Wall clock time and date at job start Wed Apr 1 2020 03:43:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09004 * 109.49439 * 2 1 4 4 C 1.53184 * 109.49586 * 239.94036 * 2 1 3 5 5 N 1.46923 * 108.77673 * 185.41492 * 4 2 1 6 6 C 1.34776 * 120.63503 * 233.58598 * 5 4 2 7 7 O 1.21550 * 119.99603 * 5.86961 * 6 5 4 8 8 C 1.47871 * 120.00336 * 185.59552 * 6 5 4 9 9 C 1.39451 * 121.11657 * 53.81682 * 8 6 5 10 10 C 1.38618 * 119.37390 * 179.72910 * 9 8 6 11 11 N 1.31580 * 121.63768 * 0.56707 * 10 9 8 12 12 C 1.32207 * 121.86626 * 359.70708 * 11 10 9 13 13 N 1.37210 * 134.67589 * 179.97438 * 12 11 10 14 14 H 0.97010 * 125.87102 * 0.02615 * 13 12 11 15 15 N 1.28773 * 108.26822 * 180.02562 * 13 12 11 16 16 N 1.28699 * 111.75779 * 359.97438 * 15 13 12 17 17 C 1.34394 * 109.14806 * 0.02562 * 16 15 13 18 18 C 1.46924 * 118.73963 * 53.85575 * 5 4 2 19 19 C 1.53630 * 108.54448 * 306.09857 * 18 5 4 20 20 C 1.53035 * 109.49559 * 120.09880 * 2 1 3 21 21 H 1.08998 * 109.45934 * 61.29829 * 20 2 1 22 22 C 1.53001 * 109.46213 * 301.33627 * 20 2 1 23 23 N 1.46498 * 109.47378 * 175.00282 * 22 20 2 24 24 C 1.36934 * 120.00118 * 180.02562 * 23 22 20 25 25 H 1.07997 * 120.00365 * 359.97438 * 24 23 22 26 26 C 1.38818 * 119.99810 * 179.97438 * 24 23 22 27 27 N 1.31623 * 120.00047 * 0.02562 * 26 24 23 28 28 Si 1.86796 * 119.99859 * 179.97438 * 26 24 23 29 29 H 1.48500 * 109.47318 * 60.00221 * 28 26 24 30 30 H 1.48499 * 109.47088 * 179.97438 * 28 26 24 31 31 H 1.48504 * 109.47426 * 300.00118 * 28 26 24 32 32 H 1.08994 * 109.47205 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.47068 * 300.06733 * 1 2 3 34 34 H 1.09007 * 109.46849 * 60.06218 * 1 2 3 35 35 H 1.09001 * 109.59294 * 65.62665 * 4 2 1 36 36 H 1.09006 * 109.70640 * 305.26743 * 4 2 1 37 37 H 1.08003 * 120.30793 * 359.97438 * 9 8 6 38 38 H 1.08004 * 119.17968 * 180.26061 * 10 9 8 39 39 H 1.09005 * 109.59029 * 65.92671 * 18 5 4 40 40 H 1.09006 * 109.59280 * 186.35731 * 18 5 4 41 41 H 1.09007 * 109.63020 * 294.86647 * 19 18 5 42 42 H 1.08997 * 109.46437 * 174.74106 * 19 18 5 43 43 H 1.09002 * 109.47076 * 295.00223 * 22 20 2 44 44 H 1.08998 * 109.46938 * 55.00021 * 22 20 2 45 45 H 0.97003 * 119.99945 * 0.02562 * 23 22 20 46 46 H 0.96996 * 119.99645 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7233 -1.2498 5 7 3.5046 -0.8287 -1.1699 6 6 4.2811 -0.3857 -2.1784 7 8 3.7810 0.2024 -3.1172 8 6 5.7423 -0.6097 -2.1399 9 6 6.2709 -1.8875 -1.9600 10 6 7.6465 -2.0569 -1.9352 11 7 8.4698 -1.0389 -2.0665 12 6 8.0306 0.1967 -2.2343 13 7 8.6304 1.4204 -2.3939 14 1 9.5859 1.5873 -2.4105 15 7 7.7071 2.3094 -2.5180 16 7 6.5319 1.7885 -2.4561 17 6 6.6468 0.4614 -2.2782 18 6 4.1050 -1.4318 0.0278 19 6 3.5709 -0.6954 1.2658 20 6 2.0408 -0.7235 1.2481 21 1 1.6967 -1.7576 1.2347 22 6 1.5037 -0.0240 2.4984 23 7 1.8931 -0.7842 3.6886 24 6 1.5216 -0.3472 4.9320 25 1 0.9420 0.5582 5.0354 26 6 1.8902 -1.0679 6.0598 27 7 2.5971 -2.1710 5.9339 28 14 1.3841 -0.4713 7.7560 29 1 -0.0974 -0.4102 7.8377 30 1 1.8977 -1.4110 8.7848 31 1 1.9491 0.8812 7.9941 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5149 0.8894 34 1 -0.3633 0.5129 -0.8906 35 1 1.7638 -0.1572 -2.1390 36 1 1.6054 -1.7211 -1.3012 37 1 5.6148 -2.7376 -1.8451 38 1 8.0526 -3.0485 -1.8000 39 1 3.8338 -2.4862 0.0812 40 1 5.1897 -1.3332 -0.0179 41 1 3.9159 0.3385 1.2541 42 1 3.9334 -1.1898 2.1670 43 1 1.9184 0.9823 2.5582 44 1 0.4166 0.0337 2.4437 45 1 2.4141 -1.5972 3.5959 46 1 2.8543 -2.6747 6.7219 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184797421.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:43:08 Heat of formation + Delta-G solvation = 106.144963 kcal Electronic energy + Delta-G solvation = -30176.278751 eV Core-core repulsion = 26103.524559 eV Total energy + Delta-G solvation = -4072.754192 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.79223 -40.65979 -39.23417 -38.01668 -35.09884 -34.63346 -33.67007 -32.29330 -31.91194 -31.23871 -30.33083 -27.22784 -26.93760 -25.54415 -24.36686 -23.86731 -23.23320 -22.54114 -21.45621 -20.63538 -19.65665 -19.10918 -18.38907 -17.66720 -17.09420 -16.98474 -16.29775 -15.95861 -15.53641 -15.00692 -14.83063 -14.44682 -14.06355 -13.97367 -13.68389 -13.67941 -13.50339 -13.11914 -12.95811 -12.70654 -12.60575 -12.49015 -12.09634 -12.05154 -11.90845 -11.77760 -11.62580 -11.00732 -10.91559 -10.81442 -10.57884 -10.41801 -10.28992 -10.20621 -9.99926 -9.85864 -9.64089 -9.63048 -9.43151 -8.86852 -8.70226 -6.91367 -5.77993 -3.05556 -0.26646 0.46158 1.73401 1.82724 2.35568 2.67541 3.10104 3.32947 3.43407 3.47892 3.48729 3.79603 3.91858 4.08851 4.36210 4.57851 4.69746 4.74276 4.86103 4.92426 5.01805 5.04460 5.06499 5.26426 5.32225 5.38447 5.47678 5.56497 5.68258 5.73362 5.75955 5.83115 5.88575 5.95487 6.05699 6.18512 6.19912 6.28489 6.31457 6.41695 6.49477 6.59601 6.82679 6.92867 7.05850 7.16756 7.69348 7.75704 7.87520 8.41727 9.52860 10.11023 10.45718 11.45001 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.012411 B = 0.002764 C = 0.002510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2255.516093 B =10128.365751 C =11151.990979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.098 4.098 3 H 0.074 0.926 4 C 0.119 3.881 5 N -0.597 5.597 6 C 0.561 3.439 7 O -0.516 6.516 8 C 0.003 3.997 9 C -0.144 4.144 10 C 0.166 3.834 11 N -0.462 5.462 12 C 0.219 3.781 13 N -0.405 5.405 14 H 0.459 0.541 15 N 0.007 4.993 16 N -0.222 5.222 17 C -0.005 4.005 18 C 0.100 3.900 19 C -0.126 4.126 20 C -0.088 4.088 21 H 0.073 0.927 22 C 0.156 3.844 23 N -0.731 5.731 24 C -0.238 4.238 25 H 0.069 0.931 26 C -0.014 4.014 27 N -0.935 5.935 28 Si 0.906 3.094 29 H -0.286 1.286 30 H -0.291 1.291 31 H -0.286 1.286 32 H 0.056 0.944 33 H 0.068 0.932 34 H 0.052 0.948 35 H 0.092 0.908 36 H 0.072 0.928 37 H 0.162 0.838 38 H 0.185 0.815 39 H 0.078 0.922 40 H 0.080 0.920 41 H 0.064 0.936 42 H 0.090 0.910 43 H 0.016 0.984 44 H 0.025 0.975 45 H 0.383 0.617 46 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.282 -1.554 -19.462 22.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.118 4.118 3 H 0.093 0.907 4 C -0.003 4.003 5 N -0.329 5.329 6 C 0.347 3.653 7 O -0.391 6.391 8 C -0.013 4.013 9 C -0.167 4.167 10 C -0.006 4.006 11 N -0.176 5.176 12 C -0.024 4.024 13 N -0.135 5.135 14 H 0.307 0.693 15 N 0.024 4.976 16 N -0.098 5.098 17 C -0.134 4.134 18 C -0.022 4.022 19 C -0.164 4.164 20 C -0.107 4.107 21 H 0.092 0.908 22 C 0.028 3.972 23 N -0.376 5.376 24 C -0.369 4.369 25 H 0.087 0.913 26 C -0.210 4.210 27 N -0.584 5.584 28 Si 0.737 3.263 29 H -0.213 1.213 30 H -0.217 1.217 31 H -0.213 1.213 32 H 0.075 0.925 33 H 0.087 0.913 34 H 0.071 0.929 35 H 0.110 0.890 36 H 0.090 0.910 37 H 0.180 0.820 38 H 0.201 0.799 39 H 0.096 0.904 40 H 0.098 0.902 41 H 0.082 0.918 42 H 0.109 0.891 43 H 0.034 0.966 44 H 0.043 0.957 45 H 0.217 0.783 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 10.461 0.326 -20.019 22.590 hybrid contribution 0.099 -0.787 1.238 1.470 sum 10.560 -0.461 -18.782 21.552 Atomic orbital electron populations 1.21828 0.94223 1.02203 1.02163 1.21466 0.96228 1.00110 0.93977 0.90718 1.21786 0.77687 1.01187 0.99622 1.48063 1.07294 1.59866 1.17722 1.17905 0.85121 0.79156 0.83119 1.90832 1.74026 1.39784 1.34500 1.19526 0.93718 0.91478 0.96617 1.22411 0.97410 0.96584 1.00290 1.22869 0.88845 0.96838 0.92043 1.66326 1.40699 0.96382 1.14154 1.19836 0.89449 0.88841 1.04315 1.44696 1.11536 1.02695 1.54585 0.69310 1.78228 0.91870 1.15692 1.11824 1.75479 1.12667 1.05594 1.16048 1.20100 0.92883 0.93142 1.07242 1.22147 0.98073 0.97681 0.84321 1.22012 0.96225 1.01156 0.96984 1.21338 0.94527 1.00230 0.94615 0.90823 1.20758 0.96722 0.94081 0.85589 1.42360 1.65373 1.29010 1.00844 1.19190 1.27626 1.06209 0.83870 0.91345 1.24709 1.00952 0.97547 0.97764 1.69637 1.42796 1.17311 1.28655 0.86283 0.78073 0.77656 0.84277 1.21304 1.21706 1.21325 0.92462 0.91264 0.92922 0.88958 0.90969 0.82030 0.79853 0.90401 0.90191 0.91759 0.89127 0.96574 0.95710 0.78342 0.93530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 8.81 37.16 0.33 -1.40 16 2 C -0.10 -1.26 2.41 -90.50 -0.22 -1.48 16 3 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 4 C 0.12 1.40 5.72 -3.72 -0.02 1.38 16 5 N -0.60 -7.17 2.97 -173.60 -0.51 -7.69 16 6 C 0.56 7.65 7.24 -12.32 -0.09 7.56 16 7 O -0.52 -8.79 16.51 5.32 0.09 -8.70 16 8 C 0.00 0.04 4.65 -104.51 -0.49 -0.45 16 9 C -0.14 -1.07 7.88 -38.99 -0.31 -1.38 16 10 C 0.17 1.08 11.14 -17.52 -0.20 0.89 16 11 N -0.46 -4.21 10.35 -12.38 -0.13 -4.34 16 12 C 0.22 2.35 8.56 -156.21 -1.34 1.01 16 13 N -0.40 -3.65 7.06 31.11 0.22 -3.43 16 14 H 0.46 2.16 8.96 -190.25 -1.71 0.45 16 15 N 0.01 0.08 13.29 60.35 0.80 0.88 16 16 N -0.22 -3.27 12.42 32.24 0.40 -2.87 16 17 C 0.00 -0.07 7.15 -84.72 -0.61 -0.67 16 18 C 0.10 1.09 5.65 -3.48 -0.02 1.07 16 19 C -0.13 -1.79 5.26 -26.38 -0.14 -1.93 16 20 C -0.09 -1.31 1.73 -90.58 -0.16 -1.47 16 21 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 22 C 0.16 3.01 5.41 -4.04 -0.02 2.99 16 23 N -0.73 -17.81 5.32 -59.91 -0.32 -18.13 16 24 C -0.24 -6.55 9.99 -15.06 -0.15 -6.70 16 25 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 26 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 27 N -0.94 -27.55 13.06 55.49 0.72 -26.82 16 28 Si 0.91 22.21 29.55 -169.99 -5.02 17.19 16 29 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 30 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 31 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.89 6.30 -51.93 -0.33 0.57 16 34 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.09 1.16 7.00 -51.93 -0.36 0.80 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.16 0.74 7.79 -52.48 -0.41 0.34 16 38 H 0.18 0.44 8.06 -52.48 -0.42 0.01 16 39 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.08 0.78 5.36 -51.93 -0.28 0.50 16 41 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.09 1.46 7.15 -51.93 -0.37 1.09 16 43 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.03 0.49 6.14 -51.93 -0.32 0.17 16 45 H 0.38 9.62 6.84 -40.82 -0.28 9.34 16 46 H 0.25 7.30 8.31 -40.82 -0.34 6.97 16 LS Contribution 373.84 15.07 5.63 5.63 Total: -1.00 -35.73 373.84 -9.04 -44.77 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -7.40 Total: 4.58 kcal Atomic # 6 Polarization: 2.45 SS G_CDS: -3.52 Total: -1.07 kcal Atomic # 7 Polarization: -63.58 SS G_CDS: 1.18 Total: -62.39 kcal Atomic # 8 Polarization: -8.79 SS G_CDS: 0.09 Total: -8.70 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -35.73 -9.04 -44.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184797421.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.916 kcal (2) G-P(sol) polarization free energy of solvation -35.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.771 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds