Wall clock time and date at job start Wed Apr 1 2020 03:39:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.45986 * 2 1 4 4 C 1.53047 * 109.46004 * 240.04547 * 2 1 3 5 5 C 1.53622 * 109.24125 * 178.48987 * 4 2 1 6 6 N 1.46926 * 108.54428 * 54.85402 * 5 4 2 7 7 C 1.34777 * 120.62680 * 126.36606 * 6 5 4 8 8 O 1.21618 * 120.00134 * 185.62705 * 7 6 5 9 9 C 1.47322 * 119.99969 * 5.63101 * 7 6 5 10 10 C 1.39003 * 120.90476 * 38.64508 * 9 7 6 11 11 C 1.39721 * 119.28930 * 179.97438 * 10 9 7 12 12 C 1.35258 * 121.07981 * 0.02562 * 11 10 9 13 13 N 1.35719 * 121.57303 * 359.97438 * 12 11 10 14 14 N 1.40205 * 134.08594 * 179.97438 * 13 12 11 15 15 N 1.29020 * 106.96000 * 180.02562 * 14 13 12 16 16 N 1.28598 * 110.78732 * 359.97438 * 15 14 13 17 17 C 1.32043 * 110.21078 * 0.02562 * 16 15 14 18 18 C 1.46924 * 118.73974 * 306.09589 * 6 5 4 19 19 H 1.08999 * 109.58566 * 294.07079 * 18 6 5 20 20 C 1.52999 * 109.58322 * 173.64603 * 18 6 5 21 21 N 1.46500 * 109.47267 * 69.63296 * 20 18 6 22 22 C 1.36938 * 120.00225 * 175.29240 * 21 20 18 23 23 H 1.07997 * 119.99655 * 0.02562 * 22 21 20 24 24 C 1.38813 * 120.00042 * 179.97438 * 22 21 20 25 25 N 1.31621 * 120.00040 * 0.02562 * 24 22 21 26 26 Si 1.86794 * 120.00095 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.47233 * 59.99818 * 26 24 22 28 28 H 1.48497 * 109.47306 * 180.02562 * 26 24 22 29 29 H 1.48507 * 109.47043 * 300.00530 * 26 24 22 30 30 C 1.53036 * 109.46315 * 119.97915 * 2 1 3 31 31 H 1.08999 * 109.47412 * 300.01943 * 1 2 3 32 32 H 1.08998 * 109.47313 * 60.02897 * 1 2 3 33 33 H 1.09001 * 109.46790 * 180.02562 * 1 2 3 34 34 H 1.08997 * 109.49649 * 298.56277 * 4 2 1 35 35 H 1.09003 * 109.49572 * 58.62747 * 4 2 1 36 36 H 1.08999 * 109.73843 * 295.11773 * 5 4 2 37 37 H 1.09003 * 109.66465 * 174.55323 * 5 4 2 38 38 H 1.07997 * 120.35658 * 0.02562 * 10 9 7 39 39 H 1.07999 * 119.45880 * 179.71752 * 11 10 9 40 40 H 1.07997 * 119.21025 * 179.97438 * 12 11 10 41 41 H 1.08999 * 109.46580 * 189.62694 * 20 18 6 42 42 H 1.08991 * 109.47563 * 309.62773 * 20 18 6 43 43 H 0.97001 * 119.99497 * 355.29589 * 21 20 18 44 44 H 0.96996 * 120.00111 * 179.97438 * 25 24 22 45 45 H 1.08997 * 109.50019 * 61.43048 * 30 2 1 46 46 H 1.09001 * 109.49473 * 301.33390 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0399 -0.7205 -1.2503 5 6 3.5756 -0.6846 -1.2644 6 7 4.0679 -1.2488 -0.0003 7 6 4.9621 -2.2571 -0.0005 8 8 5.2847 -2.7841 1.0470 9 6 5.5489 -2.7210 -1.2698 10 6 5.8881 -1.8189 -2.2714 11 6 6.4430 -2.2958 -3.4616 12 6 6.6538 -3.6180 -3.6532 13 7 6.3374 -4.5331 -2.7021 14 7 6.4381 -5.9291 -2.6198 15 7 5.9783 -6.2722 -1.4642 16 7 5.5952 -5.2395 -0.8006 17 6 5.7910 -4.1430 -1.5098 18 6 3.5714 -0.6888 1.2641 19 1 3.9143 0.3407 1.3674 20 6 4.0913 -1.5255 2.4347 21 7 5.5353 -1.3234 2.5762 22 6 6.2080 -1.8977 3.6217 23 1 5.6739 -2.5000 4.3416 24 6 7.5764 -1.7066 3.7554 25 7 8.2273 -0.9730 2.8776 26 14 8.4940 -2.4906 5.1810 27 1 8.3426 -3.9664 5.1155 28 1 9.9336 -2.1360 5.0980 29 1 7.9351 -1.9922 6.4634 30 6 2.0399 -0.7210 1.2499 31 1 -0.3634 0.5141 0.8898 32 1 -0.3634 0.5134 -0.8902 33 1 -0.3633 -1.0277 0.0005 34 1 1.6979 -1.7554 -1.2387 35 1 1.6567 -0.2207 -2.1399 36 1 3.9188 0.3453 -1.3631 37 1 3.9487 -1.2778 -2.0993 38 1 5.7252 -0.7605 -2.1307 39 1 6.7033 -1.5977 -4.2435 40 1 7.0841 -3.9536 -4.5851 41 1 3.5897 -1.2177 3.3522 42 1 3.8887 -2.5797 2.2461 43 1 6.0150 -0.7827 1.9293 44 1 9.1834 -0.8391 2.9712 45 1 1.6979 -1.7558 1.2379 46 1 1.6573 -0.2211 2.1397 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001263990121.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:39:46 Heat of formation + Delta-G solvation = 177.543519 kcal Electronic energy + Delta-G solvation = -31583.304802 eV Core-core repulsion = 27513.646684 eV Total energy + Delta-G solvation = -4069.658118 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 2.92 seconds Orbital eigenvalues (eV) -43.09753 -40.35857 -38.37093 -37.27090 -34.95141 -34.00072 -33.31806 -32.12600 -31.82325 -30.24755 -30.00259 -28.24468 -25.68765 -25.14603 -24.28377 -23.37400 -23.15836 -22.73645 -21.42914 -20.15434 -19.40620 -18.49890 -17.46878 -17.12721 -16.65067 -16.45466 -15.86984 -15.43979 -15.02093 -14.64681 -14.54837 -14.32970 -14.00419 -13.59781 -13.52037 -13.38146 -13.00481 -12.90387 -12.82393 -12.66165 -12.31302 -12.28972 -12.04203 -11.95059 -11.76295 -11.64622 -11.27849 -11.03988 -10.96885 -10.79499 -10.78295 -10.73832 -10.46875 -10.35119 -10.06281 -9.99149 -9.73146 -8.95329 -8.59644 -8.30366 -8.16558 -6.75748 -5.85345 -2.82923 0.08274 0.64611 1.82298 2.33739 2.81080 3.20476 3.45026 3.49204 3.52668 3.62708 3.80094 4.09718 4.49649 4.55130 4.60265 4.65967 4.72440 4.77729 4.91004 5.07922 5.16131 5.24850 5.37917 5.42352 5.46167 5.52632 5.57356 5.58246 5.63948 5.67461 5.69191 5.73034 5.81286 5.86454 5.98378 6.01440 6.05299 6.10214 6.12285 6.28635 6.44131 6.46313 6.56044 6.85830 7.21444 7.64702 7.84305 8.33601 8.60380 8.84204 9.43977 10.02304 10.36087 11.36081 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.007031 B = 0.005740 C = 0.003636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3981.526995 B = 4877.157423 C = 7699.778201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.091 4.091 3 H 0.071 0.929 4 C -0.129 4.129 5 C 0.100 3.900 6 N -0.611 5.611 7 C 0.510 3.490 8 O -0.417 6.417 9 C -0.075 4.075 10 C -0.062 4.062 11 C -0.129 4.129 12 C 0.084 3.916 13 N -0.300 5.300 14 N -0.124 5.124 15 N -0.019 5.019 16 N -0.298 5.298 17 C 0.271 3.729 18 C 0.148 3.852 19 H 0.071 0.929 20 C 0.149 3.851 21 N -0.676 5.676 22 C -0.187 4.187 23 H 0.074 0.926 24 C -0.026 4.026 25 N -0.917 5.917 26 Si 0.910 3.090 27 H -0.284 1.284 28 H -0.291 1.291 29 H -0.285 1.285 30 C -0.122 4.122 31 H 0.054 0.946 32 H 0.052 0.948 33 H 0.053 0.947 34 H 0.066 0.934 35 H 0.070 0.930 36 H 0.067 0.933 37 H 0.086 0.914 38 H 0.159 0.841 39 H 0.165 0.835 40 H 0.174 0.826 41 H 0.023 0.977 42 H 0.053 0.947 43 H 0.382 0.618 44 H 0.257 0.743 45 H 0.068 0.932 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.803 5.998 -16.716 21.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.110 4.110 3 H 0.089 0.911 4 C -0.167 4.167 5 C -0.024 4.024 6 N -0.350 5.350 7 C 0.295 3.705 8 O -0.283 6.283 9 C -0.087 4.087 10 C -0.090 4.090 11 C -0.153 4.153 12 C -0.045 4.045 13 N -0.081 5.081 14 N -0.107 5.107 15 N -0.012 5.012 16 N -0.155 5.155 17 C 0.013 3.987 18 C 0.045 3.955 19 H 0.089 0.911 20 C 0.022 3.978 21 N -0.315 5.315 22 C -0.319 4.319 23 H 0.092 0.908 24 C -0.222 4.222 25 N -0.564 5.564 26 Si 0.741 3.259 27 H -0.211 1.211 28 H -0.217 1.217 29 H -0.212 1.212 30 C -0.161 4.161 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.104 0.896 38 H 0.177 0.823 39 H 0.183 0.817 40 H 0.192 0.808 41 H 0.041 0.959 42 H 0.071 0.929 43 H 0.216 0.784 44 H 0.067 0.933 45 H 0.087 0.913 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -11.505 3.942 -15.476 19.683 hybrid contribution 1.007 0.662 -0.130 1.212 sum -10.498 4.604 -15.607 19.364 Atomic orbital electron populations 1.21817 0.95274 1.01745 1.01441 1.21107 0.95400 0.99551 0.94905 0.91059 1.22065 0.95384 1.01342 0.97930 1.22070 0.94213 0.98929 0.87153 1.47574 1.44742 1.36472 1.06191 1.17345 0.82311 0.83465 0.87424 1.91222 1.56793 1.51383 1.28923 1.20354 1.04536 0.86239 0.97586 1.21877 0.94973 1.00681 0.91440 1.20871 1.01474 0.93548 0.99385 1.21429 1.01604 0.87630 0.93823 1.48806 1.38270 1.07812 1.13164 1.82683 1.27335 0.84070 1.16567 1.77971 1.05032 1.20736 0.97507 1.75184 1.23806 0.93013 1.23544 1.23648 0.95496 0.96066 0.83531 1.21468 0.92701 0.97710 0.83655 0.91148 1.21107 0.86097 0.98203 0.92388 1.42536 1.02426 1.56983 1.29556 1.19404 0.90680 1.21165 1.00628 0.90833 1.24746 0.96513 1.01434 0.99524 1.69644 1.08390 1.42029 1.36366 0.86171 0.78749 0.79324 0.81611 1.21055 1.21669 1.21189 1.21981 0.95034 1.01407 0.97687 0.92664 0.92926 0.92780 0.91559 0.91177 0.91523 0.89600 0.82323 0.81730 0.80843 0.95919 0.92914 0.78436 0.93334 0.91341 0.90794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 48. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.19 37.16 0.34 -0.83 16 2 C -0.09 -0.85 2.68 -90.58 -0.24 -1.09 16 3 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 4 C -0.13 -1.14 5.38 -26.38 -0.14 -1.29 16 5 C 0.10 0.99 4.91 -3.49 -0.02 0.98 16 6 N -0.61 -9.01 2.97 -166.26 -0.49 -9.50 16 7 C 0.51 9.55 6.78 -12.57 -0.09 9.47 16 8 O -0.42 -10.06 10.76 5.26 0.06 -10.00 16 9 C -0.08 -1.22 5.35 -102.71 -0.55 -1.77 16 10 C -0.06 -0.68 7.48 -38.74 -0.29 -0.97 16 11 C -0.13 -1.04 9.92 -40.09 -0.40 -1.43 16 12 C 0.08 0.85 11.15 -16.89 -0.19 0.66 16 13 N -0.30 -4.68 3.94 -10.99 -0.04 -4.73 16 14 N -0.12 -2.20 13.99 60.35 0.84 -1.36 16 15 N -0.02 -0.39 13.36 60.35 0.81 0.41 16 16 N -0.30 -6.42 12.24 32.20 0.39 -6.03 16 17 C 0.27 5.01 7.92 -154.52 -1.22 3.79 16 18 C 0.15 2.27 2.92 -67.60 -0.20 2.07 16 19 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 20 C 0.15 3.04 4.87 -4.04 -0.02 3.02 16 21 N -0.68 -17.06 3.24 -59.91 -0.19 -17.25 16 22 C -0.19 -5.30 9.70 -15.06 -0.15 -5.44 16 23 H 0.07 2.05 7.83 -52.49 -0.41 1.64 16 24 C -0.03 -0.75 5.50 -17.43 -0.10 -0.84 16 25 N -0.92 -27.63 13.06 55.49 0.72 -26.90 16 26 Si 0.91 23.10 29.55 -169.99 -5.02 18.08 16 27 H -0.28 -7.31 7.11 56.52 0.40 -6.91 16 28 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 29 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 30 C -0.12 -1.46 4.64 -26.61 -0.12 -1.58 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.07 0.56 8.11 -51.93 -0.42 0.14 16 37 H 0.09 0.76 4.64 -51.93 -0.24 0.52 16 38 H 0.16 1.35 6.46 -52.49 -0.34 1.01 16 39 H 0.17 0.56 8.06 -52.49 -0.42 0.14 16 40 H 0.17 1.08 8.06 -52.49 -0.42 0.66 16 41 H 0.02 0.46 8.13 -51.93 -0.42 0.04 16 42 H 0.05 1.21 6.29 -51.93 -0.33 0.88 16 43 H 0.38 10.12 7.10 -40.82 -0.29 9.83 16 44 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 45 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 46 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 369.09 15.07 5.56 5.56 Total: -1.00 -36.42 369.09 -6.98 -43.40 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -6.24 Total: 3.59 kcal Atomic # 6 Polarization: 8.11 SS G_CDS: -3.38 Total: 4.73 kcal Atomic # 7 Polarization: -67.40 SS G_CDS: 2.04 Total: -65.36 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: 0.06 Total: -10.00 kcal Atomic # 14 Polarization: 23.10 SS G_CDS: -5.02 Total: 18.08 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -36.42 -6.98 -43.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263990121.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 220.941 kcal (2) G-P(sol) polarization free energy of solvation -36.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 184.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 177.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.92 seconds