Wall clock time and date at job start Wed Apr 1 2020 02:44:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50696 * 120.00045 * 2 1 4 4 N 1.46507 * 109.46553 * 125.59449 * 3 2 1 5 5 C 1.37835 * 127.16431 * 275.63502 * 4 3 2 6 6 C 1.46711 * 126.51363 * 359.97438 * 5 4 3 7 7 N 1.29694 * 126.53940 * 359.69191 * 6 5 4 8 8 N 1.39163 * 112.71096 * 179.88573 * 7 6 5 9 9 C 1.34855 * 111.29952 * 0.39419 * 8 7 6 10 10 O 1.21314 * 127.31045 * 179.76633 * 9 8 7 11 11 C 1.51438 * 126.54331 * 179.97438 * 6 5 4 12 12 N 1.31617 * 106.98114 * 180.02562 * 5 4 3 13 13 N 1.28515 * 109.88209 * 359.74508 * 12 5 4 14 14 C 1.31502 * 110.14186 * 0.42178 * 13 12 5 15 15 N 1.38268 * 126.33773 * 179.85713 * 14 13 12 16 16 C 1.46843 * 111.00432 * 102.56269 * 15 14 13 17 17 C 1.53036 * 109.52474 * 174.16377 * 16 15 14 18 18 C 1.53117 * 109.28302 * 59.17498 * 17 16 15 19 19 C 1.53122 * 109.16051 * 302.35117 * 18 17 16 20 20 H 1.09001 * 109.49529 * 297.66879 * 19 18 17 21 21 C 1.50699 * 109.50180 * 177.59510 * 19 18 17 22 22 H 1.08007 * 119.99597 * 240.07757 * 21 19 18 23 23 C 1.37873 * 120.00419 * 60.34870 * 21 19 18 24 24 N 1.31515 * 119.99636 * 359.72634 * 23 21 19 25 25 Si 1.86797 * 120.00200 * 179.72406 * 23 21 19 26 26 H 1.48504 * 109.47219 * 0.02562 * 25 23 21 27 27 H 1.48502 * 109.47019 * 120.00111 * 25 23 21 28 28 H 1.48497 * 109.47312 * 240.00112 * 25 23 21 29 29 C 1.46854 * 110.99402 * 338.30575 * 15 14 13 30 30 H 1.08003 * 120.00103 * 359.97438 * 1 2 3 31 31 H 1.08000 * 120.00642 * 179.97438 * 1 2 3 32 32 H 1.08004 * 119.99211 * 180.02562 * 2 1 3 33 33 H 1.08998 * 109.47173 * 5.59925 * 3 2 1 34 34 H 1.09000 * 109.47010 * 245.58842 * 3 2 1 35 35 H 0.97003 * 124.35480 * 180.16054 * 8 7 6 36 36 H 1.09003 * 110.58751 * 298.51609 * 11 6 5 37 37 H 1.09000 * 110.58444 * 61.26726 * 11 6 5 38 38 H 1.08999 * 109.46396 * 54.14456 * 16 15 14 39 39 H 1.09001 * 109.45844 * 294.17764 * 16 15 14 40 40 H 1.09004 * 109.50083 * 299.23445 * 17 16 15 41 41 H 1.09005 * 109.50153 * 179.12113 * 17 16 15 42 42 H 1.08995 * 109.52368 * 182.43956 * 18 17 16 43 43 H 1.09005 * 109.57361 * 62.28153 * 18 17 16 44 44 H 0.97001 * 119.99878 * 179.97438 * 24 23 21 45 45 H 1.09002 * 109.42691 * 65.80910 * 29 15 14 46 46 H 1.09000 * 109.49634 * 305.84133 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 3.0039 1.3259 1.1232 5 6 2.7358 1.6836 2.4271 6 6 1.4426 2.1216 2.9639 7 7 0.3354 2.2514 2.3010 8 7 -0.7201 2.6846 3.0977 9 6 -0.3258 2.8728 4.3735 10 8 -1.0053 3.2490 5.3054 11 6 1.1473 2.5143 4.3963 12 7 3.8607 1.5587 3.0990 13 7 4.7941 1.1491 2.3163 14 6 4.3274 0.9957 1.0965 15 7 5.0440 0.5723 -0.0077 16 6 4.7546 -0.8341 -0.3153 17 6 5.4488 -1.2251 -1.6219 18 6 6.9584 -1.0156 -1.4748 19 6 7.2294 0.4459 -1.1069 20 1 6.8818 1.0940 -1.9114 21 6 8.7088 0.6472 -0.9023 22 1 9.0805 0.9875 0.0530 23 6 9.5875 0.4023 -1.9362 24 7 9.1349 -0.0122 -3.0994 25 14 11.4205 0.6592 -1.6849 26 1 11.6694 1.1250 -0.2969 27 1 12.1357 -0.6223 -1.9121 28 1 11.9139 1.6784 -2.6456 29 6 6.4836 0.7895 0.1845 30 1 -0.5400 0.9353 0.0004 31 1 -0.5401 -0.9352 -0.0004 32 1 1.8499 -0.9354 -0.0004 33 1 1.3595 2.1311 0.1003 34 1 2.6130 1.4073 -0.9358 35 1 -1.6227 2.8353 2.7760 36 1 1.3273 1.6754 5.0686 37 1 1.7487 3.3748 4.6896 38 1 3.6782 -0.9686 -0.4215 39 1 5.1213 -1.4656 0.4939 40 1 5.0725 -0.6032 -2.4341 41 1 5.2466 -2.2735 -1.8417 42 1 7.4525 -1.2517 -2.4172 43 1 7.3426 -1.6661 -0.6890 44 1 9.7530 -0.1841 -3.8270 45 1 6.8420 0.1508 0.9918 46 1 6.6630 1.8337 0.4407 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121663201.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:44:50 Heat of formation + Delta-G solvation = 114.919542 kcal Electronic energy + Delta-G solvation = -30297.453062 eV Core-core repulsion = 26225.079365 eV Total energy + Delta-G solvation = -4072.373698 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.11182 -42.20069 -39.98864 -38.72407 -37.24872 -35.77806 -34.03300 -33.89619 -33.00192 -31.81403 -30.41340 -30.14781 -27.92293 -27.03078 -25.45521 -24.88615 -23.25969 -22.83407 -22.19765 -21.46898 -20.73630 -20.30674 -19.01290 -18.80490 -18.11366 -17.70335 -17.26438 -17.05572 -16.77988 -16.45155 -15.97922 -15.79843 -15.63397 -15.43590 -15.26456 -14.71748 -14.55554 -14.45604 -14.27352 -14.07241 -13.52707 -13.42513 -13.36781 -12.87972 -12.82353 -12.73947 -12.62074 -12.53132 -12.37497 -11.91346 -11.83500 -11.79306 -11.41802 -11.32709 -11.24088 -11.15228 -11.04184 -10.69236 -10.50943 -10.38351 -10.11146 -9.31352 -8.07784 -6.19882 -0.44582 0.71630 0.84232 1.26963 1.34620 1.42403 1.45367 1.48628 1.56509 1.83155 2.33018 2.45631 2.71837 2.92806 3.20718 3.35212 3.63224 3.72772 3.81239 3.93554 4.08546 4.17163 4.21587 4.22173 4.34862 4.40603 4.45305 4.57519 4.62040 4.73311 4.78907 4.81060 4.90894 4.97070 5.02044 5.06573 5.28080 5.33050 5.48117 5.52132 5.62216 5.66499 5.68562 5.72290 6.01607 6.12412 6.14804 6.18675 6.40401 6.72226 6.89600 7.45014 7.47753 8.97252 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.020593 B = 0.002594 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.375355 B =10791.959655 C =11799.078991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.203 4.203 3 C 0.134 3.866 4 N -0.447 5.447 5 C 0.225 3.775 6 C 0.180 3.820 7 N -0.205 5.205 8 N -0.549 5.549 9 C 0.510 3.490 10 O -0.528 6.528 11 C -0.148 4.148 12 N -0.257 5.257 13 N -0.344 5.344 14 C 0.382 3.618 15 N -0.458 5.458 16 C 0.070 3.930 17 C -0.105 4.105 18 C -0.108 4.108 19 C 0.056 3.944 20 H 0.008 0.992 21 C -0.534 4.534 22 H 0.049 0.951 23 C 0.021 3.979 24 N -0.911 5.911 25 Si 0.949 3.051 26 H -0.271 1.271 27 H -0.279 1.279 28 H -0.281 1.281 29 C 0.103 3.897 30 H 0.116 0.884 31 H 0.116 0.884 32 H 0.108 0.892 33 H 0.121 0.879 34 H 0.110 0.890 35 H 0.450 0.550 36 H 0.161 0.839 37 H 0.161 0.839 38 H 0.097 0.903 39 H 0.038 0.962 40 H 0.065 0.935 41 H 0.085 0.915 42 H 0.067 0.933 43 H 0.027 0.973 44 H 0.261 0.739 45 H 0.034 0.966 46 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.242 0.409 6.232 23.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.222 4.222 3 C 0.014 3.986 4 N -0.140 5.140 5 C -0.041 4.041 6 C -0.011 4.011 7 N -0.019 5.019 8 N -0.298 5.298 9 C 0.297 3.703 10 O -0.403 6.403 11 C -0.189 4.189 12 N -0.103 5.103 13 N -0.191 5.191 14 C 0.025 3.975 15 N -0.182 5.182 16 C -0.056 4.056 17 C -0.143 4.143 18 C -0.146 4.146 19 C 0.037 3.963 20 H 0.026 0.974 21 C -0.572 4.572 22 H 0.067 0.933 23 C -0.179 4.179 24 N -0.550 5.550 25 Si 0.775 3.225 26 H -0.196 1.196 27 H -0.205 1.205 28 H -0.207 1.207 29 C -0.024 4.024 30 H 0.134 0.866 31 H 0.134 0.866 32 H 0.126 0.874 33 H 0.138 0.862 34 H 0.128 0.872 35 H 0.299 0.701 36 H 0.179 0.821 37 H 0.178 0.822 38 H 0.115 0.885 39 H 0.056 0.944 40 H 0.084 0.916 41 H 0.103 0.897 42 H 0.085 0.915 43 H 0.045 0.955 44 H 0.071 0.929 45 H 0.053 0.947 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -22.274 0.808 6.424 23.196 hybrid contribution 0.713 -0.078 -0.113 0.726 sum -21.560 0.730 6.312 22.477 Atomic orbital electron populations 1.24143 0.94781 1.03636 0.93907 1.22921 0.96878 0.96681 1.05691 1.21349 0.91035 0.99162 0.87051 1.46505 1.08771 1.48628 1.10085 1.20920 0.93830 1.07674 0.81632 1.20939 0.88179 0.97670 0.94334 1.75478 0.95336 1.11169 1.19885 1.47492 1.11600 1.63580 1.07158 1.21318 0.90190 0.76012 0.82817 1.90851 1.62678 1.47081 1.39665 1.21953 0.94530 1.08107 0.94326 1.74402 0.95461 1.15155 1.25255 1.74823 1.23746 1.21820 0.98717 1.22697 0.83170 1.00237 0.91388 1.58678 1.09387 1.21890 1.28288 1.22338 1.01404 0.83581 0.98277 1.21600 0.95564 1.01440 0.95715 1.21522 0.94192 0.97479 1.01448 1.18622 0.92787 0.93779 0.91074 0.97413 1.21437 0.92781 1.45099 0.97930 0.93320 1.25585 1.02518 0.94832 0.94933 1.69996 1.35571 1.46434 1.02993 0.85638 0.80909 0.77762 0.78144 1.19576 1.20525 1.20670 1.21961 0.81400 0.99950 0.99044 0.86626 0.86609 0.87363 0.86152 0.87215 0.70138 0.82131 0.82198 0.88519 0.94399 0.91643 0.89691 0.91491 0.95464 0.92950 0.94727 0.92697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.36 14.25 67.78 0.97 -0.40 16 2 C -0.20 -3.05 9.39 25.64 0.24 -2.81 16 3 C 0.13 2.43 5.90 85.63 0.51 2.94 16 4 N -0.45 -11.13 2.82 -521.62 -1.47 -12.60 16 5 C 0.23 5.48 7.95 135.69 1.08 6.56 16 6 C 0.18 3.09 7.38 45.32 0.33 3.43 16 7 N -0.21 -2.91 10.66 -42.82 -0.46 -3.36 16 8 N -0.55 -6.59 7.11 -172.65 -1.23 -7.82 16 9 C 0.51 8.16 8.90 87.94 0.78 8.94 16 10 O -0.53 -12.22 18.03 -3.14 -0.06 -12.28 16 11 C -0.15 -2.00 6.91 29.63 0.20 -1.80 16 12 N -0.26 -7.93 12.24 -51.31 -0.63 -8.56 16 13 N -0.34 -12.39 11.45 -58.06 -0.66 -13.06 16 14 C 0.38 12.36 6.85 260.15 1.78 14.14 16 15 N -0.46 -15.78 4.61 -706.24 -3.26 -19.04 16 16 C 0.07 2.09 5.39 86.33 0.47 2.56 16 17 C -0.11 -3.46 6.09 30.65 0.19 -3.27 16 18 C -0.11 -4.76 5.03 30.67 0.15 -4.61 16 19 C 0.06 2.72 2.26 -11.49 -0.03 2.70 16 20 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 21 C -0.53 -28.91 8.56 25.60 0.22 -28.69 16 22 H 0.05 2.66 7.74 -2.91 -0.02 2.63 16 23 C 0.02 1.11 5.31 84.65 0.45 1.56 16 24 N -0.91 -50.58 11.36 21.45 0.24 -50.34 16 25 Si 0.95 43.07 29.54 68.60 2.03 45.10 16 26 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 27 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 28 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 29 C 0.10 4.35 4.13 86.32 0.36 4.71 16 30 H 0.12 1.00 7.84 -2.91 -0.02 0.98 16 31 H 0.12 0.97 8.06 -2.91 -0.02 0.95 16 32 H 0.11 1.79 6.37 -2.91 -0.02 1.77 16 33 H 0.12 1.79 6.67 -2.39 -0.02 1.77 16 34 H 0.11 2.11 8.09 -2.39 -0.02 2.09 16 35 H 0.45 3.23 8.96 -213.91 -1.92 1.31 16 36 H 0.16 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.16 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.10 2.28 5.60 -2.39 -0.01 2.27 16 39 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.06 2.16 8.14 -2.38 -0.02 2.14 16 41 H 0.08 2.34 8.14 -2.38 -0.02 2.32 16 42 H 0.07 3.35 6.17 -2.39 -0.01 3.33 16 43 H 0.03 1.21 8.14 -2.38 -0.02 1.19 16 44 H 0.26 13.80 8.31 -92.71 -0.77 13.03 16 45 H 0.03 1.53 8.08 -2.39 -0.02 1.51 16 46 H 0.05 2.44 8.10 -2.39 -0.02 2.42 16 Total: -1.00 -67.40 380.44 1.31 -66.08 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: -0.89 Total: 9.92 kcal Atomic # 6 Polarization: -1.74 SS G_CDS: 7.70 Total: 5.96 kcal Atomic # 7 Polarization: -107.32 SS G_CDS: -7.46 Total: -114.78 kcal Atomic # 8 Polarization: -12.22 SS G_CDS: -0.06 Total: -12.28 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Total: -67.40 1.31 -66.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121663201.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.002 kcal (2) G-P(sol) polarization free energy of solvation -67.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds