Wall clock time and date at job start Wed Apr 1 2020 02:32:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47238 * 2 1 4 4 C 1.53001 * 109.46953 * 119.99653 * 2 1 3 5 5 H 1.09000 * 109.47223 * 300.00426 * 4 2 1 6 6 C 1.53002 * 109.47252 * 180.02562 * 4 2 1 7 7 C 1.53000 * 109.47069 * 175.00399 * 6 4 2 8 8 N 1.46506 * 109.46787 * 180.02562 * 7 6 4 9 9 C 1.46493 * 120.00293 * 89.99848 * 8 7 6 10 10 C 1.34776 * 119.99601 * 269.99630 * 8 7 6 11 11 O 1.21611 * 119.99927 * 6.44293 * 10 8 7 12 12 C 1.47430 * 119.99868 * 186.44658 * 10 8 7 13 13 C 1.41287 * 126.41374 * 8.19458 * 12 10 8 14 14 N 1.30450 * 108.02060 * 179.97438 * 13 12 10 15 15 N 1.39938 * 108.89935 * 0.02562 * 14 13 12 16 16 C 1.46494 * 125.75355 * 180.02562 * 15 14 13 17 17 F 1.39897 * 109.47210 * 29.97311 * 16 15 14 18 18 F 1.39908 * 109.46993 * 149.97062 * 16 15 14 19 19 C 1.34265 * 108.48761 * 359.74546 * 15 14 13 20 20 N 1.46509 * 109.46938 * 60.00257 * 4 2 1 21 21 C 1.36937 * 119.99964 * 274.99720 * 20 4 2 22 22 H 1.08004 * 119.99485 * 0.02562 * 21 20 4 23 23 C 1.38806 * 120.00226 * 179.97438 * 21 20 4 24 24 N 1.31628 * 119.99505 * 359.73076 * 23 21 20 25 25 Si 1.86798 * 120.00363 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.46875 * 269.72846 * 25 23 21 27 27 H 1.48498 * 109.46759 * 29.72443 * 25 23 21 28 28 H 1.48499 * 109.47068 * 149.72642 * 25 23 21 29 29 H 1.09000 * 109.47504 * 300.00093 * 1 2 3 30 30 H 1.09009 * 109.46865 * 60.00145 * 1 2 3 31 31 H 1.08998 * 109.47293 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47504 * 239.99906 * 2 1 3 33 33 H 1.08996 * 109.47205 * 180.02562 * 3 2 1 34 34 H 1.08997 * 109.46970 * 300.00108 * 3 2 1 35 35 H 1.09000 * 109.46950 * 59.99567 * 3 2 1 36 36 H 1.09001 * 109.47258 * 295.00229 * 6 4 2 37 37 H 1.08998 * 109.47321 * 54.99947 * 6 4 2 38 38 H 1.08996 * 109.46878 * 299.99539 * 7 6 4 39 39 H 1.08992 * 109.47377 * 60.00049 * 7 6 4 40 40 H 1.08996 * 109.47086 * 95.86275 * 9 8 7 41 41 H 1.09003 * 109.47266 * 215.86399 * 9 8 7 42 42 H 1.09007 * 109.47268 * 335.85955 * 9 8 7 43 43 H 1.07991 * 125.99075 * 359.97438 * 13 12 10 44 44 H 1.08997 * 109.47028 * 269.97162 * 16 15 14 45 45 H 1.07996 * 126.28719 * 180.24833 * 19 15 14 46 46 H 0.96996 * 119.99982 * 95.00139 * 20 4 2 47 47 H 0.96993 * 119.99975 * 0.27094 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.6765 -0.2074 2.1393 6 6 3.5699 -0.7207 1.2497 7 6 4.0798 -1.3303 2.5571 8 7 5.5449 -1.3292 2.5577 9 6 6.2763 -0.1791 3.0944 10 6 6.2196 -2.3865 2.0644 11 8 5.6181 -3.2883 1.5131 12 6 7.6869 -2.4497 2.1931 13 6 8.5019 -1.5706 2.9408 14 7 9.7410 -1.9553 2.8052 15 7 9.7776 -3.0820 1.9760 16 6 10.9829 -3.8144 1.5798 17 9 11.9428 -3.7153 2.5926 18 9 10.6631 -5.1602 1.3705 19 6 8.5212 -3.3822 1.6099 20 7 1.5516 -2.1025 1.2493 21 6 0.3100 -2.3897 1.7505 22 1 -0.3093 -1.5979 2.1454 23 6 -0.1529 -3.6983 1.7500 24 7 0.5994 -4.6623 1.2630 25 14 -1.8469 -4.0901 2.4330 26 1 -1.7374 -4.3980 3.8816 27 1 -2.7404 -2.9196 2.2419 28 1 -2.4093 -5.2642 1.7185 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6766 1.9563 0.8899 36 1 3.9337 -1.3099 0.4079 37 1 3.9330 0.3032 1.1603 38 1 3.7161 -0.7411 3.3988 39 1 3.7168 -2.3541 2.6464 40 1 6.5486 -0.3736 4.1317 41 1 7.1794 -0.0160 2.5061 42 1 5.6452 0.7083 3.0447 43 1 8.1592 -0.7278 3.5226 44 1 11.3809 -3.3880 0.6590 45 1 8.2191 -4.2013 0.9742 46 1 2.1077 -2.8135 0.8944 47 1 1.4788 -4.4588 0.9080 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485440124.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:32:52 Heat of formation + Delta-G solvation = -50.130894 kcal Electronic energy + Delta-G solvation = -30572.691270 eV Core-core repulsion = 26042.471262 eV Total energy + Delta-G solvation = -4530.220008 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.176 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -50.42408 -48.55207 -42.62814 -40.53510 -38.92554 -36.76458 -35.21131 -34.22520 -32.89368 -31.69176 -30.97709 -28.46241 -27.62445 -27.40574 -26.44879 -24.98466 -23.52493 -22.68581 -22.25362 -20.79108 -20.62133 -19.49983 -19.29476 -19.16189 -18.55945 -17.31774 -17.26414 -16.78334 -16.45185 -16.26368 -16.10660 -15.61322 -15.45969 -15.34370 -15.20384 -15.07849 -14.88523 -14.73160 -14.34824 -14.31231 -14.04851 -13.90878 -13.60376 -13.34099 -13.03776 -12.88055 -12.78254 -12.64096 -12.60242 -12.49608 -12.39538 -11.90959 -11.80779 -11.73871 -11.48847 -11.41141 -11.10183 -11.02333 -10.92468 -10.76258 -10.14176 -9.60334 -8.95304 -8.24275 -5.16479 0.14799 0.63528 0.98059 1.58088 1.69463 1.82226 2.00381 2.30367 2.48675 2.77733 2.80368 3.45064 3.51157 3.51679 3.65616 3.77122 3.81963 3.94579 4.13597 4.15565 4.22004 4.28589 4.41186 4.41440 4.48215 4.62455 4.68673 4.72037 4.77239 4.89633 4.92342 5.01005 5.12217 5.13412 5.17450 5.23876 5.25397 5.34184 5.40335 5.59339 5.64249 5.71356 5.78313 6.18406 6.43309 6.59682 7.19589 7.22379 8.12421 8.27984 9.26730 Molecular weight = 344.18amu Principal moments of inertia in cm(-1) A = 0.013872 B = 0.002490 C = 0.002241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2017.959013 B =11240.049741 C =12494.027391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.109 4.109 3 C -0.135 4.135 4 C 0.186 3.814 5 H 0.049 0.951 6 C -0.120 4.120 7 C 0.131 3.869 8 N -0.607 5.607 9 C 0.054 3.946 10 C 0.579 3.421 11 O -0.591 6.591 12 C -0.291 4.291 13 C 0.091 3.909 14 N -0.294 5.294 15 N -0.431 5.431 16 C 0.505 3.495 17 F -0.182 7.182 18 F -0.185 7.185 19 C 0.144 3.856 20 N -0.744 5.744 21 C -0.297 4.297 22 H 0.071 0.929 23 C -0.117 4.117 24 N -0.985 5.985 25 Si 1.122 2.878 26 H -0.289 1.289 27 H -0.270 1.270 28 H -0.301 1.301 29 H 0.046 0.954 30 H 0.048 0.952 31 H 0.042 0.958 32 H 0.037 0.963 33 H 0.066 0.934 34 H 0.056 0.944 35 H 0.061 0.939 36 H 0.034 0.966 37 H 0.100 0.900 38 H 0.095 0.905 39 H 0.040 0.960 40 H 0.083 0.917 41 H 0.094 0.906 42 H 0.097 0.903 43 H 0.244 0.756 44 H 0.212 0.788 45 H 0.201 0.799 46 H 0.353 0.647 47 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.609 13.882 1.589 26.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.130 4.130 3 C -0.192 4.192 4 C 0.077 3.923 5 H 0.067 0.933 6 C -0.159 4.159 7 C 0.008 3.992 8 N -0.338 5.338 9 C -0.087 4.087 10 C 0.369 3.631 11 O -0.472 6.472 12 C -0.306 4.306 13 C -0.097 4.097 14 N -0.112 5.112 15 N -0.219 5.219 16 C 0.374 3.626 17 F -0.163 7.163 18 F -0.167 7.167 19 C -0.005 4.005 20 N -0.385 5.385 21 C -0.428 4.428 22 H 0.089 0.911 23 C -0.307 4.307 24 N -0.635 5.635 25 Si 0.949 3.051 26 H -0.216 1.216 27 H -0.195 1.195 28 H -0.228 1.228 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.055 0.945 33 H 0.084 0.916 34 H 0.075 0.925 35 H 0.080 0.920 36 H 0.053 0.947 37 H 0.118 0.882 38 H 0.114 0.886 39 H 0.059 0.941 40 H 0.101 0.899 41 H 0.113 0.887 42 H 0.116 0.884 43 H 0.259 0.741 44 H 0.228 0.772 45 H 0.218 0.782 46 H 0.184 0.816 47 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 22.472 12.526 2.004 25.805 hybrid contribution 0.157 -0.153 -0.720 0.753 sum 22.629 12.373 1.284 25.822 Atomic orbital electron populations 1.21731 0.96086 1.01314 1.00051 1.21664 0.95924 0.96853 0.98585 1.21811 1.01206 0.94190 1.02012 1.20405 0.91635 0.84566 0.95692 0.93285 1.22087 0.95300 1.01604 0.96957 1.21292 0.78275 1.01243 0.98386 1.47710 1.06512 1.18414 1.61123 1.22675 0.98431 0.87833 0.99740 1.17727 0.86262 0.81563 0.77597 1.90851 1.70809 1.40248 1.45338 1.20284 0.93353 1.04104 1.12842 1.25642 0.88287 0.99288 0.96527 1.77298 1.21917 1.00195 1.11787 1.50082 1.06865 1.24648 1.40346 1.22244 0.74381 0.75441 0.90560 1.93113 1.62743 1.95707 1.64785 1.93152 1.92728 1.35831 1.94955 1.23153 0.83005 0.97981 0.96325 1.42737 1.17223 1.04182 1.74317 1.20278 0.94164 0.94730 1.33663 0.91093 1.26974 1.08619 0.92226 1.02861 1.70927 1.11520 1.34381 1.46639 0.82678 0.71631 0.75399 0.75389 1.21617 1.19529 1.22807 0.93477 0.93251 0.93936 0.94469 0.91559 0.92523 0.91990 0.94746 0.88177 0.88635 0.94118 0.89915 0.88729 0.88395 0.74058 0.77182 0.78175 0.81561 0.94961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.02 8.26 71.98 0.59 -4.43 16 2 C -0.11 -3.79 2.69 -10.79 -0.03 -3.82 16 3 C -0.13 -3.32 8.85 71.98 0.64 -2.68 16 4 C 0.19 7.11 2.02 44.99 0.09 7.20 16 5 H 0.05 1.87 8.08 -2.39 -0.02 1.85 16 6 C -0.12 -3.88 4.86 30.59 0.15 -3.73 16 7 C 0.13 4.21 5.22 86.38 0.45 4.67 16 8 N -0.61 -15.68 2.87 -850.67 -2.44 -18.12 16 9 C 0.05 0.69 8.64 127.77 1.10 1.80 16 10 C 0.58 18.30 7.65 86.66 0.66 18.96 16 11 O -0.59 -25.61 16.56 -4.07 -0.07 -25.68 16 12 C -0.29 -6.89 5.92 -20.15 -0.12 -7.01 16 13 C 0.09 1.57 9.86 85.65 0.84 2.41 16 14 N -0.29 -5.65 12.32 -56.28 -0.69 -6.34 16 15 N -0.43 -7.62 3.94 -363.03 -1.43 -9.05 16 16 C 0.51 5.67 6.62 127.77 0.85 6.52 16 17 F -0.18 -2.81 17.35 44.97 0.78 -2.03 16 18 F -0.19 -2.63 16.99 44.97 0.76 -1.87 16 19 C 0.14 3.04 10.85 84.27 0.91 3.95 16 20 N -0.74 -37.72 4.45 -322.92 -1.44 -39.15 16 21 C -0.30 -16.46 7.57 84.03 0.64 -15.82 16 22 H 0.07 3.79 7.39 -2.91 -0.02 3.77 16 23 C -0.12 -6.96 5.50 84.86 0.47 -6.49 16 24 N -0.98 -65.21 13.70 21.65 0.30 -64.91 16 25 Si 1.12 54.04 29.92 68.60 2.05 56.09 16 26 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 27 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 28 H -0.30 -14.95 7.11 99.48 0.71 -14.25 16 29 H 0.05 1.65 8.14 -2.39 -0.02 1.64 16 30 H 0.05 1.60 8.14 -2.38 -0.02 1.58 16 31 H 0.04 1.95 6.01 -2.39 -0.01 1.94 16 32 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.07 1.42 6.32 -2.39 -0.02 1.40 16 34 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.06 1.39 8.14 -2.39 -0.02 1.38 16 36 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.10 2.43 6.17 -2.39 -0.01 2.41 16 38 H 0.10 2.60 8.07 -2.39 -0.02 2.58 16 39 H 0.04 1.78 7.13 -2.39 -0.02 1.77 16 40 H 0.08 0.73 7.26 -2.39 -0.02 0.71 16 41 H 0.09 0.90 5.44 -2.39 -0.01 0.89 16 42 H 0.10 0.91 8.03 -2.38 -0.02 0.90 16 43 H 0.24 2.26 4.53 -2.92 -0.01 2.24 16 44 H 0.21 0.18 8.14 -2.39 -0.02 0.16 16 45 H 0.20 3.91 8.06 -2.91 -0.02 3.88 16 46 H 0.35 20.13 6.63 -92.71 -0.61 19.51 16 47 H 0.24 16.26 6.77 -92.71 -0.63 15.63 16 Total: -1.00 -84.82 386.83 5.60 -79.22 By element: Atomic # 1 Polarization: 29.78 SS G_CDS: 0.53 Total: 30.32 kcal Atomic # 6 Polarization: -5.72 SS G_CDS: 7.25 Total: 1.53 kcal Atomic # 7 Polarization: -131.87 SS G_CDS: -5.71 Total: -137.58 kcal Atomic # 8 Polarization: -25.61 SS G_CDS: -0.07 Total: -25.68 kcal Atomic # 9 Polarization: -5.44 SS G_CDS: 1.54 Total: -3.89 kcal Atomic # 14 Polarization: 54.04 SS G_CDS: 2.05 Total: 56.09 kcal Total: -84.82 5.60 -79.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485440124.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.086 kcal (2) G-P(sol) polarization free energy of solvation -84.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds