Wall clock time and date at job start Wed Apr 1 2020 02:36:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50697 * 120.00059 * 2 1 4 4 C 1.50703 * 120.00189 * 180.02562 * 2 1 3 5 5 N 1.46503 * 109.47327 * 89.59699 * 4 2 1 6 6 C 1.36739 * 127.13625 * 277.10204 * 5 4 2 7 7 C 1.50696 * 126.34681 * 359.97438 * 6 5 4 8 8 C 1.53001 * 109.47190 * 274.33248 * 7 6 5 9 9 F 1.39894 * 109.47403 * 189.43105 * 8 7 6 10 10 F 1.39899 * 109.46843 * 69.43087 * 8 7 6 11 11 N 1.30296 * 107.30102 * 179.73171 * 6 5 4 12 12 N 1.28525 * 110.05721 * 0.26268 * 11 6 5 13 13 C 1.31212 * 109.85994 * 359.97438 * 12 11 6 14 14 N 1.38584 * 126.47570 * 180.02562 * 13 12 11 15 15 C 1.46902 * 110.99682 * 80.24310 * 14 13 12 16 16 C 1.50707 * 109.47141 * 149.51841 * 15 14 13 17 17 H 1.07996 * 119.99662 * 4.02918 * 16 15 14 18 18 C 1.37879 * 119.99960 * 184.02734 * 16 15 14 19 19 N 1.31514 * 119.99860 * 169.99840 * 18 16 15 20 20 Si 1.86800 * 120.00030 * 349.99745 * 18 16 15 21 21 H 1.48499 * 109.46875 * 86.83709 * 20 18 16 22 22 H 1.48498 * 109.46949 * 206.83461 * 20 18 16 23 23 H 1.48499 * 109.47190 * 326.83526 * 20 18 16 24 24 C 1.46896 * 111.00194 * 316.29375 * 14 13 12 25 25 C 1.53001 * 109.47292 * 198.69480 * 24 14 13 26 26 O 1.42901 * 109.47293 * 59.75026 * 25 24 14 27 27 C 1.42897 * 113.99650 * 179.97438 * 26 25 24 28 28 H 1.07998 * 119.99752 * 179.97438 * 1 2 3 29 29 H 1.07994 * 119.99491 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.47593 * 266.89850 * 3 2 1 31 31 H 1.09000 * 109.47135 * 26.89858 * 3 2 1 32 32 H 1.09005 * 109.47123 * 146.89432 * 3 2 1 33 33 H 1.09006 * 109.47159 * 329.59935 * 4 2 1 34 34 H 1.08999 * 109.47311 * 209.60111 * 4 2 1 35 35 H 1.09003 * 109.46941 * 154.33883 * 7 6 5 36 36 H 1.08993 * 109.47280 * 34.33546 * 7 6 5 37 37 H 1.09000 * 109.47373 * 309.43406 * 8 7 6 38 38 H 1.09005 * 109.47127 * 269.51532 * 15 14 13 39 39 H 1.09000 * 109.47553 * 29.51657 * 15 14 13 40 40 H 0.96996 * 119.99832 * 179.97438 * 19 18 16 41 41 H 1.09007 * 109.46562 * 318.68781 * 24 14 13 42 42 H 1.08995 * 109.47391 * 78.69021 * 24 14 13 43 43 H 1.08999 * 109.46936 * 179.75648 * 25 24 14 44 44 H 1.09001 * 109.46526 * 299.74605 * 25 24 14 45 45 H 1.09004 * 109.46902 * 60.00573 * 27 26 25 46 46 H 1.08998 * 109.46849 * 179.97438 * 27 26 25 47 47 H 1.08997 * 109.47419 * 300.00111 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0636 -1.3051 -0.0006 5 7 2.2994 -1.7323 -1.3820 6 6 1.4317 -2.4040 -2.1979 7 6 0.0368 -2.8508 -1.8434 8 6 0.0985 -4.2121 -1.1479 9 9 -1.1957 -4.7255 -1.0119 10 9 0.6765 -4.0634 0.1175 11 7 2.0326 -2.5815 -3.3403 12 7 3.2138 -2.0765 -3.3001 13 6 3.4314 -1.5448 -2.1204 14 7 4.5900 -0.9080 -1.7048 15 6 4.6357 0.4755 -2.1966 16 6 5.3964 1.3319 -1.2173 17 1 5.8606 0.8810 -0.3526 18 6 5.4998 2.6910 -1.4252 19 7 5.9884 3.4653 -0.4811 20 14 4.9458 3.4324 -3.0478 21 1 3.4936 3.7359 -2.9831 22 1 5.7022 4.6844 -3.3038 23 1 5.2012 2.4663 -4.1463 24 6 5.7820 -1.6561 -2.1261 25 6 6.9835 -1.2155 -1.2874 26 8 6.7192 -1.4696 0.0938 27 6 7.7847 -1.0927 0.9682 28 1 -0.5399 -0.9353 -0.0004 29 1 -0.5399 0.9353 0.0004 30 1 2.2934 1.5920 -1.0261 31 1 1.4515 2.0780 0.4649 32 1 2.9907 1.1893 0.5613 33 1 1.4776 -2.0632 0.5191 34 1 3.0191 -1.1732 0.5071 35 1 -0.5600 -2.9337 -2.7518 36 1 -0.4194 -2.1212 -1.1744 37 1 0.7007 -4.8978 -1.7440 38 1 5.1350 0.5004 -3.1653 39 1 3.6203 0.8577 -2.3012 40 1 6.0614 4.4214 -0.6275 41 1 5.6107 -2.7230 -1.9829 42 1 5.9818 -1.4582 -3.1791 43 1 7.8670 -1.7737 -1.5971 44 1 7.1574 -0.1495 -1.4340 45 1 7.9756 -0.0241 0.8686 46 1 7.5063 -1.3172 1.9978 47 1 8.6845 -1.6487 0.7053 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001343568513.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:36:43 Heat of formation + Delta-G solvation = -34.264233 kcal Electronic energy + Delta-G solvation = -32680.000309 eV Core-core repulsion = 28150.468332 eV Total energy + Delta-G solvation = -4529.531978 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.176 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.21736 -47.21943 -42.74036 -37.92542 -36.73052 -36.24593 -33.48671 -33.03127 -32.49737 -29.63155 -28.85670 -27.13657 -27.03415 -26.57894 -25.57834 -23.97313 -22.32763 -22.10240 -20.93101 -19.94714 -18.61217 -17.83575 -17.57564 -17.42811 -16.93214 -16.28915 -16.00614 -15.84049 -15.56758 -14.96878 -14.62176 -14.39172 -14.34808 -14.20492 -14.12339 -13.68829 -13.52614 -13.36287 -13.24170 -13.15367 -12.70573 -12.52468 -12.40913 -11.85607 -11.82545 -11.65741 -11.48654 -11.33520 -11.31957 -11.26028 -11.03497 -10.84827 -10.56181 -10.45711 -10.35572 -10.10998 -9.78956 -9.48395 -9.11655 -8.91581 -8.82404 -8.64113 -7.91808 -6.19944 -4.15172 1.80688 1.99196 2.78745 2.98832 3.17392 3.26999 3.32222 3.60696 3.95512 4.04732 4.22101 4.26911 4.31615 4.44768 4.73134 4.79070 4.82414 4.93602 5.09230 5.21215 5.42825 5.47849 5.62680 5.65338 5.68631 5.74230 5.82419 5.86373 5.98135 6.02928 6.06776 6.17060 6.22363 6.22541 6.26287 6.45881 6.49992 6.60594 6.65888 6.74081 6.90339 7.02508 7.43469 7.47054 7.82679 7.87244 8.46414 8.95775 8.96533 9.42072 10.91287 Molecular weight = 344.18amu Principal moments of inertia in cm(-1) A = 0.011376 B = 0.004379 C = 0.003908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2460.623563 B = 6393.189294 C = 7163.686766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.126 4.126 3 C -0.116 4.116 4 C 0.137 3.863 5 N -0.448 5.448 6 C 0.147 3.853 7 C -0.081 4.081 8 C 0.268 3.732 9 F -0.201 7.201 10 F -0.202 7.202 11 N -0.276 5.276 12 N -0.329 5.329 13 C 0.387 3.613 14 N -0.443 5.443 15 C 0.173 3.827 16 C -0.507 4.507 17 H 0.097 0.903 18 C 0.080 3.920 19 N -0.888 5.888 20 Si 0.854 3.146 21 H -0.277 1.277 22 H -0.284 1.284 23 H -0.267 1.267 24 C 0.085 3.915 25 C 0.061 3.939 26 O -0.373 6.373 27 C 0.036 3.964 28 H 0.095 0.905 29 H 0.104 0.896 30 H 0.072 0.928 31 H 0.056 0.944 32 H 0.087 0.913 33 H 0.099 0.901 34 H 0.120 0.880 35 H 0.129 0.871 36 H 0.108 0.892 37 H 0.118 0.882 38 H 0.008 0.992 39 H 0.021 0.979 40 H 0.265 0.735 41 H 0.066 0.934 42 H 0.061 0.939 43 H 0.037 0.963 44 H 0.089 0.911 45 H 0.047 0.953 46 H 0.075 0.925 47 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.099 -10.939 1.791 13.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.127 4.127 3 C -0.172 4.172 4 C 0.015 3.985 5 N -0.140 5.140 6 C -0.121 4.121 7 C -0.121 4.121 8 C 0.213 3.787 9 F -0.182 7.182 10 F -0.183 7.183 11 N -0.118 5.118 12 N -0.174 5.174 13 C 0.031 3.969 14 N -0.169 5.169 15 C 0.048 3.952 16 C -0.545 4.545 17 H 0.115 0.885 18 C -0.123 4.123 19 N -0.526 5.526 20 Si 0.681 3.319 21 H -0.203 1.203 22 H -0.210 1.210 23 H -0.192 1.192 24 C -0.042 4.042 25 C -0.016 4.016 26 O -0.292 6.292 27 C -0.061 4.061 28 H 0.113 0.887 29 H 0.123 0.877 30 H 0.090 0.910 31 H 0.075 0.925 32 H 0.106 0.894 33 H 0.117 0.883 34 H 0.138 0.862 35 H 0.147 0.853 36 H 0.127 0.873 37 H 0.135 0.865 38 H 0.026 0.974 39 H 0.039 0.961 40 H 0.075 0.925 41 H 0.085 0.915 42 H 0.079 0.921 43 H 0.055 0.945 44 H 0.107 0.893 45 H 0.066 0.934 46 H 0.093 0.907 47 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -7.962 -11.222 1.052 13.800 hybrid contribution -0.311 1.187 -0.284 1.260 sum -8.273 -10.035 0.768 13.028 Atomic orbital electron populations 1.23821 0.95131 1.01783 1.02124 1.22120 0.95347 0.96246 0.99018 1.20921 1.00658 0.92128 1.03533 1.21090 1.03884 0.94362 0.79132 1.46284 1.12498 1.41773 1.13444 1.23730 0.95235 1.03218 0.89869 1.21063 0.90667 0.95931 1.04435 1.21897 0.78559 0.96606 0.81665 1.92998 1.40560 1.88336 1.96348 1.92971 1.84443 1.96627 1.44289 1.73899 1.01571 1.18710 1.17613 1.74707 1.09678 1.17105 1.15928 1.22839 0.88830 0.98755 0.86493 1.58775 0.96055 1.03655 1.58378 1.20416 0.97482 0.81736 0.95534 1.21004 1.33183 0.90817 1.09520 0.88485 1.24747 0.95078 0.96806 0.95655 1.69885 1.45980 1.04866 1.31837 0.87171 0.79221 0.79455 0.86042 1.20256 1.20955 1.19151 1.22005 0.88346 0.96833 0.97021 1.22722 0.94640 1.02587 0.81609 1.87894 1.40563 1.84415 1.16313 1.22609 0.89822 0.99605 0.94094 0.88734 0.87738 0.90965 0.92484 0.89374 0.88270 0.86157 0.85296 0.87344 0.86490 0.97439 0.96088 0.92541 0.91503 0.92082 0.94452 0.89313 0.93419 0.90682 0.95534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.30 13.34 29.01 0.39 -1.91 16 2 C -0.13 -1.84 5.64 -101.07 -0.57 -2.41 16 3 C -0.12 -1.98 10.04 36.00 0.36 -1.62 16 4 C 0.14 2.03 6.07 -5.19 -0.03 2.00 16 5 N -0.45 -7.45 2.79 -115.36 -0.32 -7.77 16 6 C 0.15 2.23 7.23 -154.02 -1.11 1.12 16 7 C -0.08 -0.85 5.73 -27.88 -0.16 -1.01 16 8 C 0.27 2.66 5.26 37.16 0.20 2.85 16 9 F -0.20 -2.04 17.34 2.25 0.04 -2.00 16 10 F -0.20 -2.37 15.31 2.25 0.03 -2.33 16 11 N -0.28 -5.00 12.18 32.99 0.40 -4.59 16 12 N -0.33 -6.62 11.90 30.31 0.36 -6.26 16 13 C 0.39 7.49 6.30 -318.87 -2.01 5.48 16 14 N -0.44 -8.88 4.19 -175.87 -0.74 -9.62 16 15 C 0.17 3.88 3.84 -4.97 -0.02 3.86 16 16 C -0.51 -12.47 7.92 -34.44 -0.27 -12.75 16 17 H 0.10 2.59 6.48 -52.49 -0.34 2.24 16 18 C 0.08 2.07 5.47 -17.82 -0.10 1.98 16 19 N -0.89 -24.44 13.96 55.43 0.77 -23.67 16 20 Si 0.85 20.09 27.46 -169.99 -4.67 15.43 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.27 -6.25 6.70 56.52 0.38 -5.87 16 24 C 0.09 1.56 5.08 -3.83 -0.02 1.54 16 25 C 0.06 1.09 5.37 37.16 0.20 1.29 16 26 O -0.37 -6.94 10.08 -35.23 -0.36 -7.30 16 27 C 0.04 0.56 11.01 101.05 1.11 1.67 16 28 H 0.09 0.96 5.69 -52.49 -0.30 0.67 16 29 H 0.10 1.17 8.01 -52.49 -0.42 0.75 16 30 H 0.07 1.42 6.56 -51.93 -0.34 1.08 16 31 H 0.06 0.87 8.01 -51.93 -0.42 0.45 16 32 H 0.09 1.68 8.07 -51.93 -0.42 1.26 16 33 H 0.10 1.26 6.00 -51.93 -0.31 0.95 16 34 H 0.12 1.97 7.99 -51.93 -0.41 1.55 16 35 H 0.13 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.11 1.05 4.96 -51.93 -0.26 0.80 16 37 H 0.12 1.03 8.11 -51.93 -0.42 0.61 16 38 H 0.01 0.18 6.62 -51.93 -0.34 -0.16 16 39 H 0.02 0.50 5.72 -51.93 -0.30 0.20 16 40 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 41 H 0.07 1.18 7.93 -51.93 -0.41 0.77 16 42 H 0.06 1.10 7.66 -51.93 -0.40 0.71 16 43 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.09 1.80 5.75 -51.93 -0.30 1.50 16 45 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 47 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 LS Contribution 387.02 15.07 5.83 5.83 Total: -1.00 -29.30 387.02 -7.34 -36.64 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -6.66 Total: 3.54 kcal Atomic # 6 Polarization: 4.14 SS G_CDS: -2.04 Total: 2.10 kcal Atomic # 7 Polarization: -52.39 SS G_CDS: 0.48 Total: -51.91 kcal Atomic # 8 Polarization: -6.94 SS G_CDS: -0.36 Total: -7.30 kcal Atomic # 9 Polarization: -4.41 SS G_CDS: 0.07 Total: -4.33 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -4.67 Total: 15.43 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -29.30 -7.34 -36.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343568513.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.379 kcal (2) G-P(sol) polarization free energy of solvation -29.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds