Wall clock time and date at job start Wed Apr 1 2020 03:41:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.52708 * 2 1 4 4 C 1.53190 * 109.50986 * 239.92116 * 2 1 3 5 5 N 1.46923 * 108.76690 * 294.69895 * 4 2 1 6 6 C 1.34777 * 120.63102 * 126.36388 * 5 4 2 7 7 O 1.21568 * 119.99797 * 354.18766 * 6 5 4 8 8 C 1.47728 * 120.00414 * 174.19009 * 6 5 4 9 9 C 1.40115 * 120.35198 * 138.66636 * 8 6 5 10 10 N 1.31259 * 121.14512 * 179.75952 * 9 8 6 11 11 C 1.32724 * 121.80161 * 0.51476 * 10 9 8 12 12 N 1.37116 * 133.40440 * 179.77535 * 11 10 9 13 13 H 0.97005 * 126.58830 * 359.97438 * 12 11 10 14 14 N 1.40189 * 106.81829 * 179.97438 * 12 11 10 15 15 N 1.28665 * 109.50861 * 0.02562 * 14 12 11 16 16 C 1.35329 * 110.00093 * 0.02562 * 15 14 12 17 17 C 1.39433 * 120.34464 * 318.94490 * 8 6 5 18 18 C 1.46933 * 118.74107 * 306.38475 * 5 4 2 19 19 C 1.53194 * 108.77202 * 53.60540 * 18 5 4 20 20 C 1.53035 * 109.31430 * 305.36459 * 19 18 5 21 21 H 1.08997 * 109.46133 * 301.36183 * 20 19 18 22 22 C 1.53000 * 109.45933 * 181.38584 * 20 19 18 23 23 N 1.46499 * 109.47125 * 64.97132 * 22 20 19 24 24 C 1.36931 * 119.99967 * 179.97438 * 23 22 20 25 25 H 1.08001 * 120.00514 * 359.97438 * 24 23 22 26 26 C 1.38814 * 119.99976 * 180.02562 * 24 23 22 27 27 N 1.31620 * 119.99947 * 359.97438 * 26 24 23 28 28 Si 1.86803 * 120.00342 * 180.02562 * 26 24 23 29 29 H 1.48489 * 109.47252 * 179.97438 * 28 26 24 30 30 H 1.48504 * 109.46557 * 299.99748 * 28 26 24 31 31 H 1.48500 * 109.47108 * 59.99329 * 28 26 24 32 32 H 1.08997 * 109.47169 * 299.92400 * 1 2 3 33 33 H 1.09000 * 109.46762 * 59.92418 * 1 2 3 34 34 H 1.08998 * 109.47100 * 179.91578 * 1 2 3 35 35 H 1.09009 * 109.59490 * 174.91355 * 4 2 1 36 36 H 1.08996 * 109.70399 * 54.55307 * 4 2 1 37 37 H 1.07995 * 119.42779 * 359.97438 * 9 8 6 38 38 H 1.07999 * 120.95742 * 0.02562 * 17 8 6 39 39 H 1.08998 * 109.58050 * 293.81983 * 18 5 4 40 40 H 1.08998 * 109.58453 * 173.39423 * 18 5 4 41 41 H 1.09004 * 109.49130 * 185.41036 * 19 18 5 42 42 H 1.08997 * 109.52029 * 65.33712 * 19 18 5 43 43 H 1.09003 * 109.47338 * 304.97309 * 22 20 19 44 44 H 1.09002 * 109.47340 * 184.97650 * 22 20 19 45 45 H 0.96999 * 119.99831 * 0.02562 * 23 22 20 46 46 H 0.96996 * 119.99887 * 0.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0416 -0.7237 -1.2495 5 7 1.6515 -2.1379 -1.1696 6 6 0.9741 -2.7215 -2.1781 7 8 0.5878 -2.0534 -3.1174 8 6 0.7008 -4.1728 -2.1420 9 6 -0.5477 -4.6683 -2.5404 10 7 -0.8057 -5.9551 -2.5191 11 6 0.0939 -6.8422 -2.1123 12 7 0.0821 -8.2078 -1.9901 13 1 -0.6560 -8.8009 -2.2012 14 7 1.3416 -8.5822 -1.5016 15 7 2.0677 -7.5329 -1.3365 16 6 1.3709 -6.4277 -1.6889 17 6 1.6808 -5.0635 -1.7056 18 6 2.0137 -2.9040 0.0308 19 6 1.5026 -2.1556 1.2660 20 6 2.0408 -0.7231 1.2485 21 1 3.1304 -0.7447 1.2353 22 6 1.5606 0.0171 2.4984 23 7 2.1470 -0.6035 3.6889 24 6 1.8589 -0.1070 4.9321 25 1 1.1997 0.7422 5.0351 26 6 2.4150 -0.6947 6.0601 27 7 3.2188 -1.7294 5.9347 28 14 2.0214 -0.0180 7.7562 29 1 2.7346 -0.8163 8.7853 30 1 2.4586 1.3989 7.8374 31 1 0.5578 -0.0989 7.9940 32 1 -0.3633 0.5126 0.8906 33 1 -0.3633 0.5150 -0.8893 34 1 -0.3633 -1.0276 -0.0015 35 1 3.1279 -0.6464 -1.2977 36 1 1.6034 -0.2735 -2.1402 37 1 -1.3099 -3.9798 -2.8742 38 1 2.6507 -4.7103 -1.3878 39 1 3.0975 -3.0044 0.0869 40 1 1.5548 -3.8917 -0.0139 41 1 1.8474 -2.6629 2.1671 42 1 0.4129 -2.1351 1.2544 43 1 0.4736 -0.0379 2.5582 44 1 1.8690 1.0611 2.4435 45 1 2.7399 -1.3655 3.5964 46 1 3.4228 -2.0810 5.0540 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184578310.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:41:59 Heat of formation + Delta-G solvation = 84.512847 kcal Electronic energy + Delta-G solvation = -30185.429757 eV Core-core repulsion = 26111.737526 eV Total energy + Delta-G solvation = -4073.692231 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.60710 -41.75778 -39.95373 -38.96654 -36.85286 -35.62220 -34.81910 -33.45011 -32.69587 -31.90034 -31.82445 -28.35988 -27.97117 -26.29533 -25.67908 -25.05468 -24.32172 -23.87795 -23.05190 -21.58183 -20.06702 -19.87892 -19.34395 -18.94210 -18.30333 -17.54090 -17.27604 -17.06604 -16.77886 -16.37582 -16.09010 -15.65538 -15.48409 -15.31048 -14.92532 -14.81120 -14.44171 -14.37467 -14.16258 -14.15318 -13.77270 -13.65504 -13.57349 -13.20439 -12.89281 -12.77256 -12.63671 -12.60486 -12.39518 -12.09184 -11.90642 -11.76139 -11.54490 -11.43465 -11.26226 -11.12130 -10.88561 -10.77195 -10.52859 -10.24430 -9.69872 -9.06335 -8.37438 -5.30585 -1.03439 -0.54197 0.82757 0.85965 1.45437 1.58985 1.68208 1.78804 1.84878 2.29610 2.60029 2.72054 2.96901 3.05527 3.31564 3.41177 3.42447 3.62284 3.65211 3.70704 3.79794 3.97852 4.12926 4.16408 4.21692 4.33345 4.38760 4.40645 4.51554 4.62636 4.66700 4.75501 4.78781 4.81304 4.92705 4.94770 5.04230 5.10111 5.16231 5.23096 5.28345 5.45237 5.57557 5.60708 5.61966 6.19800 6.29773 6.53225 6.53774 6.93858 7.13266 8.04404 8.14426 9.14900 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.011548 B = 0.002828 C = 0.002405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2424.145720 B = 9898.551935 C =11641.474027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.090 4.090 3 H 0.093 0.907 4 C 0.121 3.879 5 N -0.592 5.592 6 C 0.578 3.422 7 O -0.556 6.556 8 C -0.200 4.200 9 C 0.236 3.764 10 N -0.494 5.494 11 C 0.286 3.714 12 N -0.467 5.467 13 H 0.468 0.532 14 N 0.012 4.988 15 N -0.210 5.210 16 C -0.087 4.087 17 C 0.062 3.938 18 C 0.104 3.896 19 C -0.122 4.122 20 C -0.079 4.079 21 H 0.071 0.929 22 C 0.164 3.836 23 N -0.754 5.754 24 C -0.334 4.334 25 H 0.061 0.939 26 C -0.102 4.102 27 N -0.974 5.974 28 Si 1.124 2.876 29 H -0.293 1.293 30 H -0.279 1.279 31 H -0.280 1.280 32 H 0.047 0.953 33 H 0.062 0.938 34 H 0.049 0.951 35 H 0.089 0.911 36 H 0.096 0.904 37 H 0.203 0.797 38 H 0.178 0.822 39 H 0.095 0.905 40 H 0.095 0.905 41 H 0.059 0.941 42 H 0.063 0.937 43 H 0.017 0.983 44 H 0.013 0.987 45 H 0.363 0.637 46 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.162 -6.965 -21.421 23.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.110 4.110 3 H 0.111 0.889 4 C -0.001 4.001 5 N -0.324 5.324 6 C 0.365 3.635 7 O -0.435 6.435 8 C -0.209 4.209 9 C 0.063 3.937 10 N -0.208 5.208 11 C 0.040 3.960 12 N -0.194 5.194 13 H 0.320 0.680 14 N 0.029 4.971 15 N -0.091 5.091 16 C -0.212 4.212 17 C 0.032 3.968 18 C -0.018 4.018 19 C -0.160 4.160 20 C -0.098 4.098 21 H 0.090 0.910 22 C 0.037 3.963 23 N -0.399 5.399 24 C -0.466 4.466 25 H 0.079 0.921 26 C -0.293 4.293 27 N -0.622 5.622 28 Si 0.949 3.051 29 H -0.219 1.219 30 H -0.205 1.205 31 H -0.206 1.206 32 H 0.066 0.934 33 H 0.081 0.919 34 H 0.068 0.932 35 H 0.107 0.893 36 H 0.114 0.886 37 H 0.220 0.780 38 H 0.195 0.805 39 H 0.113 0.887 40 H 0.113 0.887 41 H 0.078 0.922 42 H 0.081 0.919 43 H 0.035 0.965 44 H 0.031 0.969 45 H 0.195 0.805 46 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -6.094 -8.160 -20.087 22.521 hybrid contribution -0.396 0.476 -1.408 1.538 sum -6.491 -7.684 -21.495 23.732 Atomic orbital electron populations 1.21811 0.94937 1.01562 1.01514 1.21413 0.96518 0.99939 0.93124 0.88912 1.21776 1.00661 0.79117 0.98529 1.48007 1.54828 1.12115 1.17410 1.17807 0.77425 0.86083 0.82143 1.90806 1.52606 1.64811 1.35308 1.20662 0.97417 0.94273 1.08513 1.23336 0.94445 0.89303 0.86661 1.66869 1.32381 1.02092 1.19419 1.19794 0.92223 0.87215 0.96757 1.47553 1.15471 1.03776 1.52632 0.68016 1.81709 0.87015 1.17186 1.11213 1.74912 1.24630 0.96017 1.13570 1.20557 0.93861 0.95378 1.11445 1.21431 1.00308 0.87715 0.87368 1.22164 1.01812 0.95039 0.82821 1.21850 1.01112 0.95619 0.97440 1.21215 1.00142 0.94823 0.93618 0.91013 1.20787 0.95288 0.94607 0.85577 1.42569 1.57418 1.37537 1.02358 1.20358 1.26221 1.13183 0.86846 0.92066 1.27098 0.98191 0.98017 1.06042 1.70994 1.39825 1.26729 1.24644 0.82664 0.75964 0.74995 0.71427 1.21855 1.20490 1.20606 0.93359 0.91881 0.93196 0.89331 0.88575 0.78024 0.80450 0.88697 0.88740 0.92242 0.91865 0.96538 0.96911 0.80471 0.94411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.15 8.38 71.98 0.60 -2.55 16 2 C -0.09 -1.92 2.72 -10.71 -0.03 -1.95 16 3 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 4 C 0.12 2.18 5.84 86.36 0.50 2.69 16 5 N -0.59 -10.85 2.41 -822.43 -1.98 -12.83 16 6 C 0.58 11.38 7.32 86.75 0.63 12.01 16 7 O -0.56 -13.93 16.37 -3.93 -0.06 -13.99 16 8 C -0.20 -3.37 5.10 -20.03 -0.10 -3.47 16 9 C 0.24 3.77 10.80 85.23 0.92 4.69 16 10 N -0.49 -8.77 10.37 -191.99 -1.99 -10.76 16 11 C 0.29 5.30 8.49 134.00 1.14 6.43 16 12 N -0.47 -7.13 7.52 -55.37 -0.42 -7.55 16 13 H 0.47 3.78 8.96 -213.26 -1.91 1.86 16 14 N 0.01 0.23 13.82 37.02 0.51 0.75 16 15 N -0.21 -4.65 12.40 -52.15 -0.65 -5.30 16 16 C -0.09 -1.70 7.27 39.63 0.29 -1.42 16 17 C 0.06 1.01 7.56 22.96 0.17 1.18 16 18 C 0.10 1.89 4.94 86.36 0.43 2.32 16 19 C -0.12 -3.14 4.90 30.67 0.15 -2.99 16 20 C -0.08 -2.16 1.96 -10.77 -0.02 -2.18 16 21 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 22 C 0.16 6.19 5.19 86.38 0.45 6.64 16 23 N -0.75 -36.81 5.32 -343.45 -1.83 -38.64 16 24 C -0.33 -18.69 9.99 84.04 0.84 -17.85 16 25 H 0.06 3.37 7.83 -2.91 -0.02 3.35 16 26 C -0.10 -5.86 5.50 84.86 0.47 -5.39 16 27 N -0.97 -59.90 13.70 21.65 0.30 -59.61 16 28 Si 1.12 51.59 29.92 68.60 2.05 53.64 16 29 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 30 H -0.28 -11.91 7.11 99.48 0.71 -11.21 16 31 H -0.28 -11.99 7.11 99.48 0.71 -11.29 16 32 H 0.05 1.20 6.58 -2.39 -0.02 1.19 16 33 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.05 1.16 5.97 -2.39 -0.01 1.15 16 35 H 0.09 1.35 8.14 -2.38 -0.02 1.33 16 36 H 0.10 1.81 6.99 -2.39 -0.02 1.80 16 37 H 0.20 2.42 8.06 -2.91 -0.02 2.39 16 38 H 0.18 2.21 6.73 -2.91 -0.02 2.19 16 39 H 0.09 1.47 8.13 -2.39 -0.02 1.45 16 40 H 0.09 1.56 4.79 -2.39 -0.01 1.55 16 41 H 0.06 1.86 7.15 -2.38 -0.02 1.84 16 42 H 0.06 1.71 6.34 -2.39 -0.02 1.70 16 43 H 0.02 0.66 6.74 -2.39 -0.02 0.64 16 44 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 45 H 0.36 18.03 5.68 -92.71 -0.53 17.50 16 46 H 0.25 14.89 6.77 -92.71 -0.63 14.26 16 Total: -1.00 -73.01 366.53 1.14 -71.87 By element: Atomic # 1 Polarization: 25.48 SS G_CDS: -1.23 Total: 24.25 kcal Atomic # 6 Polarization: -8.26 SS G_CDS: 6.44 Total: -1.82 kcal Atomic # 7 Polarization: -127.89 SS G_CDS: -6.05 Total: -133.94 kcal Atomic # 8 Polarization: -13.93 SS G_CDS: -0.06 Total: -13.99 kcal Atomic # 14 Polarization: 51.59 SS G_CDS: 2.05 Total: 53.64 kcal Total: -73.01 1.14 -71.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184578310.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.378 kcal (2) G-P(sol) polarization free energy of solvation -73.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.866 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds