Wall clock time and date at job start Wed Apr 1 2020 03:38:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.45885 * 2 1 4 4 C 1.53037 * 109.46365 * 119.98148 * 2 1 3 5 5 C 1.53196 * 109.31324 * 181.37172 * 4 2 1 6 6 N 1.46923 * 108.77455 * 305.35996 * 5 4 2 7 7 C 1.34775 * 120.63203 * 233.58717 * 6 5 4 8 8 O 1.21562 * 120.00063 * 174.20123 * 7 6 5 9 9 C 1.47825 * 120.00019 * 354.19771 * 7 6 5 10 10 C 1.41568 * 120.37253 * 319.13894 * 9 7 6 11 11 C 1.34824 * 120.11314 * 179.70842 * 10 9 7 12 12 N 1.36060 * 120.82240 * 0.56489 * 11 10 9 13 13 N 1.40255 * 133.72660 * 179.70791 * 12 11 10 14 14 N 1.28968 * 107.01736 * 180.02562 * 13 12 11 15 15 N 1.28539 * 110.85005 * 0.02562 * 14 13 12 16 16 C 1.32625 * 110.18031 * 359.97438 * 15 14 13 17 17 C 1.38459 * 120.37053 * 139.40635 * 9 7 6 18 18 C 1.46934 * 118.73536 * 53.61057 * 6 5 4 19 19 C 1.53048 * 109.44604 * 240.04112 * 2 1 3 20 20 H 1.08998 * 109.49371 * 298.56674 * 19 2 1 21 21 C 1.52993 * 109.49880 * 58.66951 * 19 2 1 22 22 N 1.46502 * 109.47505 * 184.83997 * 21 19 2 23 23 C 1.36935 * 120.00529 * 179.97438 * 22 21 19 24 24 H 1.07998 * 119.99769 * 0.02562 * 23 22 21 25 25 C 1.38813 * 119.99963 * 179.97438 * 23 22 21 26 26 N 1.31617 * 120.00348 * 0.02562 * 25 23 22 27 27 Si 1.86806 * 119.99488 * 180.02562 * 25 23 22 28 28 H 1.48490 * 109.47364 * 0.02562 * 27 25 23 29 29 H 1.48498 * 109.46796 * 120.00555 * 27 25 23 30 30 H 1.48504 * 109.46975 * 240.00008 * 27 25 23 31 31 H 1.08999 * 109.47103 * 300.01749 * 1 2 3 32 32 H 1.09001 * 109.47402 * 60.02030 * 1 2 3 33 33 H 1.09006 * 109.47094 * 180.02562 * 1 2 3 34 34 H 1.08998 * 109.50061 * 61.42034 * 4 2 1 35 35 H 1.08999 * 109.49476 * 301.31825 * 4 2 1 36 36 H 1.09001 * 109.58476 * 185.57209 * 5 4 2 37 37 H 1.08997 * 109.70139 * 65.21953 * 5 4 2 38 38 H 1.08001 * 119.94322 * 359.97066 * 10 9 7 39 39 H 1.07992 * 119.58901 * 180.25709 * 11 10 9 40 40 H 1.07995 * 120.51968 * 359.97438 * 17 9 7 41 41 H 1.08994 * 109.58713 * 66.18075 * 18 6 5 42 42 H 1.09004 * 109.58429 * 186.59982 * 18 6 5 43 43 H 1.09007 * 109.47066 * 304.83430 * 21 19 2 44 44 H 1.08995 * 109.47532 * 64.83334 * 21 19 2 45 45 H 0.97004 * 119.99537 * 359.97438 * 22 21 19 46 46 H 0.96996 * 120.00254 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0399 -0.7211 1.2498 5 6 3.5715 -0.6891 1.2638 6 7 4.0676 -1.2493 -0.0006 7 6 4.9617 -2.2579 -0.0009 8 8 5.2849 -2.7833 -1.0484 9 6 5.5492 -2.7251 1.2726 10 6 5.9330 -1.7944 2.2679 11 6 6.4630 -2.2267 3.4298 12 7 6.6477 -3.5548 3.6604 13 7 7.1659 -4.2889 4.7373 14 7 7.1018 -5.5348 4.4104 15 7 6.5972 -5.6744 3.2365 16 6 6.2971 -4.4888 2.7235 17 6 5.7354 -4.0776 1.5030 18 6 3.5710 -0.6887 -1.2647 19 6 2.0395 -0.7207 -1.2503 20 1 1.6973 -1.7555 -1.2386 21 6 1.5024 -0.0185 -2.4990 22 7 1.8942 -0.7746 -3.6911 23 6 1.5232 -0.3346 -4.9337 24 1 0.9420 0.5700 -5.0349 25 6 1.8949 -1.0508 -6.0632 26 7 2.6036 -2.1530 -5.9399 27 14 1.3893 -0.4501 -7.7582 28 1 0.6042 0.8033 -7.6254 29 1 2.6030 -0.1894 -8.5733 30 1 0.5594 -1.4864 -8.4234 31 1 -0.3633 0.5141 0.8898 32 1 -0.3634 0.5135 -0.8902 33 1 -0.3633 -1.0277 0.0005 34 1 1.6977 -1.7559 1.2380 35 1 1.6575 -0.2210 2.1397 36 1 3.9418 -1.2852 2.0978 37 1 3.9166 0.3395 1.3681 38 1 5.7972 -0.7366 2.0978 39 1 6.7490 -1.5095 4.1849 40 1 5.4536 -4.8051 0.7563 41 1 3.9141 0.3406 -1.3678 42 1 3.9411 -1.2846 -2.0991 43 1 0.4151 0.0370 -2.4452 44 1 1.9153 0.9886 -2.5555 45 1 2.4165 -1.5869 -3.6002 46 1 2.8631 -2.6536 -6.7291 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133031981.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:38:18 Heat of formation + Delta-G solvation = 132.707761 kcal Electronic energy + Delta-G solvation = -29984.627651 eV Core-core repulsion = 25913.025308 eV Total energy + Delta-G solvation = -4071.602342 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.81205 -40.87465 -39.00062 -38.00640 -35.24714 -34.42302 -33.89701 -32.66373 -31.91257 -31.01273 -29.92844 -28.52328 -26.43184 -25.33705 -25.04423 -23.54755 -23.25455 -23.18345 -21.37371 -20.62107 -19.68421 -18.99811 -18.39405 -17.31322 -17.11958 -16.88788 -16.35478 -15.74147 -15.56179 -15.04659 -14.92826 -14.58072 -14.26427 -14.01531 -13.80182 -13.66060 -13.57014 -13.33649 -13.12001 -12.89441 -12.79673 -12.64557 -12.48889 -12.09890 -11.92566 -11.88299 -11.64164 -11.46949 -11.09631 -10.99392 -10.88596 -10.73782 -10.58693 -10.43049 -10.28852 -10.11189 -9.90556 -9.64543 -9.15282 -8.90713 -8.75712 -6.92205 -5.75129 -3.05085 -0.34524 -0.10035 1.21846 1.64385 2.13995 2.46927 2.79904 3.23104 3.43423 3.48543 3.51344 3.51821 3.77814 3.96764 4.33409 4.35838 4.48876 4.57530 4.65125 4.70974 4.76534 4.93067 4.97312 5.07628 5.09162 5.15592 5.22366 5.39503 5.48229 5.53446 5.55368 5.59307 5.67468 5.77548 5.78632 5.81835 5.91789 6.03628 6.11777 6.22287 6.32878 6.40074 6.45255 6.72704 6.80106 7.13087 7.70193 7.83546 7.92052 8.42490 9.53798 10.10902 10.44696 11.47078 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.015739 B = 0.002545 C = 0.002284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1778.616666 B =10999.140598 C =12253.933336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.085 4.085 3 H 0.072 0.928 4 C -0.130 4.130 5 C 0.095 3.905 6 N -0.599 5.599 7 C 0.554 3.446 8 O -0.503 6.503 9 C -0.059 4.059 10 C -0.115 4.115 11 C 0.105 3.895 12 N -0.297 5.297 13 N -0.110 5.110 14 N -0.008 5.008 15 N -0.313 5.313 16 C 0.242 3.758 17 C -0.033 4.033 18 C 0.119 3.881 19 C -0.102 4.102 20 H 0.076 0.924 21 C 0.159 3.841 22 N -0.733 5.733 23 C -0.242 4.242 24 H 0.070 0.930 25 C -0.012 4.012 26 N -0.928 5.928 27 Si 0.905 3.095 28 H -0.281 1.281 29 H -0.292 1.292 30 H -0.292 1.292 31 H 0.049 0.951 32 H 0.066 0.934 33 H 0.054 0.946 34 H 0.068 0.932 35 H 0.075 0.925 36 H 0.084 0.916 37 H 0.076 0.924 38 H 0.177 0.823 39 H 0.188 0.812 40 H 0.179 0.821 41 H 0.072 0.928 42 H 0.108 0.892 43 H 0.028 0.972 44 H 0.019 0.981 45 H 0.385 0.615 46 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.815 5.510 23.190 24.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.104 4.104 3 H 0.091 0.909 4 C -0.168 4.168 5 C -0.027 4.027 6 N -0.332 5.332 7 C 0.339 3.661 8 O -0.377 6.377 9 C -0.070 4.070 10 C -0.139 4.139 11 C -0.022 4.022 12 N -0.077 5.077 13 N -0.093 5.093 14 N -0.001 5.001 15 N -0.173 5.173 16 C -0.012 4.012 17 C -0.056 4.056 18 C -0.001 4.001 19 C -0.122 4.122 20 H 0.094 0.906 21 C 0.031 3.969 22 N -0.378 5.378 23 C -0.373 4.373 24 H 0.088 0.912 25 C -0.209 4.209 26 N -0.577 5.577 27 Si 0.736 3.264 28 H -0.206 1.206 29 H -0.219 1.219 30 H -0.219 1.219 31 H 0.068 0.932 32 H 0.085 0.915 33 H 0.073 0.927 34 H 0.087 0.913 35 H 0.094 0.906 36 H 0.102 0.898 37 H 0.094 0.906 38 H 0.194 0.806 39 H 0.205 0.795 40 H 0.196 0.804 41 H 0.090 0.910 42 H 0.126 0.874 43 H 0.046 0.954 44 H 0.036 0.964 45 H 0.219 0.781 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 4.501 4.275 23.644 24.446 hybrid contribution -0.374 0.817 -1.373 1.640 sum 4.127 5.092 22.272 23.216 Atomic orbital electron populations 1.21883 0.94812 1.02068 1.01822 1.21101 0.96167 0.99354 0.93740 0.90918 1.21997 0.94079 1.01925 0.98774 1.22114 0.95520 0.99310 0.85781 1.48086 1.42034 1.34564 1.08483 1.17851 0.80237 0.80397 0.87567 1.90957 1.60082 1.54893 1.31767 1.20407 0.98173 0.93086 0.95383 1.21357 0.99268 1.02101 0.91126 1.21574 0.99429 0.81466 0.99719 1.49042 1.37291 1.08271 1.13103 1.82810 1.22925 0.97991 1.05587 1.77897 1.07119 1.09349 1.05691 1.75292 1.20074 1.18238 1.03690 1.22739 0.98994 0.86152 0.93357 1.20762 0.95974 0.96084 0.92799 1.21875 0.94075 0.99292 0.84906 1.21730 0.94151 1.00996 0.95315 0.90578 1.20719 0.96935 0.94030 0.85259 1.42421 1.65285 1.29299 1.00798 1.19221 1.27937 1.06457 0.83723 0.91202 1.24755 1.00768 0.97507 0.97825 1.69673 1.42212 1.17320 1.28458 0.86153 0.77648 0.77726 0.84847 1.20615 1.21876 1.21890 0.93186 0.91514 0.92725 0.91301 0.90594 0.89764 0.90593 0.80611 0.79472 0.80379 0.90959 0.87403 0.95449 0.96354 0.78124 0.93489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 8.82 37.16 0.33 -1.17 16 2 C -0.08 -0.84 2.23 -90.58 -0.20 -1.04 16 3 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 4 C -0.13 -0.96 5.36 -26.61 -0.14 -1.11 16 5 C 0.10 0.61 4.93 -3.71 -0.02 0.59 16 6 N -0.60 -6.36 2.97 -173.88 -0.52 -6.87 16 7 C 0.55 6.69 7.33 -12.34 -0.09 6.60 16 8 O -0.50 -8.62 16.36 5.31 0.09 -8.54 16 9 C -0.06 -0.50 5.11 -104.63 -0.53 -1.04 16 10 C -0.12 -0.56 7.35 -39.52 -0.29 -0.85 16 11 C 0.11 0.52 11.19 -16.89 -0.19 0.33 16 12 N -0.30 -2.77 3.94 -12.43 -0.05 -2.82 16 13 N -0.11 -1.28 13.98 60.35 0.84 -0.44 16 14 N -0.01 -0.10 13.35 60.35 0.81 0.70 16 15 N -0.31 -4.14 12.27 31.03 0.38 -3.76 16 16 C 0.24 2.63 8.02 -156.36 -1.25 1.37 16 17 C -0.03 -0.31 9.76 -38.65 -0.38 -0.69 16 18 C 0.12 1.67 5.53 -3.71 -0.02 1.65 16 19 C -0.10 -1.44 1.92 -90.50 -0.17 -1.61 16 20 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 21 C 0.16 2.89 5.41 -4.04 -0.02 2.87 16 22 N -0.73 -17.82 5.38 -59.91 -0.32 -18.14 16 23 C -0.24 -6.63 9.99 -15.06 -0.15 -6.78 16 24 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 25 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 26 N -0.93 -28.12 13.06 55.49 0.72 -27.39 16 27 Si 0.91 22.25 29.55 -169.99 -5.02 17.22 16 28 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 29 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 30 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.76 6.29 -51.93 -0.33 0.43 16 33 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.08 0.37 4.77 -51.93 -0.25 0.13 16 37 H 0.08 0.34 8.12 -51.93 -0.42 -0.08 16 38 H 0.18 0.34 6.69 -52.49 -0.35 -0.01 16 39 H 0.19 0.22 8.06 -52.49 -0.42 -0.20 16 40 H 0.18 1.68 8.06 -52.49 -0.42 1.26 16 41 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 42 H 0.11 1.98 6.20 -51.93 -0.32 1.66 16 43 H 0.03 0.51 6.15 -51.93 -0.32 0.19 16 44 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 45 H 0.38 10.04 6.89 -40.82 -0.28 9.76 16 46 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 373.11 15.07 5.62 5.62 Total: -1.00 -35.38 373.11 -6.72 -42.10 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -6.04 Total: 3.62 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: -3.23 Total: -1.30 kcal Atomic # 7 Polarization: -60.60 SS G_CDS: 1.87 Total: -58.73 kcal Atomic # 8 Polarization: -8.62 SS G_CDS: 0.09 Total: -8.54 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -35.38 -6.72 -42.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133031981.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.809 kcal (2) G-P(sol) polarization free energy of solvation -35.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds