Wall clock time and date at job start Wed Apr 1 2020 03:39:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.45986 * 2 1 4 4 C 1.53047 * 109.46004 * 240.04547 * 2 1 3 5 5 C 1.53622 * 109.24125 * 178.48987 * 4 2 1 6 6 N 1.46926 * 108.54428 * 54.85402 * 5 4 2 7 7 C 1.34777 * 120.62680 * 126.36606 * 6 5 4 8 8 O 1.21618 * 120.00134 * 185.62705 * 7 6 5 9 9 C 1.47322 * 119.99969 * 5.63101 * 7 6 5 10 10 C 1.39003 * 120.90476 * 38.64508 * 9 7 6 11 11 C 1.39721 * 119.28930 * 179.97438 * 10 9 7 12 12 C 1.35258 * 121.07981 * 0.02562 * 11 10 9 13 13 N 1.35719 * 121.57303 * 359.97438 * 12 11 10 14 14 N 1.40205 * 134.08594 * 179.97438 * 13 12 11 15 15 N 1.29020 * 106.96000 * 180.02562 * 14 13 12 16 16 N 1.28598 * 110.78732 * 359.97438 * 15 14 13 17 17 C 1.32043 * 110.21078 * 0.02562 * 16 15 14 18 18 C 1.46924 * 118.73974 * 306.09589 * 6 5 4 19 19 H 1.08999 * 109.58566 * 294.07079 * 18 6 5 20 20 C 1.52999 * 109.58322 * 173.64603 * 18 6 5 21 21 N 1.46500 * 109.47267 * 69.63296 * 20 18 6 22 22 C 1.36938 * 120.00225 * 175.29240 * 21 20 18 23 23 H 1.07997 * 119.99655 * 0.02562 * 22 21 20 24 24 C 1.38813 * 120.00042 * 179.97438 * 22 21 20 25 25 N 1.31621 * 120.00040 * 0.02562 * 24 22 21 26 26 Si 1.86794 * 120.00095 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.47233 * 59.99818 * 26 24 22 28 28 H 1.48497 * 109.47306 * 180.02562 * 26 24 22 29 29 H 1.48507 * 109.47043 * 300.00530 * 26 24 22 30 30 C 1.53036 * 109.46315 * 119.97915 * 2 1 3 31 31 H 1.08999 * 109.47412 * 300.01943 * 1 2 3 32 32 H 1.08998 * 109.47313 * 60.02897 * 1 2 3 33 33 H 1.09001 * 109.46790 * 180.02562 * 1 2 3 34 34 H 1.08997 * 109.49649 * 298.56277 * 4 2 1 35 35 H 1.09003 * 109.49572 * 58.62747 * 4 2 1 36 36 H 1.08999 * 109.73843 * 295.11773 * 5 4 2 37 37 H 1.09003 * 109.66465 * 174.55323 * 5 4 2 38 38 H 1.07997 * 120.35658 * 0.02562 * 10 9 7 39 39 H 1.07999 * 119.45880 * 179.71752 * 11 10 9 40 40 H 1.07997 * 119.21025 * 179.97438 * 12 11 10 41 41 H 1.08999 * 109.46580 * 189.62694 * 20 18 6 42 42 H 1.08991 * 109.47563 * 309.62773 * 20 18 6 43 43 H 0.97001 * 119.99497 * 355.29589 * 21 20 18 44 44 H 0.96996 * 120.00111 * 179.97438 * 25 24 22 45 45 H 1.08997 * 109.50019 * 61.43048 * 30 2 1 46 46 H 1.09001 * 109.49473 * 301.33390 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0399 -0.7205 -1.2503 5 6 3.5756 -0.6846 -1.2644 6 7 4.0679 -1.2488 -0.0003 7 6 4.9621 -2.2571 -0.0005 8 8 5.2847 -2.7841 1.0470 9 6 5.5489 -2.7210 -1.2698 10 6 5.8881 -1.8189 -2.2714 11 6 6.4430 -2.2958 -3.4616 12 6 6.6538 -3.6180 -3.6532 13 7 6.3374 -4.5331 -2.7021 14 7 6.4381 -5.9291 -2.6198 15 7 5.9783 -6.2722 -1.4642 16 7 5.5952 -5.2395 -0.8006 17 6 5.7910 -4.1430 -1.5098 18 6 3.5714 -0.6888 1.2641 19 1 3.9143 0.3407 1.3674 20 6 4.0913 -1.5255 2.4347 21 7 5.5353 -1.3234 2.5762 22 6 6.2080 -1.8977 3.6217 23 1 5.6739 -2.5000 4.3416 24 6 7.5764 -1.7066 3.7554 25 7 8.2273 -0.9730 2.8776 26 14 8.4940 -2.4906 5.1810 27 1 8.3426 -3.9664 5.1155 28 1 9.9336 -2.1360 5.0980 29 1 7.9351 -1.9922 6.4634 30 6 2.0399 -0.7210 1.2499 31 1 -0.3634 0.5141 0.8898 32 1 -0.3634 0.5134 -0.8902 33 1 -0.3633 -1.0277 0.0005 34 1 1.6979 -1.7554 -1.2387 35 1 1.6567 -0.2207 -2.1399 36 1 3.9188 0.3453 -1.3631 37 1 3.9487 -1.2778 -2.0993 38 1 5.7252 -0.7605 -2.1307 39 1 6.7033 -1.5977 -4.2435 40 1 7.0841 -3.9536 -4.5851 41 1 3.5897 -1.2177 3.3522 42 1 3.8887 -2.5797 2.2461 43 1 6.0150 -0.7827 1.9293 44 1 9.1834 -0.8391 2.9712 45 1 1.6979 -1.7558 1.2379 46 1 1.6573 -0.2211 2.1397 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001263990121.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:39:45 Heat of formation + Delta-G solvation = 148.819679 kcal Electronic energy + Delta-G solvation = -31584.550361 eV Core-core repulsion = 27513.646684 eV Total energy + Delta-G solvation = -4070.903677 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -44.46482 -41.64153 -39.57625 -38.46218 -36.52164 -35.31159 -34.57262 -33.64097 -33.09596 -31.67678 -31.30115 -29.22692 -27.16065 -26.42163 -25.47902 -24.79229 -24.36819 -24.08031 -22.76480 -21.18167 -20.51593 -19.83775 -19.06400 -18.52682 -18.02124 -17.71212 -16.91850 -16.76867 -16.53062 -15.96470 -15.66703 -15.51693 -15.27243 -15.05321 -14.71243 -14.53769 -14.52204 -14.13013 -13.91729 -13.90126 -13.66566 -13.65048 -13.22544 -13.07069 -12.82508 -12.79912 -12.70685 -12.52489 -12.48465 -12.17704 -12.15421 -12.03941 -11.85625 -11.67332 -11.38082 -11.21268 -11.01754 -10.89534 -10.05401 -9.63407 -9.43869 -8.62950 -7.86514 -5.02895 -0.92710 -0.57614 0.61733 0.98265 1.39388 1.44824 1.49349 1.66311 1.96444 2.30275 2.55001 2.59906 2.86706 3.44513 3.49189 3.63210 3.68611 3.77792 3.86740 3.95391 4.04735 4.11371 4.23791 4.32992 4.36107 4.43352 4.50062 4.57899 4.59408 4.68864 4.80552 4.82992 4.87703 4.97315 4.97752 5.03881 5.05452 5.16714 5.17898 5.27591 5.38552 5.40137 5.46303 5.52409 5.62522 5.84287 6.36489 6.57067 7.18211 7.42355 7.48581 8.22422 8.46560 9.37876 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.007031 B = 0.005740 C = 0.003636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3981.526995 B = 4877.157423 C = 7699.778201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.086 4.086 3 H 0.087 0.913 4 C -0.124 4.124 5 C 0.089 3.911 6 N -0.602 5.602 7 C 0.518 3.482 8 O -0.486 6.486 9 C -0.118 4.118 10 C -0.003 4.003 11 C -0.106 4.106 12 C 0.105 3.895 13 N -0.302 5.302 14 N -0.125 5.125 15 N -0.042 5.042 16 N -0.355 5.355 17 C 0.249 3.751 18 C 0.155 3.845 19 H 0.078 0.922 20 C 0.158 3.842 21 N -0.699 5.699 22 C -0.208 4.208 23 H 0.055 0.945 24 C -0.080 4.080 25 N -0.969 5.969 26 Si 0.958 3.042 27 H -0.297 1.297 28 H -0.291 1.291 29 H -0.274 1.274 30 C -0.115 4.115 31 H 0.055 0.945 32 H 0.072 0.928 33 H 0.044 0.956 34 H 0.048 0.952 35 H 0.108 0.892 36 H 0.102 0.898 37 H 0.101 0.899 38 H 0.200 0.800 39 H 0.241 0.759 40 H 0.228 0.772 41 H 0.013 0.987 42 H 0.015 0.985 43 H 0.370 0.630 44 H 0.245 0.755 45 H 0.049 0.951 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.894 8.830 -23.695 28.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.105 4.105 3 H 0.105 0.895 4 C -0.162 4.162 5 C -0.032 4.032 6 N -0.339 5.339 7 C 0.303 3.697 8 O -0.357 6.357 9 C -0.128 4.128 10 C -0.028 4.028 11 C -0.129 4.129 12 C -0.021 4.021 13 N -0.082 5.082 14 N -0.108 5.108 15 N -0.034 5.034 16 N -0.214 5.214 17 C -0.007 4.007 18 C 0.052 3.948 19 H 0.096 0.904 20 C 0.032 3.968 21 N -0.340 5.340 22 C -0.341 4.341 23 H 0.073 0.927 24 C -0.271 4.271 25 N -0.622 5.622 26 Si 0.789 3.211 27 H -0.225 1.225 28 H -0.217 1.217 29 H -0.201 1.201 30 C -0.154 4.154 31 H 0.074 0.926 32 H 0.091 0.909 33 H 0.063 0.937 34 H 0.067 0.933 35 H 0.126 0.874 36 H 0.120 0.880 37 H 0.119 0.881 38 H 0.217 0.783 39 H 0.257 0.743 40 H 0.245 0.755 41 H 0.031 0.969 42 H 0.033 0.967 43 H 0.202 0.798 44 H 0.054 0.946 45 H 0.068 0.932 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -12.684 6.745 -22.637 26.810 hybrid contribution 1.135 -0.353 1.039 1.578 sum -11.549 6.392 -21.598 25.312 Atomic orbital electron populations 1.21780 0.94074 1.01546 1.02535 1.21108 0.96330 0.99795 0.93223 0.89475 1.22065 0.94274 1.00756 0.99150 1.22553 0.95275 1.00613 0.84733 1.47792 1.43043 1.35037 1.08025 1.18041 0.81317 0.82624 0.87730 1.91268 1.58721 1.54296 1.31420 1.20474 1.07772 0.86249 0.98292 1.22734 0.88523 1.01735 0.89837 1.21845 0.98140 0.93560 0.99332 1.22949 0.97529 0.87775 0.93833 1.49078 1.38052 1.07624 1.13398 1.82506 1.27091 0.85454 1.15757 1.77913 1.05847 1.21366 0.98311 1.75060 1.26175 0.94525 1.25688 1.23807 0.96187 0.96305 0.84391 1.21347 0.94677 0.96560 0.82250 0.90385 1.20964 0.84510 0.96958 0.94394 1.42222 1.03404 1.58819 1.29535 1.19388 0.91162 1.21818 1.01769 0.92679 1.25240 0.97155 1.02961 1.01737 1.69757 1.07412 1.46164 1.38833 0.85415 0.77738 0.77620 0.80321 1.22505 1.21723 1.20058 1.21942 0.92223 1.01048 1.00193 0.92570 0.90886 0.93660 0.93347 0.87379 0.87994 0.88067 0.78335 0.74258 0.75517 0.96887 0.96701 0.79798 0.94644 0.93187 0.90168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 9.19 71.98 0.66 -1.16 16 2 C -0.09 -1.31 2.68 -10.77 -0.03 -1.34 16 3 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 4 C -0.12 -1.63 5.38 30.82 0.17 -1.46 16 5 C 0.09 1.32 4.91 86.51 0.42 1.74 16 6 N -0.60 -17.04 2.97 -798.16 -2.37 -19.40 16 7 C 0.52 19.70 6.78 86.63 0.59 20.29 16 8 O -0.49 -25.43 10.76 -4.09 -0.04 -25.47 16 9 C -0.12 -3.55 5.35 -18.63 -0.10 -3.65 16 10 C 0.00 -0.05 7.48 22.81 0.17 0.13 16 11 C -0.11 -0.67 9.92 21.94 0.22 -0.45 16 12 C 0.10 1.31 11.15 83.40 0.93 2.24 16 13 N -0.30 -8.36 3.94 -188.68 -0.74 -9.11 16 14 N -0.12 -4.28 13.99 37.02 0.52 -3.76 16 15 N -0.04 -1.74 13.36 37.02 0.49 -1.25 16 16 N -0.36 -16.04 12.24 -52.05 -0.64 -16.67 16 17 C 0.25 9.00 7.92 135.76 1.07 10.07 16 18 C 0.15 4.85 2.92 44.97 0.13 4.99 16 19 H 0.08 2.38 8.14 -2.39 -0.02 2.37 16 20 C 0.16 7.13 4.87 86.38 0.42 7.55 16 21 N -0.70 -38.61 3.24 -343.47 -1.11 -39.72 16 22 C -0.21 -13.04 9.70 84.03 0.82 -12.22 16 23 H 0.06 3.46 7.83 -2.91 -0.02 3.44 16 24 C -0.08 -5.04 5.50 84.86 0.47 -4.57 16 25 N -0.97 -62.86 13.06 21.65 0.28 -62.57 16 26 Si 0.96 51.58 29.55 68.60 2.03 53.61 16 27 H -0.30 -16.29 7.11 99.48 0.71 -15.58 16 28 H -0.29 -15.39 7.11 99.48 0.71 -14.69 16 29 H -0.27 -13.97 7.11 99.48 0.71 -13.26 16 30 C -0.12 -2.71 4.64 30.67 0.14 -2.57 16 31 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.10 0.95 8.11 -2.39 -0.02 0.93 16 37 H 0.10 1.11 4.64 -2.39 -0.01 1.10 16 38 H 0.20 1.58 6.46 -2.91 -0.02 1.56 16 39 H 0.24 -1.60 8.06 -2.91 -0.02 -1.62 16 40 H 0.23 0.59 8.06 -2.91 -0.02 0.57 16 41 H 0.01 0.60 8.13 -2.39 -0.02 0.58 16 42 H 0.02 0.79 6.29 -2.39 -0.02 0.77 16 43 H 0.37 21.16 7.10 -92.71 -0.66 20.50 16 44 H 0.24 15.45 8.31 -92.71 -0.77 14.68 16 45 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 46 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -100.57 369.09 4.86 -95.71 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: 0.36 Total: 9.08 kcal Atomic # 6 Polarization: 13.49 SS G_CDS: 6.08 Total: 19.57 kcal Atomic # 7 Polarization: -148.93 SS G_CDS: -3.57 Total: -152.49 kcal Atomic # 8 Polarization: -25.43 SS G_CDS: -0.04 Total: -25.47 kcal Atomic # 14 Polarization: 51.58 SS G_CDS: 2.03 Total: 53.61 kcal Total: -100.57 4.86 -95.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263990121.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 244.525 kcal (2) G-P(sol) polarization free energy of solvation -100.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 143.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.705 kcal (6) G-S(sol) free energy of system = (1) + (5) 148.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds