41 41 H 1.09007 * 109.46925 * 310.00485 * 25 15 14 42 42 H 1.08999 * 115.54906 * 29.41935 * 26 25 15 43 43 H 1.08999 * 117.50280 * 359.97438 * 27 26 25 44 44 H 1.09010 * 117.50028 * 145.01591 * 27 26 25 45 45 H 1.09003 * 117.49770 * 214.98229 * 28 26 25 46 46 H 1.09001 * 117.49490 * 359.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9464 1.3592 1.1679 5 6 4.2223 0.8481 1.2716 6 6 4.9662 0.1388 0.2249 7 7 4.5467 -0.1316 -0.9723 8 7 5.4923 -0.8145 -1.7314 9 6 6.6192 -1.0377 -1.0250 10 8 7.6212 -1.6093 -1.4004 11 6 6.3678 -0.4235 0.3382 12 7 4.6468 1.1183 2.4877 13 7 3.7375 1.7528 3.1374 14 6 2.6773 1.9269 2.3790 15 7 1.5065 2.5666 2.7420 16 6 0.8178 1.8355 3.8140 17 6 -0.6036 2.3246 3.9228 18 1 -0.9597 3.1005 3.2614 19 6 -1.4491 1.7814 4.8666 20 7 -1.0153 0.8368 5.6723 21 14 -3.2111 2.3871 5.0010 22 1 -3.4491 3.4462 3.9876 23 1 -4.1431 1.2559 4.7622 24 1 -3.4421 2.9404 6.3596 25 6 1.7669 3.9574 3.1364 26 6 2.1578 4.7728 1.9023 27 6 3.5677 5.3659 1.8650 28 6 2.3588 6.2786 2.0849 29 1 -0.5399 -0.9354 0.0004 30 1 -0.5400 0.9353 -0.0004 31 1 1.8501 -0.9353 0.0004 32 1 1.3560 2.1332 0.0409 33 1 2.6592 1.3808 -0.9096 34 1 5.3567 -1.0971 -2.6493 35 1 7.0850 0.3726 0.5379 36 1 6.4138 -1.1837 1.1180 37 1 0.8188 0.7696 3.5858 38 1 1.3337 2.0051 4.7591 39 1 -1.6101 0.4550 6.3366 40 1 0.8682 4.3828 3.5832 41 1 2.5803 3.9832 3.8616 42 1 1.7297 4.4330 0.9593 43 1 4.2167 5.1755 2.7198 44 1 4.0670 5.4165 0.8973 45 1 2.0630 6.9293 1.2619 46 1 2.2120 6.6883 3.0843 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121663169.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:45:34 Heat of formation + Delta-G solvation = 145.615226 kcal Electronic energy + Delta-G solvation = -30584.488095 eV Core-core repulsion = 26513.445462 eV Total energy + Delta-G solvation = -4071.042633 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.01656 -42.20761 -39.34588 -38.71668 -37.21421 -37.04089 -34.70648 -33.95940 -33.34441 -30.65033 -30.41685 -29.38520 -28.04447 -27.09470 -24.84034 -24.39446 -23.20528 -22.71760 -22.10303 -21.70903 -20.92893 -20.62679 -18.96222 -18.82133 -18.06845 -17.69131 -17.22438 -17.16512 -16.88633 -16.54650 -15.93855 -15.81075 -15.75584 -15.50924 -15.37268 -15.05891 -14.59170 -14.32563 -14.16899 -13.75489 -13.56818 -13.41494 -13.36701 -12.83170 -12.81668 -12.67083 -12.52044 -12.45941 -12.36794 -12.19167 -12.11438 -11.80341 -11.46382 -11.27498 -11.23558 -11.19193 -10.87497 -10.81965 -10.61562 -10.49393 -9.69398 -9.58679 -8.19536 -6.30929 -0.43355 0.75140 0.91818 1.29004 1.32337 1.45859 1.47189 1.55357 1.60579 1.86361 2.35272 2.44022 2.81842 2.91789 3.01282 3.15622 3.36507 3.67466 3.80469 3.88655 3.91929 4.04473 4.10958 4.17436 4.21465 4.25905 4.40370 4.43757 4.56572 4.70035 4.74692 4.78399 4.81872 4.85366 4.97858 5.01492 5.06936 5.13755 5.26806 5.33479 5.45713 5.47391 5.60877 5.67602 5.74198 5.95085 5.99184 6.13248 6.49739 6.70852 6.82731 7.38742 7.49061 8.92025 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.011983 B = 0.003435 C = 0.003060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2335.993369 B = 8150.544803 C = 9149.486433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.192 4.192 3 C 0.143 3.857 4 N -0.438 5.438 5 C 0.219 3.781 6 C 0.182 3.818 7 N -0.211 5.211 8 N -0.549 5.549 9 C 0.510 3.490 10 O -0.527 6.527 11 C -0.147 4.147 12 N -0.259 5.259 13 N -0.342 5.342 14 C 0.392 3.608 15 N -0.458 5.458 16 C 0.234 3.766 17 C -0.515 4.515 18 H 0.077 0.923 19 C 0.008 3.992 20 N -0.933 5.933 21 Si 0.969 3.031 22 H -0.255 1.255 23 H -0.282 1.282 24 H -0.283 1.283 25 C 0.105 3.895 26 C -0.158 4.158 27 C -0.180 4.180 28 C -0.154 4.154 29 H 0.110 0.890 30 H 0.107 0.893 31 H 0.108 0.892 32 H 0.109 0.891 33 H 0.125 0.875 34 H 0.450 0.550 35 H 0.165 0.835 36 H 0.160 0.840 37 H -0.004 1.004 38 H -0.025 1.025 39 H 0.264 0.736 40 H 0.089 0.911 41 H 0.031 0.969 42 H 0.109 0.891 43 H 0.078 0.922 44 H 0.101 0.899 45 H 0.115 0.885 46 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.720 3.437 -16.045 18.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.211 4.211 3 C 0.023 3.977 4 N -0.129 5.129 5 C -0.047 4.047 6 C -0.010 4.010 7 N -0.024 5.024 8 N -0.299 5.299 9 C 0.297 3.703 10 O -0.402 6.402 11 C -0.188 4.188 12 N -0.105 5.105 13 N -0.189 5.189 14 C 0.035 3.965 15 N -0.184 5.184 16 C 0.109 3.891 17 C -0.554 4.554 18 H 0.095 0.905 19 C -0.191 4.191 20 N -0.573 5.573 21 Si 0.794 3.206 22 H -0.179 1.179 23 H -0.208 1.208 24 H -0.209 1.209 25 C -0.022 4.022 26 C -0.177 4.177 27 C -0.217 4.217 28 C -0.191 4.191 29 H 0.129 0.871 30 H 0.125 0.875 31 H 0.126 0.874 32 H 0.127 0.873 33 H 0.143 0.857 34 H 0.298 0.702 35 H 0.182 0.818 36 H 0.177 0.823 37 H 0.014 0.986 38 H -0.007 1.007 39 H 0.073 0.927 40 H 0.108 0.892 41 H 0.049 0.951 42 H 0.127 0.873 43 H 0.097 0.903 44 H 0.119 0.881 45 H 0.133 0.867 46 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 8.095 3.117 -16.075 18.266 hybrid contribution -0.761 -0.637 0.286 1.033 sum 7.334 2.480 -15.789 17.585 Atomic orbital electron populations 1.24126 0.95632 1.03243 0.94863 1.22832 0.96326 0.97303 1.04664 1.21229 0.92958 0.98304 0.85220 1.46633 1.12827 1.40707 1.12770 1.20966 0.84359 1.04546 0.94792 1.20990 0.94270 0.95968 0.89735 1.75537 1.14724 1.08140 1.04004 1.47496 1.11948 1.53919 1.16538 1.21315 0.82657 0.78324 0.87984 1.90842 1.29806 1.43133 1.76392 1.21962 0.93971 1.04922 0.97989 1.74364 1.22660 1.12591 1.00933 1.74749 1.00137 1.18322 1.25672 1.22628 0.93324 0.96879 0.83622 1.58960 1.13517 1.02972 1.42922 1.19319 0.93156 0.91597 0.85056 1.21323 0.95034 1.21422 1.17599 0.90506 1.25869 1.03328 0.94959 0.94971 1.70118 1.37838 1.27924 1.21416 0.85327 0.78676 0.78429 0.78163 1.17858 1.20797 1.20924 1.21663 1.00719 0.84608 0.95205 1.22229 1.00399 0.96055 0.98995 1.23010 0.90837 1.05024 1.02827 1.23011 1.00819 0.91414 1.03889 0.87130 0.87522 0.87394 0.87327 0.85683 0.70186 0.81778 0.82314 0.98564 1.00703 0.92688 0.89238 0.95089 0.87331 0.90305 0.88109 0.86651 0.88556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.52 14.32 67.77 0.97 -2.55 16 2 C -0.19 -4.84 9.85 25.64 0.25 -4.59 16 3 C 0.14 3.50 6.14 85.63 0.53 4.03 16 4 N -0.44 -13.48 2.82 -521.64 -1.47 -14.96 16 5 C 0.22 6.38 7.95 135.69 1.08 7.46 16 6 C 0.18 3.88 7.37 45.32 0.33 4.21 16 7 N -0.21 -3.96 10.70 -42.82 -0.46 -4.42 16 8 N -0.55 -8.71 7.11 -172.64 -1.23 -9.94 16 9 C 0.51 9.73 8.90 87.94 0.78 10.51 16 10 O -0.53 -13.50 18.03 -3.12 -0.06 -13.55 16 11 C -0.15 -2.47 6.91 29.63 0.20 -2.26 16 12 N -0.26 -9.13 12.24 -51.32 -0.63 -9.76 16 13 N -0.34 -14.05 11.94 -58.06 -0.69 -14.74 16 14 C 0.39 14.96 5.78 260.15 1.50 16.46 16 15 N -0.46 -18.51 4.42 -710.44 -3.14 -21.65 16 16 C 0.23 11.91 4.67 85.56 0.40 12.31 16 17 C -0.52 -26.72 8.39 25.60 0.21 -26.51 16 18 H 0.08 3.78 7.60 -2.91 -0.02 3.76 16 19 C 0.01 0.40 5.46 84.65 0.46 0.86 16 20 N -0.93 -54.22 13.29 21.45 0.28 -53.93 16 21 Si 0.97 41.44 29.54 68.60 2.03 43.46 16 22 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 23 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 24 H -0.28 -12.04 7.11 99.48 0.71 -11.34 16 25 C 0.10 3.81 5.06 86.30 0.44 4.25 16 26 C -0.16 -4.40 5.40 -10.79 -0.06 -4.46 16 27 C -0.18 -4.43 10.18 30.62 0.31 -4.12 16 28 C -0.15 -3.40 10.25 30.62 0.31 -3.09 16 29 H 0.11 2.53 8.06 -2.91 -0.02 2.50 16 30 H 0.11 2.66 7.83 -2.91 -0.02 2.63 16 31 H 0.11 2.72 8.06 -2.91 -0.02 2.69 16 32 H 0.11 2.66 7.76 -2.39 -0.02 2.64 16 33 H 0.13 2.44 6.96 -2.39 -0.02 2.42 16 34 H 0.45 4.94 8.96 -213.93 -1.92 3.02 16 35 H 0.17 2.22 8.14 -2.38 -0.02 2.20 16 36 H 0.16 2.36 8.14 -2.39 -0.02 2.34 16 37 H 0.00 -0.22 7.98 -2.39 -0.02 -0.23 16 38 H -0.02 -1.44 8.06 -2.39 -0.02 -1.46 16 39 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 40 H 0.09 3.44 7.04 -2.39 -0.02 3.43 16 41 H 0.03 1.21 7.56 -2.38 -0.02 1.20 16 42 H 0.11 2.92 8.14 -2.39 -0.02 2.90 16 43 H 0.08 2.18 8.03 -2.39 -0.02 2.16 16 44 H 0.10 2.16 8.14 -2.38 -0.02 2.14 16 45 H 0.12 2.03 8.14 -2.39 -0.02 2.01 16 46 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 Total: -1.00 -68.25 399.12 1.47 -66.79 By element: Atomic # 1 Polarization: 21.08 SS G_CDS: -0.90 Total: 20.18 kcal Atomic # 6 Polarization: 4.79 SS G_CDS: 7.73 Total: 12.53 kcal Atomic # 7 Polarization: -122.07 SS G_CDS: -7.34 Total: -129.40 kcal Atomic # 8 Polarization: -13.50 SS G_CDS: -0.06 Total: -13.55 kcal Atomic # 14 Polarization: 41.44 SS G_CDS: 2.03 Total: 43.46 kcal Total: -68.25 1.47 -66.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121663169.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 212.402 kcal (2) G-P(sol) polarization free energy of solvation -68.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 144.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.787 kcal (6) G-S(sol) free energy of system = (1) + (5) 145.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds