Wall clock time and date at job start Wed Apr 1 2020 02:44:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50695 * 120.00309 * 2 1 4 4 N 1.46497 * 109.47434 * 234.50636 * 3 2 1 5 5 C 1.37838 * 127.16633 * 84.56843 * 4 3 2 6 6 C 1.46700 * 126.51104 * 359.97438 * 5 4 3 7 7 N 1.29701 * 126.54472 * 359.69194 * 6 5 4 8 8 N 1.39162 * 112.71757 * 179.86321 * 7 6 5 9 9 C 1.34859 * 111.29365 * 0.41772 * 8 7 6 10 10 O 1.21315 * 127.30443 * 179.79056 * 9 8 7 11 11 C 1.51445 * 126.54584 * 179.97438 * 6 5 4 12 12 N 1.31618 * 106.97962 * 180.02562 * 5 4 3 13 13 N 1.28503 * 109.88705 * 359.97438 * 12 5 4 14 14 C 1.31515 * 110.14310 * 359.72555 * 13 12 5 15 15 N 1.38271 * 126.34051 * 180.27912 * 14 13 12 16 16 C 1.46846 * 110.99974 * 272.10329 * 15 14 13 17 17 C 1.53037 * 109.52143 * 185.83590 * 16 15 14 18 18 C 1.53120 * 109.28122 * 300.82426 * 17 16 15 19 19 C 1.53117 * 109.16124 * 57.65362 * 18 17 16 20 20 H 1.09000 * 109.50156 * 62.28517 * 19 18 17 21 21 C 1.50698 * 109.50474 * 182.40571 * 19 18 17 22 22 H 1.08001 * 120.00338 * 119.79942 * 21 19 18 23 23 C 1.37876 * 119.99617 * 299.80182 * 21 19 18 24 24 N 1.31514 * 120.00286 * 0.02562 * 23 21 19 25 25 Si 1.86806 * 119.99808 * 179.97438 * 23 21 19 26 26 H 1.48495 * 109.46975 * 60.00053 * 25 23 21 27 27 H 1.48501 * 109.47087 * 180.02562 * 25 23 21 28 28 H 1.48495 * 109.47064 * 300.00053 * 25 23 21 29 29 C 1.46847 * 110.99540 * 36.31463 * 15 14 13 30 30 H 1.08002 * 119.99905 * 179.97438 * 1 2 3 31 31 H 1.07994 * 119.99606 * 0.02562 * 1 2 3 32 32 H 1.08004 * 119.99886 * 180.02562 * 2 1 3 33 33 H 1.08999 * 109.47180 * 354.50865 * 3 2 1 34 34 H 1.09002 * 109.47390 * 114.50146 * 3 2 1 35 35 H 0.96996 * 124.35687 * 180.17641 * 8 7 6 36 36 H 1.09000 * 110.58377 * 298.53521 * 11 6 5 37 37 H 1.09002 * 110.57895 * 61.28157 * 11 6 5 38 38 H 1.08996 * 109.46295 * 305.85563 * 16 15 14 39 39 H 1.09007 * 109.46235 * 65.82389 * 16 15 14 40 40 H 1.09000 * 109.49933 * 180.87849 * 17 16 15 41 41 H 1.09001 * 109.53086 * 60.78841 * 17 16 15 42 42 H 1.08997 * 109.51794 * 297.74701 * 18 17 16 43 43 H 1.08995 * 109.51926 * 177.56013 * 18 17 16 44 44 H 0.97007 * 120.00022 * 180.02562 * 24 23 21 45 45 H 1.09000 * 109.46356 * 294.17499 * 29 15 14 46 46 H 1.08995 * 109.46226 * 54.15719 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 3.0023 1.3270 -1.1245 5 6 2.7333 1.6897 -2.4268 6 6 1.4403 2.1319 -2.9604 7 7 0.3314 2.2508 -2.2982 8 7 -0.7222 2.6974 -3.0900 9 6 -0.3289 2.8899 -4.3655 10 8 -1.0091 3.2702 -5.2952 11 6 1.1439 2.5311 -4.3909 12 7 3.8565 1.5628 -3.1010 13 7 4.7912 1.1532 -2.3200 14 6 4.3263 0.9986 -1.0995 15 7 5.0452 0.5772 0.0038 16 6 5.0388 -0.8875 0.1082 17 6 5.7165 -1.3102 1.4136 18 6 7.1547 -0.7850 1.4297 19 6 7.1354 0.7378 1.2711 20 1 6.6093 1.1850 2.1145 21 6 8.5495 1.2570 1.2266 22 1 8.9010 1.7927 0.3572 23 6 9.3944 1.0481 2.2959 24 7 8.9665 0.3953 3.3544 25 14 11.1474 1.6910 2.2406 26 1 11.1284 3.1673 2.0815 27 1 11.8443 1.3376 3.5035 28 1 11.8633 1.0786 1.0927 29 6 6.4166 1.1012 -0.0303 30 1 -0.5400 -0.9353 -0.0004 31 1 -0.5399 0.9353 -0.0004 32 1 1.8500 -0.9354 -0.0004 33 1 1.3594 2.1312 -0.0983 34 1 2.6144 1.4066 0.9351 35 1 -1.6244 2.8474 -2.7669 36 1 1.7438 3.3940 -4.6801 37 1 1.3254 1.6958 -5.0672 38 1 4.0101 -1.2477 0.0998 39 1 5.5797 -1.3142 -0.7366 40 1 5.7254 -2.3979 1.4833 41 1 5.1682 -0.8958 2.2596 42 1 7.7142 -1.2299 0.6069 43 1 7.6273 -1.0466 2.3764 44 1 9.5609 0.2486 4.1069 45 1 6.9511 0.6652 -0.8743 46 1 6.3886 2.1853 -0.1390 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001121663202.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:44:53 Heat of formation + Delta-G solvation = 131.432677 kcal Electronic energy + Delta-G solvation = -30263.946556 eV Core-core repulsion = 26192.288922 eV Total energy + Delta-G solvation = -4071.657634 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.99285 -41.43996 -38.48875 -37.88329 -36.32527 -34.10019 -33.12611 -32.66098 -31.75771 -30.08508 -29.68514 -29.01354 -27.03623 -25.12214 -24.03175 -23.84699 -22.00516 -21.66222 -21.15251 -20.52078 -19.92530 -18.71372 -18.18198 -17.54557 -16.80933 -16.66658 -16.15298 -15.84676 -15.70653 -15.11607 -14.98725 -14.75801 -14.51688 -14.17601 -14.01799 -13.65827 -13.35908 -12.98211 -12.75119 -12.67111 -12.57334 -12.56617 -12.00637 -11.86843 -11.71542 -11.62139 -10.98082 -10.88449 -10.78835 -10.71910 -10.43767 -10.35322 -10.27056 -10.10801 -9.93444 -9.83410 -9.64146 -9.32176 -9.02153 -8.77038 -8.39777 -8.16548 -6.04784 -4.10767 0.42448 1.59879 1.75910 2.06366 2.17399 2.30160 2.87123 3.18393 3.30857 3.35230 3.38620 3.63480 3.92161 4.14228 4.41865 4.52069 4.53337 4.79724 4.82697 4.92975 5.05968 5.17340 5.26235 5.31459 5.39785 5.49883 5.54303 5.61069 5.76056 5.80201 5.97782 6.08441 6.22132 6.26557 6.29919 6.33416 6.44937 6.50058 6.61732 6.75658 6.89716 6.93595 7.18898 7.28577 7.39577 7.53684 7.68451 7.92986 8.04678 8.35998 8.57057 8.92211 9.54228 11.01473 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.019561 B = 0.002599 C = 0.002406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.087535 B =10772.003067 C =11636.924921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.178 4.178 3 C 0.138 3.862 4 N -0.448 5.448 5 C 0.204 3.796 6 C 0.191 3.809 7 N -0.221 5.221 8 N -0.563 5.563 9 C 0.505 3.495 10 O -0.496 6.496 11 C -0.153 4.153 12 N -0.233 5.233 13 N -0.305 5.305 14 C 0.394 3.606 15 N -0.466 5.466 16 C 0.072 3.928 17 C -0.116 4.116 18 C -0.115 4.115 19 C 0.057 3.943 20 H 0.036 0.964 21 C -0.515 4.515 22 H 0.056 0.944 23 C 0.065 3.935 24 N -0.889 5.889 25 Si 0.892 3.108 26 H -0.277 1.277 27 H -0.288 1.288 28 H -0.277 1.277 29 C 0.080 3.920 30 H 0.101 0.899 31 H 0.104 0.896 32 H 0.113 0.887 33 H 0.104 0.896 34 H 0.116 0.884 35 H 0.438 0.562 36 H 0.147 0.853 37 H 0.147 0.853 38 H 0.059 0.941 39 H 0.045 0.955 40 H 0.056 0.944 41 H 0.064 0.936 42 H 0.036 0.964 43 H 0.096 0.904 44 H 0.261 0.739 45 H 0.048 0.952 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.987 -0.605 -6.981 20.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.197 4.197 3 C 0.016 3.984 4 N -0.141 5.141 5 C -0.060 4.060 6 C 0.000 4.000 7 N -0.035 5.035 8 N -0.312 5.312 9 C 0.290 3.710 10 O -0.368 6.368 11 C -0.195 4.195 12 N -0.081 5.081 13 N -0.152 5.152 14 C 0.039 3.961 15 N -0.192 5.192 16 C -0.055 4.055 17 C -0.154 4.154 18 C -0.153 4.153 19 C 0.038 3.962 20 H 0.054 0.946 21 C -0.554 4.554 22 H 0.075 0.925 23 C -0.137 4.137 24 N -0.527 5.527 25 Si 0.720 3.280 26 H -0.203 1.203 27 H -0.213 1.213 28 H -0.202 1.202 29 C -0.045 4.045 30 H 0.119 0.881 31 H 0.123 0.877 32 H 0.131 0.869 33 H 0.123 0.877 34 H 0.134 0.866 35 H 0.284 0.716 36 H 0.165 0.835 37 H 0.164 0.836 38 H 0.078 0.922 39 H 0.063 0.937 40 H 0.075 0.925 41 H 0.083 0.917 42 H 0.055 0.945 43 H 0.114 0.886 44 H 0.071 0.929 45 H 0.066 0.934 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -19.087 -0.317 -7.179 20.395 hybrid contribution 0.204 0.154 0.052 0.260 sum -18.884 -0.163 -7.127 20.185 Atomic orbital electron populations 1.23926 0.95465 1.02376 0.97212 1.23007 0.96271 0.97739 1.02710 1.21113 0.91328 0.97631 0.88334 1.46446 1.09749 1.48589 1.09281 1.20599 0.93545 1.09682 0.82162 1.21156 0.88945 0.96550 0.93393 1.75518 0.95463 1.12437 1.20049 1.47491 1.11495 1.64308 1.07908 1.21260 0.89988 0.76802 0.82918 1.90855 1.61805 1.45378 1.38739 1.21896 0.95256 1.07076 0.95239 1.74493 0.94884 1.13626 1.25047 1.74909 1.22198 1.19741 0.98376 1.22861 0.82365 0.98963 0.91953 1.58887 1.18021 1.11899 1.30367 1.22198 0.99906 0.83443 0.99910 1.21719 0.99427 0.99134 0.95119 1.21722 0.91849 0.98235 1.03447 1.18717 0.94328 0.92519 0.90633 0.94606 1.21035 0.96153 1.35855 1.02352 0.92538 1.24904 0.98440 0.95014 0.95296 1.69864 1.35989 1.40874 1.06022 0.86651 0.84644 0.79436 0.77254 1.20254 1.21335 1.20221 1.22484 0.81507 0.98790 1.01711 0.88070 0.87743 0.86861 0.87747 0.86552 0.71614 0.83509 0.83558 0.92234 0.93668 0.92513 0.91727 0.94490 0.88611 0.92903 0.93369 0.91615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 14.24 29.01 0.41 -0.72 16 2 C -0.18 -1.64 9.85 -36.03 -0.35 -1.99 16 3 C 0.14 1.43 6.12 -5.20 -0.03 1.39 16 4 N -0.45 -5.92 2.82 -116.23 -0.33 -6.25 16 5 C 0.20 2.64 7.95 -153.73 -1.22 1.41 16 6 C 0.19 1.88 7.38 -79.71 -0.59 1.30 16 7 N -0.22 -1.94 10.65 35.11 0.37 -1.57 16 8 N -0.56 -4.29 7.11 31.48 0.22 -4.07 16 9 C 0.50 4.67 8.89 -10.50 -0.09 4.58 16 10 O -0.50 -6.18 18.03 5.53 0.10 -6.08 16 11 C -0.15 -1.22 6.91 -28.22 -0.19 -1.42 16 12 N -0.23 -3.62 12.24 32.43 0.40 -3.23 16 13 N -0.30 -5.39 11.67 30.30 0.35 -5.04 16 14 C 0.39 6.39 6.69 -318.97 -2.13 4.26 16 15 N -0.47 -7.96 4.61 -174.57 -0.81 -8.77 16 16 C 0.07 1.13 5.39 -3.83 -0.02 1.11 16 17 C -0.12 -1.97 6.09 -26.65 -0.16 -2.13 16 18 C -0.11 -2.46 5.03 -26.61 -0.13 -2.60 16 19 C 0.06 1.32 2.26 -91.69 -0.21 1.11 16 20 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 21 C -0.52 -13.43 8.56 -34.44 -0.29 -13.73 16 22 H 0.06 1.47 7.74 -52.49 -0.41 1.07 16 23 C 0.07 1.72 5.31 -17.82 -0.09 1.62 16 24 N -0.89 -24.09 11.36 55.43 0.63 -23.46 16 25 Si 0.89 20.63 29.54 -169.99 -5.02 15.61 16 26 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 27 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 28 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 29 C 0.08 1.63 4.31 -3.83 -0.02 1.61 16 30 H 0.10 0.65 8.06 -52.49 -0.42 0.23 16 31 H 0.10 0.70 7.84 -52.49 -0.41 0.29 16 32 H 0.11 1.11 7.25 -52.48 -0.38 0.73 16 33 H 0.10 0.95 6.67 -51.93 -0.35 0.60 16 34 H 0.12 1.26 8.09 -51.93 -0.42 0.84 16 35 H 0.44 2.32 8.96 -183.31 -1.64 0.68 16 36 H 0.15 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.15 0.99 8.14 -51.93 -0.42 0.56 16 38 H 0.06 0.80 7.29 -51.93 -0.38 0.42 16 39 H 0.04 0.75 8.14 -51.92 -0.42 0.32 16 40 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 43 H 0.10 2.33 6.16 -51.93 -0.32 2.01 16 44 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 45 H 0.05 1.02 8.05 -51.93 -0.42 0.60 16 46 H 0.07 1.37 8.10 -51.93 -0.42 0.95 16 LS Contribution 383.85 15.07 5.78 5.78 Total: -1.00 -29.97 383.85 -11.09 -41.06 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -7.66 Total: 0.18 kcal Atomic # 6 Polarization: 0.95 SS G_CDS: -5.14 Total: -4.18 kcal Atomic # 7 Polarization: -53.22 SS G_CDS: 0.85 Total: -52.37 kcal Atomic # 8 Polarization: -6.18 SS G_CDS: 0.10 Total: -6.08 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -29.97 -11.09 -41.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121663202.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.492 kcal (2) G-P(sol) polarization free energy of solvation -29.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 142.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.059 kcal (6) G-S(sol) free energy of system = (1) + (5) 131.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds