Wall clock time and date at job start Wed Apr 1 2020 02:44:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50695 * 120.00309 * 2 1 4 4 N 1.46497 * 109.47434 * 234.50636 * 3 2 1 5 5 C 1.37838 * 127.16633 * 84.56843 * 4 3 2 6 6 C 1.46700 * 126.51104 * 359.97438 * 5 4 3 7 7 N 1.29701 * 126.54472 * 359.69194 * 6 5 4 8 8 N 1.39162 * 112.71757 * 179.86321 * 7 6 5 9 9 C 1.34859 * 111.29365 * 0.41772 * 8 7 6 10 10 O 1.21315 * 127.30443 * 179.79056 * 9 8 7 11 11 C 1.51445 * 126.54584 * 179.97438 * 6 5 4 12 12 N 1.31618 * 106.97962 * 180.02562 * 5 4 3 13 13 N 1.28503 * 109.88705 * 359.97438 * 12 5 4 14 14 C 1.31515 * 110.14310 * 359.72555 * 13 12 5 15 15 N 1.38271 * 126.34051 * 180.27912 * 14 13 12 16 16 C 1.46846 * 110.99974 * 272.10329 * 15 14 13 17 17 C 1.53037 * 109.52143 * 185.83590 * 16 15 14 18 18 C 1.53120 * 109.28122 * 300.82426 * 17 16 15 19 19 C 1.53117 * 109.16124 * 57.65362 * 18 17 16 20 20 H 1.09000 * 109.50156 * 62.28517 * 19 18 17 21 21 C 1.50698 * 109.50474 * 182.40571 * 19 18 17 22 22 H 1.08001 * 120.00338 * 119.79942 * 21 19 18 23 23 C 1.37876 * 119.99617 * 299.80182 * 21 19 18 24 24 N 1.31514 * 120.00286 * 0.02562 * 23 21 19 25 25 Si 1.86806 * 119.99808 * 179.97438 * 23 21 19 26 26 H 1.48495 * 109.46975 * 60.00053 * 25 23 21 27 27 H 1.48501 * 109.47087 * 180.02562 * 25 23 21 28 28 H 1.48495 * 109.47064 * 300.00053 * 25 23 21 29 29 C 1.46847 * 110.99540 * 36.31463 * 15 14 13 30 30 H 1.08002 * 119.99905 * 179.97438 * 1 2 3 31 31 H 1.07994 * 119.99606 * 0.02562 * 1 2 3 32 32 H 1.08004 * 119.99886 * 180.02562 * 2 1 3 33 33 H 1.08999 * 109.47180 * 354.50865 * 3 2 1 34 34 H 1.09002 * 109.47390 * 114.50146 * 3 2 1 35 35 H 0.96996 * 124.35687 * 180.17641 * 8 7 6 36 36 H 1.09000 * 110.58377 * 298.53521 * 11 6 5 37 37 H 1.09002 * 110.57895 * 61.28157 * 11 6 5 38 38 H 1.08996 * 109.46295 * 305.85563 * 16 15 14 39 39 H 1.09007 * 109.46235 * 65.82389 * 16 15 14 40 40 H 1.09000 * 109.49933 * 180.87849 * 17 16 15 41 41 H 1.09001 * 109.53086 * 60.78841 * 17 16 15 42 42 H 1.08997 * 109.51794 * 297.74701 * 18 17 16 43 43 H 1.08995 * 109.51926 * 177.56013 * 18 17 16 44 44 H 0.97007 * 120.00022 * 180.02562 * 24 23 21 45 45 H 1.09000 * 109.46356 * 294.17499 * 29 15 14 46 46 H 1.08995 * 109.46226 * 54.15719 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 3.0023 1.3270 -1.1245 5 6 2.7333 1.6897 -2.4268 6 6 1.4403 2.1319 -2.9604 7 7 0.3314 2.2508 -2.2982 8 7 -0.7222 2.6974 -3.0900 9 6 -0.3289 2.8899 -4.3655 10 8 -1.0091 3.2702 -5.2952 11 6 1.1439 2.5311 -4.3909 12 7 3.8565 1.5628 -3.1010 13 7 4.7912 1.1532 -2.3200 14 6 4.3263 0.9986 -1.0995 15 7 5.0452 0.5772 0.0038 16 6 5.0388 -0.8875 0.1082 17 6 5.7165 -1.3102 1.4136 18 6 7.1547 -0.7850 1.4297 19 6 7.1354 0.7378 1.2711 20 1 6.6093 1.1850 2.1145 21 6 8.5495 1.2570 1.2266 22 1 8.9010 1.7927 0.3572 23 6 9.3944 1.0481 2.2959 24 7 8.9665 0.3953 3.3544 25 14 11.1474 1.6910 2.2406 26 1 11.1284 3.1673 2.0815 27 1 11.8443 1.3376 3.5035 28 1 11.8633 1.0786 1.0927 29 6 6.4166 1.1012 -0.0303 30 1 -0.5400 -0.9353 -0.0004 31 1 -0.5399 0.9353 -0.0004 32 1 1.8500 -0.9354 -0.0004 33 1 1.3594 2.1312 -0.0983 34 1 2.6144 1.4066 0.9351 35 1 -1.6244 2.8474 -2.7669 36 1 1.7438 3.3940 -4.6801 37 1 1.3254 1.6958 -5.0672 38 1 4.0101 -1.2477 0.0998 39 1 5.5797 -1.3142 -0.7366 40 1 5.7254 -2.3979 1.4833 41 1 5.1682 -0.8958 2.2596 42 1 7.7142 -1.2299 0.6069 43 1 7.6273 -1.0466 2.3764 44 1 9.5609 0.2486 4.1069 45 1 6.9511 0.6652 -0.8743 46 1 6.3886 2.1853 -0.1390 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121663202.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:44:52 Heat of formation + Delta-G solvation = 114.313007 kcal Electronic energy + Delta-G solvation = -30264.688921 eV Core-core repulsion = 26192.288922 eV Total energy + Delta-G solvation = -4072.399999 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -44.11738 -42.20713 -39.95830 -38.72810 -37.22252 -35.77338 -34.03623 -33.88837 -32.99243 -31.80390 -30.42051 -30.15590 -27.91138 -27.00102 -25.45433 -24.87098 -23.28532 -22.81703 -22.19275 -21.48462 -20.76568 -20.28110 -19.00519 -18.79527 -18.09245 -17.69074 -17.28010 -17.05696 -16.79055 -16.45902 -15.92575 -15.79498 -15.59435 -15.48982 -15.24658 -14.67048 -14.55437 -14.44374 -14.29622 -14.06669 -13.49879 -13.43334 -13.37045 -12.87065 -12.82073 -12.71347 -12.63569 -12.56592 -12.38929 -11.94664 -11.84903 -11.78532 -11.40815 -11.32612 -11.22490 -11.08117 -11.04379 -10.69757 -10.50060 -10.37704 -10.02159 -9.44684 -8.07228 -6.19665 -0.46251 0.72080 0.81314 1.25780 1.33880 1.45155 1.45557 1.48922 1.53414 1.81294 2.32510 2.45592 2.72988 2.92070 3.21057 3.34396 3.65946 3.75461 3.82442 3.95337 4.12307 4.17654 4.21972 4.22846 4.34201 4.40698 4.49627 4.59145 4.61388 4.72999 4.79233 4.82521 4.90611 4.97313 5.03072 5.07686 5.29462 5.33383 5.47725 5.52212 5.62935 5.66321 5.69547 5.73539 6.02335 6.12239 6.15394 6.20107 6.40722 6.71695 6.89502 7.41713 7.47806 8.97322 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.019561 B = 0.002599 C = 0.002406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.087535 B =10772.003067 C =11636.924921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.198 4.198 3 C 0.136 3.864 4 N -0.441 5.441 5 C 0.228 3.772 6 C 0.178 3.822 7 N -0.204 5.204 8 N -0.549 5.549 9 C 0.510 3.490 10 O -0.528 6.528 11 C -0.147 4.147 12 N -0.259 5.259 13 N -0.338 5.338 14 C 0.378 3.622 15 N -0.462 5.462 16 C 0.076 3.924 17 C -0.105 4.105 18 C -0.108 4.108 19 C 0.058 3.942 20 H 0.008 0.992 21 C -0.537 4.537 22 H 0.048 0.952 23 C 0.022 3.978 24 N -0.910 5.910 25 Si 0.949 3.051 26 H -0.274 1.274 27 H -0.283 1.283 28 H -0.274 1.274 29 C 0.101 3.899 30 H 0.115 0.885 31 H 0.115 0.885 32 H 0.107 0.893 33 H 0.119 0.881 34 H 0.109 0.891 35 H 0.450 0.550 36 H 0.161 0.839 37 H 0.162 0.838 38 H 0.091 0.909 39 H 0.037 0.963 40 H 0.083 0.917 41 H 0.065 0.935 42 H 0.026 0.974 43 H 0.066 0.934 44 H 0.262 0.738 45 H 0.034 0.966 46 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.323 -0.794 -7.420 22.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.217 4.217 3 C 0.015 3.985 4 N -0.133 5.133 5 C -0.038 4.038 6 C -0.013 4.013 7 N -0.018 5.018 8 N -0.298 5.298 9 C 0.297 3.703 10 O -0.402 6.402 11 C -0.189 4.189 12 N -0.104 5.104 13 N -0.185 5.185 14 C 0.021 3.979 15 N -0.187 5.187 16 C -0.050 4.050 17 C -0.143 4.143 18 C -0.146 4.146 19 C 0.039 3.961 20 H 0.027 0.973 21 C -0.575 4.575 22 H 0.067 0.933 23 C -0.178 4.178 24 N -0.549 5.549 25 Si 0.775 3.225 26 H -0.199 1.199 27 H -0.208 1.208 28 H -0.199 1.199 29 C -0.026 4.026 30 H 0.134 0.866 31 H 0.133 0.867 32 H 0.125 0.875 33 H 0.137 0.863 34 H 0.127 0.873 35 H 0.299 0.701 36 H 0.178 0.822 37 H 0.180 0.820 38 H 0.109 0.891 39 H 0.056 0.944 40 H 0.101 0.899 41 H 0.083 0.917 42 H 0.044 0.956 43 H 0.085 0.915 44 H 0.071 0.929 45 H 0.052 0.948 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -21.451 -0.511 -7.600 22.763 hybrid contribution 0.744 0.252 0.196 0.810 sum -20.706 -0.258 -7.404 21.992 Atomic orbital electron populations 1.24132 0.94785 1.03589 0.94211 1.22867 0.96787 0.96674 1.05398 1.21323 0.91000 0.99108 0.87050 1.46598 1.08993 1.47646 1.10074 1.20953 0.93932 1.07202 0.81709 1.20948 0.88129 0.97777 0.94423 1.75486 0.95356 1.10962 1.19992 1.47498 1.11762 1.63184 1.07388 1.21323 0.90197 0.76043 0.82769 1.90852 1.62617 1.46987 1.39777 1.21954 0.94497 1.08114 0.94302 1.74417 0.95473 1.15295 1.25251 1.74808 1.23685 1.20709 0.99262 1.22608 0.83507 1.00455 0.91361 1.58751 1.16066 1.12678 1.31213 1.22208 1.01459 0.82677 0.98657 1.21591 0.96139 1.00596 0.95928 1.21518 0.94768 0.97061 1.01259 1.18594 0.93046 0.93467 0.90962 0.97339 1.21389 0.97896 1.36033 1.02221 0.93324 1.25581 1.01842 0.95287 0.95076 1.69983 1.37026 1.41541 1.06381 0.85759 0.80566 0.78886 0.77326 1.19948 1.20813 1.19898 1.21995 0.83258 0.97924 0.99374 0.86636 0.86668 0.87508 0.86272 0.87290 0.70132 0.82187 0.82041 0.89089 0.94426 0.89882 0.91675 0.95550 0.91521 0.92927 0.94775 0.92915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.47 14.24 67.78 0.96 -0.50 16 2 C -0.20 -3.13 9.85 25.64 0.25 -2.87 16 3 C 0.14 2.55 6.12 85.63 0.52 3.07 16 4 N -0.44 -11.10 2.82 -521.63 -1.47 -12.57 16 5 C 0.23 5.53 7.95 135.69 1.08 6.61 16 6 C 0.18 3.07 7.38 45.32 0.33 3.41 16 7 N -0.20 -2.93 10.65 -42.82 -0.46 -3.39 16 8 N -0.55 -6.65 7.11 -172.65 -1.23 -7.88 16 9 C 0.51 8.16 8.89 87.94 0.78 8.94 16 10 O -0.53 -12.19 18.03 -3.14 -0.06 -12.25 16 11 C -0.15 -1.98 6.91 29.63 0.20 -1.77 16 12 N -0.26 -7.88 12.24 -51.32 -0.63 -8.51 16 13 N -0.34 -12.01 11.67 -58.05 -0.68 -12.69 16 14 C 0.38 12.16 6.69 260.15 1.74 13.90 16 15 N -0.46 -15.87 4.61 -706.22 -3.26 -19.13 16 16 C 0.08 2.33 5.39 86.33 0.47 2.80 16 17 C -0.10 -3.49 6.09 30.65 0.19 -3.30 16 18 C -0.11 -4.77 5.03 30.67 0.15 -4.62 16 19 C 0.06 2.81 2.26 -11.49 -0.03 2.78 16 20 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 21 C -0.54 -28.99 8.56 25.60 0.22 -28.77 16 22 H 0.05 2.63 7.74 -2.91 -0.02 2.61 16 23 C 0.02 1.17 5.31 84.65 0.45 1.61 16 24 N -0.91 -50.55 11.36 21.45 0.24 -50.30 16 25 Si 0.95 42.93 29.54 68.60 2.03 44.96 16 26 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 27 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 28 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 29 C 0.10 4.25 4.31 86.33 0.37 4.62 16 30 H 0.12 1.03 8.06 -2.91 -0.02 1.01 16 31 H 0.12 1.07 7.84 -2.91 -0.02 1.04 16 32 H 0.11 1.85 7.25 -2.91 -0.02 1.82 16 33 H 0.12 1.85 6.67 -2.39 -0.02 1.83 16 34 H 0.11 2.23 8.09 -2.39 -0.02 2.21 16 35 H 0.45 3.29 8.96 -213.92 -1.92 1.38 16 36 H 0.16 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.16 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.09 2.26 7.29 -2.39 -0.02 2.24 16 39 H 0.04 1.22 8.14 -2.38 -0.02 1.20 16 40 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 41 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 42 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 43 H 0.07 3.35 6.16 -2.39 -0.01 3.33 16 44 H 0.26 13.89 8.31 -92.70 -0.77 13.12 16 45 H 0.03 1.51 8.05 -2.39 -0.02 1.49 16 46 H 0.05 2.30 8.10 -2.39 -0.02 2.29 16 Total: -1.00 -66.73 383.85 1.30 -65.43 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: -0.90 Total: 10.42 kcal Atomic # 6 Polarization: -1.80 SS G_CDS: 7.70 Total: 5.90 kcal Atomic # 7 Polarization: -106.99 SS G_CDS: -7.48 Total: -114.47 kcal Atomic # 8 Polarization: -12.19 SS G_CDS: -0.06 Total: -12.25 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.96 kcal Total: -66.73 1.30 -65.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121663202.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.743 kcal (2) G-P(sol) polarization free energy of solvation -66.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.430 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds