Wall clock time and date at job start Wed Apr 1 2020 02:28:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47096 * 2 1 4 4 C 1.52993 * 109.47691 * 120.00342 * 2 1 3 5 5 C 1.52998 * 109.47494 * 175.00241 * 4 2 1 6 6 H 1.08995 * 109.47224 * 54.99401 * 5 4 2 7 7 C 1.53001 * 109.47477 * 175.00075 * 5 4 2 8 8 N 1.46493 * 109.47086 * 174.99605 * 7 5 4 9 9 C 1.36945 * 119.99892 * 179.97438 * 8 7 5 10 10 H 1.08000 * 119.99422 * 359.72792 * 9 8 7 11 11 C 1.38811 * 120.00031 * 179.72716 * 9 8 7 12 12 N 1.31616 * 119.99707 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99814 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47389 * 59.99917 * 13 11 9 15 15 H 1.48501 * 109.47057 * 180.02562 * 13 11 9 16 16 H 1.48504 * 109.47102 * 299.99569 * 13 11 9 17 17 N 1.46499 * 109.46722 * 295.00000 * 5 4 2 18 18 C 1.34776 * 120.00310 * 85.00117 * 17 5 4 19 19 O 1.21601 * 119.99957 * 359.97438 * 18 17 5 20 20 C 1.47432 * 120.00233 * 179.97438 * 18 17 5 21 21 C 1.41285 * 126.41342 * 359.68985 * 20 18 17 22 22 N 1.30450 * 108.02271 * 179.85212 * 21 20 18 23 23 N 1.39934 * 108.89388 * 0.40746 * 22 21 20 24 24 C 1.46507 * 125.75095 * 179.73464 * 23 22 21 25 25 C 1.34252 * 108.49155 * 359.73542 * 23 22 21 26 26 C 1.50706 * 126.28716 * 179.97438 * 25 23 22 27 27 F 1.39895 * 109.47243 * 30.02399 * 26 25 23 28 28 F 1.39900 * 109.46797 * 150.02848 * 26 25 23 29 29 H 1.09001 * 109.47023 * 299.99625 * 1 2 3 30 30 H 1.08993 * 109.47671 * 59.99712 * 1 2 3 31 31 H 1.09009 * 109.47206 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47023 * 240.00375 * 2 1 3 33 33 H 1.09003 * 109.47026 * 300.00710 * 3 2 1 34 34 H 1.09001 * 109.46878 * 60.00286 * 3 2 1 35 35 H 1.08993 * 109.47743 * 180.02562 * 3 2 1 36 36 H 1.08998 * 109.47378 * 54.99860 * 4 2 1 37 37 H 1.09006 * 109.46976 * 294.99917 * 4 2 1 38 38 H 1.08998 * 109.47065 * 54.99382 * 7 5 4 39 39 H 1.09001 * 109.46892 * 294.99646 * 7 5 4 40 40 H 0.97000 * 120.00738 * 359.73142 * 8 7 5 41 41 H 0.97004 * 119.99151 * 179.97438 * 12 11 9 42 42 H 0.97008 * 119.99748 * 264.99743 * 17 5 4 43 43 H 1.08004 * 125.98799 * 359.97438 * 21 20 18 44 44 H 1.08996 * 109.46994 * 270.00233 * 24 23 22 45 45 H 1.08999 * 109.46931 * 30.00156 * 24 23 22 46 46 H 1.08994 * 109.46869 * 149.99905 * 24 23 22 47 47 H 1.09003 * 109.47016 * 270.02093 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 3.5649 -0.8310 1.1878 6 1 3.9954 0.1612 1.0525 7 6 4.0854 -1.4394 2.4916 8 7 5.5306 -1.6550 2.3871 9 6 6.2204 -2.1938 3.4403 10 1 5.6996 -2.4557 4.3495 11 6 7.5889 -2.4034 3.3392 12 7 8.2235 -2.0837 2.2314 13 14 8.5296 -3.1390 4.7756 14 1 7.9829 -4.4837 5.0888 15 1 9.9657 -3.2591 4.4173 16 1 8.3883 -2.2583 5.9630 17 7 3.9480 -1.6870 0.0623 18 6 4.0651 -1.1628 -1.1738 19 8 3.8524 0.0206 -1.3550 20 6 4.4512 -2.0242 -2.3063 21 6 4.7345 -3.4072 -2.2496 22 7 5.0325 -3.8079 -3.4547 23 7 4.9643 -2.7147 -4.3255 24 6 5.2348 -2.7487 -5.7650 25 6 4.6092 -1.6294 -3.6195 26 6 4.4189 -0.2360 -4.1611 27 9 3.9929 -0.3070 -5.4917 28 9 3.4561 0.4334 -3.3981 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.6765 1.9564 -0.8899 34 1 1.6766 1.9563 0.8900 35 1 3.1299 1.4426 -0.0005 36 1 1.6055 -1.7198 1.2950 37 1 1.7518 -0.1583 2.1369 38 1 3.5879 -2.3924 2.6718 39 1 3.8782 -0.7594 3.3179 40 1 5.9984 -1.4194 1.5707 41 1 9.1798 -2.2299 2.1610 42 1 4.1173 -2.6312 0.2068 43 1 4.7070 -4.0249 -1.3640 44 1 6.2922 -2.5511 -5.9407 45 1 4.9784 -3.7319 -6.1597 46 1 4.6350 -1.9886 -6.2654 47 1 5.3635 0.3057 -4.1104 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319636719.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:28:15 Heat of formation + Delta-G solvation = -47.341475 kcal Electronic energy + Delta-G solvation = -32130.073601 eV Core-core repulsion = 27599.974551 eV Total energy + Delta-G solvation = -4530.099050 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.176 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.19368 -47.10040 -41.54625 -39.46181 -36.50984 -34.89244 -33.81813 -33.21438 -31.52092 -31.05954 -29.21580 -27.28914 -26.78467 -26.24393 -25.49242 -23.16751 -22.51130 -21.26854 -20.39927 -19.85238 -19.53681 -18.18244 -17.75181 -17.22144 -17.02318 -16.44247 -15.82483 -15.63668 -15.36167 -15.12324 -14.63822 -14.51720 -14.03021 -13.86209 -13.80746 -13.71481 -13.43084 -13.25644 -13.00732 -12.95180 -12.79399 -12.69320 -12.51640 -12.05137 -11.94189 -11.82748 -11.63702 -11.41740 -11.02335 -10.98741 -10.91645 -10.78484 -10.44552 -10.19381 -10.16138 -9.95429 -9.76732 -9.69279 -9.32768 -8.89866 -8.84508 -8.45191 -6.94492 -5.77225 -3.06596 1.14097 2.00404 2.13708 3.29515 3.43257 3.48139 3.48853 3.58068 3.68987 3.86993 4.22842 4.51594 4.57701 4.65978 4.85345 4.90433 5.03022 5.08363 5.16193 5.25948 5.28621 5.32427 5.55159 5.57681 5.69512 5.74329 5.80124 5.96399 6.05732 6.13191 6.18923 6.19496 6.24186 6.27597 6.39001 6.43904 6.51886 6.58062 6.73034 6.79825 6.94897 7.06228 7.30169 7.68630 7.99184 8.40863 8.68868 9.52808 10.09401 10.44937 11.44900 Molecular weight = 344.18amu Principal moments of inertia in cm(-1) A = 0.009502 B = 0.003993 C = 0.003079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2945.990957 B = 7011.137446 C = 9092.423885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.092 4.092 3 C -0.135 4.135 4 C -0.122 4.122 5 C 0.140 3.860 6 H 0.092 0.908 7 C 0.144 3.856 8 N -0.730 5.730 9 C -0.242 4.242 10 H 0.070 0.930 11 C -0.011 4.011 12 N -0.931 5.931 13 Si 0.906 3.094 14 H -0.286 1.286 15 H -0.292 1.292 16 H -0.286 1.286 17 N -0.703 5.703 18 C 0.584 3.416 19 O -0.525 6.525 20 C -0.239 4.239 21 C 0.086 3.914 22 N -0.280 5.280 23 N -0.343 5.343 24 C 0.079 3.921 25 C 0.057 3.943 26 C 0.342 3.658 27 F -0.203 7.203 28 F -0.148 7.148 29 H 0.048 0.952 30 H 0.047 0.953 31 H 0.046 0.954 32 H 0.078 0.922 33 H 0.042 0.958 34 H 0.035 0.965 35 H 0.077 0.923 36 H 0.060 0.940 37 H 0.068 0.932 38 H 0.023 0.977 39 H 0.033 0.967 40 H 0.386 0.614 41 H 0.255 0.745 42 H 0.401 0.599 43 H 0.198 0.802 44 H 0.082 0.918 45 H 0.095 0.905 46 H 0.106 0.894 47 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.298 1.628 -15.566 19.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.111 4.111 3 C -0.192 4.192 4 C -0.161 4.161 5 C 0.035 3.965 6 H 0.110 0.890 7 C 0.016 3.984 8 N -0.375 5.375 9 C -0.373 4.373 10 H 0.087 0.913 11 C -0.207 4.207 12 N -0.579 5.579 13 Si 0.737 3.263 14 H -0.213 1.213 15 H -0.218 1.218 16 H -0.213 1.213 17 N -0.353 5.353 18 C 0.370 3.630 19 O -0.403 6.403 20 C -0.254 4.254 21 C -0.100 4.100 22 N -0.100 5.100 23 N -0.123 5.123 24 C -0.062 4.062 25 C -0.077 4.077 26 C 0.286 3.714 27 F -0.185 7.185 28 F -0.129 7.129 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.096 0.904 33 H 0.061 0.939 34 H 0.054 0.946 35 H 0.096 0.904 36 H 0.079 0.921 37 H 0.087 0.913 38 H 0.041 0.959 39 H 0.050 0.950 40 H 0.221 0.779 41 H 0.065 0.935 42 H 0.235 0.765 43 H 0.215 0.785 44 H 0.100 0.900 45 H 0.114 0.886 46 H 0.124 0.876 47 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -11.067 1.412 -16.417 19.849 hybrid contribution 0.624 -0.348 1.071 1.288 sum -10.443 1.064 -15.345 18.592 Atomic orbital electron populations 1.21864 0.96673 1.00769 1.00992 1.21133 0.93925 0.97324 0.98678 1.21801 1.03109 0.94899 0.99403 1.22020 0.95186 1.00497 0.98369 1.21350 0.93808 0.95592 0.85727 0.89001 1.20970 0.86953 0.97293 0.93232 1.42338 1.01498 1.76171 1.17536 1.19171 0.90464 1.33540 0.94173 0.91250 1.24723 0.96588 1.02061 0.97321 1.69659 1.08688 1.53628 1.25925 0.86291 0.79061 0.79007 0.81933 1.21286 1.21762 1.21293 1.45705 1.69612 1.13162 1.06846 1.17083 0.77005 0.86922 0.81987 1.90839 1.50408 1.15021 1.83990 1.20214 1.17115 0.95026 0.93077 1.24189 0.96040 0.93715 0.96071 1.77264 1.23912 1.08125 1.00668 1.48256 1.50610 1.04620 1.08769 1.22373 1.03423 1.06105 0.74256 1.21883 1.02077 0.90808 0.92893 1.19696 0.91979 0.87427 0.72267 1.92902 1.92191 1.96728 1.36658 1.93242 1.65511 1.80058 1.74057 0.93255 0.93350 0.93486 0.90396 0.93916 0.94605 0.90436 0.92099 0.91293 0.95916 0.94962 0.77937 0.93509 0.76472 0.78494 0.89952 0.88586 0.87611 0.85005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 9.19 37.16 0.34 -1.40 16 2 C -0.09 -1.27 2.38 -90.62 -0.22 -1.48 16 3 C -0.14 -1.94 8.03 37.16 0.30 -1.64 16 4 C -0.12 -1.66 4.36 -26.74 -0.12 -1.78 16 5 C 0.14 2.24 2.33 -67.93 -0.16 2.08 16 6 H 0.09 1.66 5.92 -51.93 -0.31 1.35 16 7 C 0.14 2.71 5.82 -4.04 -0.02 2.69 16 8 N -0.73 -17.61 5.44 -59.91 -0.33 -17.94 16 9 C -0.24 -6.56 9.99 -15.06 -0.15 -6.71 16 10 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 11 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 12 N -0.93 -27.61 13.06 55.49 0.72 -26.88 16 13 Si 0.91 22.05 29.55 -169.99 -5.02 17.02 16 14 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 15 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 16 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 17 N -0.70 -10.82 4.46 -54.88 -0.24 -11.06 16 18 C 0.58 9.20 6.32 -12.52 -0.08 9.13 16 19 O -0.52 -8.88 8.13 5.28 0.04 -8.83 16 20 C -0.24 -3.46 6.09 -105.07 -0.64 -4.10 16 21 C 0.09 1.17 11.50 -16.98 -0.20 0.98 16 22 N -0.28 -3.87 12.50 30.86 0.39 -3.49 16 23 N -0.34 -4.12 3.98 -63.34 -0.25 -4.37 16 24 C 0.08 0.60 11.16 59.85 0.67 1.27 16 25 C 0.06 0.74 6.74 -81.60 -0.55 0.19 16 26 C 0.34 3.84 5.53 36.01 0.20 4.04 16 27 F -0.20 -2.04 14.55 2.25 0.03 -2.01 16 28 F -0.15 -2.11 13.52 2.25 0.03 -2.08 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.05 0.53 8.14 -51.92 -0.42 0.11 16 32 H 0.08 1.21 5.19 -51.93 -0.27 0.94 16 33 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.08 1.27 4.75 -51.93 -0.25 1.02 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 38 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.39 9.96 7.33 -40.82 -0.30 9.66 16 41 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 42 H 0.40 5.90 7.56 -40.82 -0.31 5.59 16 43 H 0.20 2.25 7.50 -52.48 -0.39 1.86 16 44 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 46 H 0.11 0.69 5.52 -51.93 -0.29 0.40 16 47 H 0.13 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 379.07 15.07 5.71 5.71 Total: -1.00 -32.46 379.07 -6.37 -38.82 By element: Atomic # 1 Polarization: 18.97 SS G_CDS: -6.73 Total: 12.24 kcal Atomic # 6 Polarization: 3.58 SS G_CDS: -0.72 Total: 2.86 kcal Atomic # 7 Polarization: -64.03 SS G_CDS: 0.29 Total: -63.74 kcal Atomic # 8 Polarization: -8.88 SS G_CDS: 0.04 Total: -8.83 kcal Atomic # 9 Polarization: -4.15 SS G_CDS: 0.06 Total: -4.09 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.46 -6.37 -38.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319636719.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.518 kcal (2) G-P(sol) polarization free energy of solvation -32.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds