Wall clock time and date at job start Wed Apr 1 2020 02:44:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50696 * 120.00045 * 2 1 4 4 N 1.46507 * 109.46553 * 125.59449 * 3 2 1 5 5 C 1.37835 * 127.16431 * 275.63502 * 4 3 2 6 6 C 1.46711 * 126.51363 * 359.97438 * 5 4 3 7 7 N 1.29694 * 126.53940 * 359.69191 * 6 5 4 8 8 N 1.39163 * 112.71096 * 179.88573 * 7 6 5 9 9 C 1.34855 * 111.29952 * 0.39419 * 8 7 6 10 10 O 1.21314 * 127.31045 * 179.76633 * 9 8 7 11 11 C 1.51438 * 126.54331 * 179.97438 * 6 5 4 12 12 N 1.31617 * 106.98114 * 180.02562 * 5 4 3 13 13 N 1.28515 * 109.88209 * 359.74508 * 12 5 4 14 14 C 1.31502 * 110.14186 * 0.42178 * 13 12 5 15 15 N 1.38268 * 126.33773 * 179.85713 * 14 13 12 16 16 C 1.46843 * 111.00432 * 102.56269 * 15 14 13 17 17 C 1.53036 * 109.52474 * 174.16377 * 16 15 14 18 18 C 1.53117 * 109.28302 * 59.17498 * 17 16 15 19 19 C 1.53122 * 109.16051 * 302.35117 * 18 17 16 20 20 H 1.09001 * 109.49529 * 297.66879 * 19 18 17 21 21 C 1.50699 * 109.50180 * 177.59510 * 19 18 17 22 22 H 1.08007 * 119.99597 * 240.07757 * 21 19 18 23 23 C 1.37873 * 120.00419 * 60.34870 * 21 19 18 24 24 N 1.31515 * 119.99636 * 359.72634 * 23 21 19 25 25 Si 1.86797 * 120.00200 * 179.72406 * 23 21 19 26 26 H 1.48504 * 109.47219 * 0.02562 * 25 23 21 27 27 H 1.48502 * 109.47019 * 120.00111 * 25 23 21 28 28 H 1.48497 * 109.47312 * 240.00112 * 25 23 21 29 29 C 1.46854 * 110.99402 * 338.30575 * 15 14 13 30 30 H 1.08003 * 120.00103 * 359.97438 * 1 2 3 31 31 H 1.08000 * 120.00642 * 179.97438 * 1 2 3 32 32 H 1.08004 * 119.99211 * 180.02562 * 2 1 3 33 33 H 1.08998 * 109.47173 * 5.59925 * 3 2 1 34 34 H 1.09000 * 109.47010 * 245.58842 * 3 2 1 35 35 H 0.97003 * 124.35480 * 180.16054 * 8 7 6 36 36 H 1.09003 * 110.58751 * 298.51609 * 11 6 5 37 37 H 1.09000 * 110.58444 * 61.26726 * 11 6 5 38 38 H 1.08999 * 109.46396 * 54.14456 * 16 15 14 39 39 H 1.09001 * 109.45844 * 294.17764 * 16 15 14 40 40 H 1.09004 * 109.50083 * 299.23445 * 17 16 15 41 41 H 1.09005 * 109.50153 * 179.12113 * 17 16 15 42 42 H 1.08995 * 109.52368 * 182.43956 * 18 17 16 43 43 H 1.09005 * 109.57361 * 62.28153 * 18 17 16 44 44 H 0.97001 * 119.99878 * 179.97438 * 24 23 21 45 45 H 1.09002 * 109.42691 * 65.80910 * 29 15 14 46 46 H 1.09000 * 109.49634 * 305.84133 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 3.0039 1.3259 1.1232 5 6 2.7358 1.6836 2.4271 6 6 1.4426 2.1216 2.9639 7 7 0.3354 2.2514 2.3010 8 7 -0.7201 2.6846 3.0977 9 6 -0.3258 2.8728 4.3735 10 8 -1.0053 3.2490 5.3054 11 6 1.1473 2.5143 4.3963 12 7 3.8607 1.5587 3.0990 13 7 4.7941 1.1491 2.3163 14 6 4.3274 0.9957 1.0965 15 7 5.0440 0.5723 -0.0077 16 6 4.7546 -0.8341 -0.3153 17 6 5.4488 -1.2251 -1.6219 18 6 6.9584 -1.0156 -1.4748 19 6 7.2294 0.4459 -1.1069 20 1 6.8818 1.0940 -1.9114 21 6 8.7088 0.6472 -0.9023 22 1 9.0805 0.9875 0.0530 23 6 9.5875 0.4023 -1.9362 24 7 9.1349 -0.0122 -3.0994 25 14 11.4205 0.6592 -1.6849 26 1 11.6694 1.1250 -0.2969 27 1 12.1357 -0.6223 -1.9121 28 1 11.9139 1.6784 -2.6456 29 6 6.4836 0.7895 0.1845 30 1 -0.5400 0.9353 0.0004 31 1 -0.5401 -0.9352 -0.0004 32 1 1.8499 -0.9354 -0.0004 33 1 1.3595 2.1311 0.1003 34 1 2.6130 1.4073 -0.9358 35 1 -1.6227 2.8353 2.7760 36 1 1.3273 1.6754 5.0686 37 1 1.7487 3.3748 4.6896 38 1 3.6782 -0.9686 -0.4215 39 1 5.1213 -1.4656 0.4939 40 1 5.0725 -0.6032 -2.4341 41 1 5.2466 -2.2735 -1.8417 42 1 7.4525 -1.2517 -2.4172 43 1 7.3426 -1.6661 -0.6890 44 1 9.7530 -0.1841 -3.8270 45 1 6.8420 0.1508 0.9918 46 1 6.6630 1.8337 0.4407 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001121663201.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:44:51 Heat of formation + Delta-G solvation = 132.273501 kcal Electronic energy + Delta-G solvation = -30296.700538 eV Core-core repulsion = 26225.079365 eV Total energy + Delta-G solvation = -4071.621173 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.98606 -41.43092 -38.52940 -37.87923 -36.35418 -34.11260 -33.12710 -32.65696 -31.78890 -30.10172 -29.67162 -29.00644 -27.06042 -25.16897 -24.03118 -23.83877 -22.00766 -21.68121 -21.18801 -20.49833 -19.88311 -18.74721 -18.17891 -17.58303 -16.80946 -16.65751 -16.17898 -15.86487 -15.66313 -15.14213 -15.00803 -14.77730 -14.49302 -14.17751 -14.11240 -13.63485 -13.33827 -13.02663 -12.74455 -12.69370 -12.60144 -12.57248 -12.06679 -11.84996 -11.69465 -11.60923 -11.01141 -10.89848 -10.74847 -10.68436 -10.43519 -10.34415 -10.26785 -10.14722 -9.96079 -9.85991 -9.65565 -9.33032 -9.11240 -8.79531 -8.38783 -8.05801 -6.05243 -4.10886 0.44104 1.58521 1.77566 2.07171 2.19482 2.29246 2.89458 3.19474 3.28083 3.36680 3.41427 3.64346 3.90099 4.15267 4.41861 4.49033 4.50726 4.80452 4.80521 4.89478 5.04509 5.14787 5.26054 5.28796 5.38810 5.45941 5.52015 5.58555 5.73011 5.76529 5.96468 6.08961 6.19581 6.24019 6.28064 6.32075 6.42458 6.48466 6.61179 6.75404 6.90058 6.91916 7.16221 7.26593 7.40313 7.50962 7.68486 7.92127 8.04051 8.35582 8.60692 8.92732 9.54287 11.01211 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.020593 B = 0.002594 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.375355 B =10791.959655 C =11799.078991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.183 4.183 3 C 0.138 3.862 4 N -0.455 5.455 5 C 0.201 3.799 6 C 0.192 3.808 7 N -0.223 5.223 8 N -0.564 5.564 9 C 0.504 3.496 10 O -0.496 6.496 11 C -0.153 4.153 12 N -0.231 5.231 13 N -0.308 5.308 14 C 0.398 3.602 15 N -0.460 5.460 16 C 0.066 3.934 17 C -0.116 4.116 18 C -0.115 4.115 19 C 0.055 3.945 20 H 0.036 0.964 21 C -0.513 4.513 22 H 0.058 0.942 23 C 0.064 3.936 24 N -0.889 5.889 25 Si 0.892 3.108 26 H -0.272 1.272 27 H -0.284 1.284 28 H -0.284 1.284 29 C 0.081 3.919 30 H 0.105 0.895 31 H 0.101 0.899 32 H 0.115 0.885 33 H 0.106 0.894 34 H 0.114 0.886 35 H 0.438 0.562 36 H 0.147 0.853 37 H 0.148 0.852 38 H 0.063 0.937 39 H 0.044 0.956 40 H 0.065 0.935 41 H 0.057 0.943 42 H 0.096 0.904 43 H 0.036 0.964 44 H 0.260 0.740 45 H 0.048 0.952 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.711 0.593 5.965 20.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.202 4.202 3 C 0.016 3.984 4 N -0.148 5.148 5 C -0.063 4.063 6 C 0.001 3.999 7 N -0.037 5.037 8 N -0.312 5.312 9 C 0.290 3.710 10 O -0.368 6.368 11 C -0.195 4.195 12 N -0.077 5.077 13 N -0.156 5.156 14 C 0.042 3.958 15 N -0.185 5.185 16 C -0.061 4.061 17 C -0.154 4.154 18 C -0.153 4.153 19 C 0.036 3.964 20 H 0.054 0.946 21 C -0.552 4.552 22 H 0.076 0.924 23 C -0.137 4.137 24 N -0.528 5.528 25 Si 0.720 3.280 26 H -0.197 1.197 27 H -0.211 1.211 28 H -0.211 1.211 29 C -0.044 4.044 30 H 0.123 0.877 31 H 0.120 0.880 32 H 0.132 0.868 33 H 0.124 0.876 34 H 0.132 0.868 35 H 0.284 0.716 36 H 0.164 0.836 37 H 0.165 0.835 38 H 0.082 0.918 39 H 0.062 0.938 40 H 0.083 0.917 41 H 0.075 0.925 42 H 0.114 0.886 43 H 0.055 0.945 44 H 0.070 0.930 45 H 0.066 0.934 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -19.713 0.995 6.178 20.682 hybrid contribution 0.119 -0.181 -0.024 0.218 sum -19.594 0.814 6.154 20.554 Atomic orbital electron populations 1.23935 0.95451 1.02419 0.96937 1.23066 0.96363 0.97752 1.02977 1.21108 0.91354 0.97681 0.88282 1.46340 1.09584 1.49628 1.09294 1.20561 0.93457 1.10250 0.82044 1.21156 0.88990 0.96397 0.93323 1.75511 0.95472 1.12733 1.19961 1.47487 1.11325 1.64715 1.07692 1.21261 0.89997 0.76767 0.82953 1.90854 1.61872 1.45478 1.38620 1.21896 0.95258 1.07088 0.95244 1.74480 0.94840 1.13372 1.25025 1.74927 1.22186 1.20781 0.97730 1.22951 0.81931 0.98891 0.91986 1.58797 1.11377 1.20739 1.27541 1.22309 0.99651 0.84605 0.99501 1.21723 0.99206 0.99619 0.94871 1.21730 0.90801 0.99155 1.03604 1.18745 0.93830 0.93103 0.90713 0.94574 1.21110 0.90827 1.45012 0.98213 0.92359 1.24911 0.98792 0.94961 0.95082 1.69883 1.34437 1.45952 1.02514 0.86534 0.85382 0.77769 0.78335 1.19665 1.21063 1.21055 1.22472 0.79206 1.01377 1.01305 0.87710 0.88032 0.86753 0.87636 0.86759 0.71644 0.83592 0.83501 0.91836 0.93774 0.91653 0.92459 0.88561 0.94496 0.93028 0.93390 0.91134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 14.25 29.01 0.41 -0.67 16 2 C -0.18 -1.64 9.39 -36.03 -0.34 -1.98 16 3 C 0.14 1.40 5.90 -5.19 -0.03 1.36 16 4 N -0.45 -5.97 2.82 -116.22 -0.33 -6.30 16 5 C 0.20 2.60 7.95 -153.73 -1.22 1.38 16 6 C 0.19 1.90 7.38 -79.71 -0.59 1.31 16 7 N -0.22 -1.95 10.66 35.11 0.37 -1.58 16 8 N -0.56 -4.29 7.11 31.48 0.22 -4.07 16 9 C 0.50 4.68 8.90 -10.50 -0.09 4.59 16 10 O -0.50 -6.20 18.03 5.53 0.10 -6.10 16 11 C -0.15 -1.23 6.91 -28.22 -0.19 -1.42 16 12 N -0.23 -3.60 12.24 32.43 0.40 -3.20 16 13 N -0.31 -5.49 11.45 30.30 0.35 -5.15 16 14 C 0.40 6.47 6.85 -319.00 -2.18 4.28 16 15 N -0.46 -7.86 4.61 -174.58 -0.81 -8.67 16 16 C 0.07 1.01 5.39 -3.84 -0.02 0.99 16 17 C -0.12 -1.94 6.09 -26.65 -0.16 -2.11 16 18 C -0.11 -2.46 5.03 -26.61 -0.13 -2.59 16 19 C 0.06 1.28 2.26 -91.69 -0.21 1.07 16 20 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 21 C -0.51 -13.37 8.56 -34.44 -0.29 -13.67 16 22 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 23 C 0.06 1.69 5.31 -17.82 -0.09 1.60 16 24 N -0.89 -24.09 11.36 55.43 0.63 -23.46 16 25 Si 0.89 20.63 29.54 -169.99 -5.02 15.61 16 26 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 27 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 28 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 29 C 0.08 1.65 4.13 -3.83 -0.02 1.64 16 30 H 0.10 0.68 7.84 -52.48 -0.41 0.27 16 31 H 0.10 0.64 8.06 -52.49 -0.42 0.22 16 32 H 0.11 1.10 6.37 -52.48 -0.33 0.76 16 33 H 0.11 0.94 6.67 -51.93 -0.35 0.59 16 34 H 0.11 1.20 8.09 -51.93 -0.42 0.78 16 35 H 0.44 2.31 8.96 -183.30 -1.64 0.67 16 36 H 0.15 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.15 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.06 0.82 5.60 -51.93 -0.29 0.53 16 39 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.10 2.33 6.17 -51.93 -0.32 2.01 16 43 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 44 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 45 H 0.05 1.01 8.08 -51.93 -0.42 0.59 16 46 H 0.07 1.49 8.10 -51.93 -0.42 1.07 16 LS Contribution 380.44 15.07 5.73 5.73 Total: -1.00 -30.10 380.44 -11.05 -41.15 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -7.53 Total: 0.24 kcal Atomic # 6 Polarization: 0.95 SS G_CDS: -5.17 Total: -4.22 kcal Atomic # 7 Polarization: -53.26 SS G_CDS: 0.84 Total: -52.42 kcal Atomic # 8 Polarization: -6.20 SS G_CDS: 0.10 Total: -6.10 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -30.10 -11.05 -41.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121663201.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.425 kcal (2) G-P(sol) polarization free energy of solvation -30.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 143.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.151 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds