Wall clock time and date at job start Wed Apr 1 2020 03:34:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.52252 * 2 1 4 4 C 1.53042 * 109.49958 * 120.08017 * 2 1 3 5 5 C 1.53041 * 109.53681 * 181.31520 * 4 2 1 6 6 C 1.53623 * 109.24311 * 298.50937 * 5 4 2 7 7 N 1.46931 * 108.54100 * 54.86145 * 6 5 4 8 8 C 1.34776 * 120.63435 * 126.36680 * 7 6 5 9 9 O 1.21622 * 120.00222 * 185.63464 * 8 7 6 10 10 C 1.47313 * 119.99655 * 5.63917 * 8 7 6 11 11 C 1.39007 * 120.90902 * 38.62608 * 10 8 7 12 12 C 1.39717 * 119.29167 * 180.02562 * 11 10 8 13 13 C 1.35251 * 121.08255 * 0.02562 * 12 11 10 14 14 N 1.35718 * 121.57433 * 359.97438 * 13 12 11 15 15 N 1.40211 * 134.09411 * 179.97438 * 14 13 12 16 16 N 1.29008 * 106.96164 * 180.02562 * 15 14 13 17 17 N 1.28595 * 110.79288 * 0.02562 * 16 15 14 18 18 C 1.32044 * 110.20867 * 0.02562 * 17 16 15 19 19 C 1.46927 * 118.73702 * 306.08789 * 7 6 5 20 20 H 1.09000 * 109.59281 * 293.93813 * 19 7 6 21 21 C 1.52995 * 109.58751 * 173.64896 * 19 7 6 22 22 N 1.46498 * 109.47241 * 69.56891 * 21 19 7 23 23 C 1.36937 * 120.00415 * 175.34478 * 22 21 19 24 24 H 1.07997 * 119.99896 * 0.02562 * 23 22 21 25 25 C 1.38814 * 120.00027 * 179.97438 * 23 22 21 26 26 N 1.31615 * 119.99507 * 180.02562 * 25 23 22 27 27 Si 1.86801 * 120.00046 * 0.02562 * 25 23 22 28 28 H 1.48493 * 109.47024 * 89.99818 * 27 25 23 29 29 H 1.48501 * 109.46785 * 209.99715 * 27 25 23 30 30 H 1.48498 * 109.47046 * 329.99866 * 27 25 23 31 31 H 1.08997 * 109.47202 * 180.08303 * 1 2 3 32 32 H 1.09002 * 109.46836 * 300.08036 * 1 2 3 33 33 H 1.09001 * 109.46985 * 60.08173 * 1 2 3 34 34 H 1.08999 * 109.46093 * 301.33702 * 4 2 1 35 35 H 1.09003 * 109.45302 * 61.29563 * 4 2 1 36 36 H 1.08990 * 109.49691 * 58.59122 * 5 4 2 37 37 H 1.09002 * 109.49581 * 178.65367 * 5 4 2 38 38 H 1.08998 * 109.74303 * 295.12620 * 6 5 4 39 39 H 1.08999 * 109.66347 * 174.54739 * 6 5 4 40 40 H 1.08001 * 120.35066 * 0.04311 * 11 10 8 41 41 H 1.08002 * 119.45637 * 180.27705 * 12 11 10 42 42 H 1.07999 * 119.21977 * 180.02562 * 13 12 11 43 43 H 1.09006 * 109.47582 * 189.56609 * 21 19 7 44 44 H 1.08999 * 109.47254 * 309.56908 * 21 19 7 45 45 H 0.97002 * 119.99936 * 355.34212 * 22 21 19 46 46 H 0.97010 * 119.99828 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0409 -0.7231 1.2484 5 6 3.5710 -0.6950 1.2659 6 6 4.1051 -1.4318 0.0283 7 7 3.5047 -0.8291 -1.1697 8 6 4.2811 -0.3863 -2.1784 9 8 3.7807 0.2025 -3.1176 10 6 5.7358 -0.6157 -2.1434 11 6 6.2589 -1.8113 -1.6643 12 6 7.6441 -1.9927 -1.6459 13 6 8.4809 -1.0252 -2.0853 14 7 8.0133 0.1567 -2.5610 15 7 8.6217 1.3130 -3.0696 16 7 7.6742 2.1340 -3.3741 17 7 6.5243 1.6215 -3.1119 18 6 6.6692 0.4089 -2.6096 19 6 2.0414 -0.7238 -1.2497 20 1 1.6054 -1.7215 -1.3006 21 6 1.6517 0.0705 -2.4979 22 7 1.9519 -0.7208 -3.6937 23 6 1.5991 -0.2524 -4.9311 24 1 1.0999 0.7006 -5.0256 25 6 1.8840 -1.0020 -6.0642 26 7 1.5453 -0.5514 -7.2535 27 14 2.7481 -2.6500 -5.9009 28 1 1.7366 -3.7261 -5.7465 29 1 3.5609 -2.9054 -7.1172 30 1 3.6338 -2.6286 -4.7091 31 1 -0.3633 -1.0276 0.0015 32 1 -0.3633 0.5151 0.8893 33 1 -0.3633 0.5126 -0.8907 34 1 1.6583 -0.2245 2.1389 35 1 1.6967 -1.7573 1.2352 36 1 3.9160 0.3388 1.2540 37 1 3.9335 -1.1892 2.1673 38 1 3.8339 -2.4861 0.0819 39 1 5.1897 -1.3332 -0.0176 40 1 5.6014 -2.5916 -1.3105 41 1 8.0531 -2.9222 -1.2784 42 1 9.5467 -1.1976 -2.0579 43 1 0.5852 0.2938 -2.4683 44 1 2.2173 1.0018 -2.5271 45 1 2.4006 -1.5766 -3.6089 46 1 1.7441 -1.0754 -8.0454 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001496462621.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:34:11 Heat of formation + Delta-G solvation = 184.273626 kcal Electronic energy + Delta-G solvation = -31906.759218 eV Core-core repulsion = 27837.392939 eV Total energy + Delta-G solvation = -4069.366279 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 3.14 seconds Orbital eigenvalues (eV) -43.26955 -40.58935 -38.58347 -37.34604 -35.23080 -33.95192 -33.35400 -32.27907 -31.98986 -30.85654 -30.44271 -27.46055 -26.35467 -25.31584 -24.31629 -24.09551 -23.03511 -22.29424 -21.17542 -20.48668 -19.58391 -18.70728 -17.74462 -17.43828 -16.81697 -16.59466 -16.08298 -15.57579 -15.14703 -14.82344 -14.59450 -14.43722 -14.15430 -13.77826 -13.58660 -13.25136 -13.07978 -13.01263 -12.82804 -12.71106 -12.54648 -12.43091 -12.27603 -12.19589 -11.78261 -11.74240 -11.47731 -11.15787 -11.14494 -10.89964 -10.86855 -10.73773 -10.69439 -10.28610 -10.20132 -10.01787 -9.57824 -8.95884 -8.76395 -8.47775 -8.32316 -6.98212 -5.76677 -2.88606 -0.07838 0.46489 1.64377 2.18365 2.62494 2.99976 3.34111 3.36259 3.41899 3.45290 3.60935 3.90761 4.29519 4.39790 4.55492 4.60390 4.64177 4.71824 4.79329 4.85662 4.97047 5.15447 5.23120 5.25282 5.35839 5.42994 5.45618 5.55636 5.57603 5.59452 5.60265 5.61980 5.71606 5.74653 5.79659 5.84006 5.95095 6.01448 6.11706 6.24358 6.27549 6.39336 6.46958 6.76876 7.10863 7.64052 8.02107 8.41706 8.45348 8.61991 9.21767 9.93934 10.13193 11.41416 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.007839 B = 0.006029 C = 0.004141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3571.108601 B = 4642.871414 C = 6760.072499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.099 4.099 3 H 0.076 0.924 4 C -0.112 4.112 5 C -0.134 4.134 6 C 0.098 3.902 7 N -0.612 5.612 8 C 0.509 3.491 9 O -0.414 6.414 10 C -0.078 4.078 11 C -0.058 4.058 12 C -0.135 4.135 13 C 0.097 3.903 14 N -0.303 5.303 15 N -0.118 5.118 16 N -0.013 5.013 17 N -0.293 5.293 18 C 0.270 3.730 19 C 0.148 3.852 20 H 0.071 0.929 21 C 0.155 3.845 22 N -0.709 5.709 23 C -0.195 4.195 24 H 0.092 0.908 25 C -0.006 4.006 26 N -0.924 5.924 27 Si 0.885 3.115 28 H -0.286 1.286 29 H -0.292 1.292 30 H -0.280 1.280 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.067 0.933 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.066 0.934 37 H 0.071 0.929 38 H 0.068 0.932 39 H 0.086 0.914 40 H 0.160 0.840 41 H 0.168 0.832 42 H 0.178 0.822 43 H 0.035 0.965 44 H 0.057 0.943 45 H 0.357 0.643 46 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.186 -7.545 22.749 25.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.119 4.119 3 H 0.095 0.905 4 C -0.150 4.150 5 C -0.173 4.173 6 C -0.025 4.025 7 N -0.351 5.351 8 C 0.293 3.707 9 O -0.281 6.281 10 C -0.089 4.089 11 C -0.085 4.085 12 C -0.158 4.158 13 C -0.032 4.032 14 N -0.084 5.084 15 N -0.101 5.101 16 N -0.006 5.006 17 N -0.150 5.150 18 C 0.011 3.989 19 C 0.045 3.955 20 H 0.089 0.911 21 C 0.028 3.972 22 N -0.350 5.350 23 C -0.325 4.325 24 H 0.110 0.890 25 C -0.201 4.201 26 N -0.571 5.571 27 Si 0.716 3.284 28 H -0.213 1.213 29 H -0.219 1.219 30 H -0.207 1.207 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.085 0.915 37 H 0.090 0.910 38 H 0.086 0.914 39 H 0.104 0.896 40 H 0.178 0.822 41 H 0.185 0.815 42 H 0.195 0.805 43 H 0.053 0.947 44 H 0.074 0.926 45 H 0.189 0.811 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 9.244 -5.540 21.281 23.854 hybrid contribution 0.904 -2.243 0.327 2.440 sum 10.148 -7.782 21.608 25.109 Atomic orbital electron populations 1.21854 0.94227 1.02116 1.02292 1.21473 0.96159 1.00245 0.94030 0.90519 1.21573 0.94903 1.00824 0.97709 1.21995 0.96516 1.01410 0.97359 1.22105 0.98616 0.96900 0.84891 1.47667 1.06229 1.63400 1.17779 1.17458 0.84243 0.84821 0.84170 1.91280 1.70881 1.34047 1.31842 1.20436 0.94037 0.91885 1.02510 1.21956 0.95568 0.95859 0.95085 1.20902 0.92811 0.99661 1.02439 1.21529 1.01751 0.82247 0.97630 1.48888 1.07129 1.13506 1.38846 1.82725 1.16752 0.89059 1.21548 1.78006 0.93372 1.20040 1.09223 1.75238 1.15313 1.05290 1.19176 1.23654 0.83458 0.94216 0.97554 1.21595 0.78113 0.99635 0.96152 0.91103 1.21102 0.97244 0.95453 0.83370 1.42817 1.68431 1.20722 1.03031 1.19185 1.27727 1.03436 0.82184 0.88984 1.24651 1.01624 0.98696 0.95157 1.69699 1.51836 1.38488 0.97126 0.86489 0.79739 0.85322 0.76805 1.21265 1.21852 1.20652 0.92584 0.92715 0.91405 0.91787 0.91797 0.91481 0.91035 0.91422 0.89639 0.82214 0.81463 0.80523 0.94733 0.92567 0.81072 0.93040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 50. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 8.98 37.16 0.33 -1.22 16 2 C -0.10 -1.13 2.34 -90.49 -0.21 -1.34 16 3 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 4 C -0.11 -0.96 5.17 -26.69 -0.14 -1.10 16 5 C -0.13 -1.08 6.10 -26.39 -0.16 -1.24 16 6 C 0.10 0.88 4.91 -3.48 -0.02 0.87 16 7 N -0.61 -8.53 2.97 -166.25 -0.49 -9.02 16 8 C 0.51 9.07 6.78 -12.57 -0.09 8.99 16 9 O -0.41 -9.64 10.76 5.26 0.06 -9.59 16 10 C -0.08 -1.18 5.35 -102.71 -0.55 -1.73 16 11 C -0.06 -0.56 7.48 -38.74 -0.29 -0.85 16 12 C -0.13 -0.92 9.92 -40.09 -0.40 -1.31 16 13 C 0.10 0.86 11.15 -16.90 -0.19 0.67 16 14 N -0.30 -4.42 3.94 -10.99 -0.04 -4.46 16 15 N -0.12 -2.00 13.99 60.35 0.84 -1.15 16 16 N -0.01 -0.26 13.36 60.35 0.81 0.54 16 17 N -0.29 -6.10 12.24 32.20 0.39 -5.71 16 18 C 0.27 4.73 7.92 -154.52 -1.22 3.51 16 19 C 0.15 2.15 2.39 -67.60 -0.16 1.99 16 20 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 21 C 0.15 3.05 4.80 -4.05 -0.02 3.03 16 22 N -0.71 -17.14 3.04 -59.91 -0.18 -17.33 16 23 C -0.19 -5.68 10.18 -15.06 -0.15 -5.83 16 24 H 0.09 2.89 8.06 -52.49 -0.42 2.47 16 25 C -0.01 -0.17 5.50 -17.43 -0.10 -0.26 16 26 N -0.92 -29.86 13.97 55.49 0.78 -29.08 16 27 Si 0.89 22.91 27.74 -169.99 -4.71 18.20 16 28 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 29 H -0.29 -7.74 7.11 56.52 0.40 -7.34 16 30 H -0.28 -6.88 6.52 56.52 0.37 -6.51 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.81 6.43 -51.93 -0.33 0.48 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.07 0.49 8.11 -51.93 -0.42 0.07 16 39 H 0.09 0.67 4.64 -51.93 -0.24 0.43 16 40 H 0.16 1.14 6.46 -52.49 -0.34 0.80 16 41 H 0.17 0.36 8.06 -52.49 -0.42 -0.06 16 42 H 0.18 0.89 8.06 -52.49 -0.42 0.46 16 43 H 0.04 0.67 6.25 -51.93 -0.32 0.35 16 44 H 0.06 1.26 6.29 -51.93 -0.33 0.93 16 45 H 0.36 8.51 4.96 -40.82 -0.20 8.31 16 46 H 0.26 7.99 8.31 -40.82 -0.34 7.65 16 LS Contribution 362.45 15.07 5.46 5.46 Total: -1.00 -38.53 362.45 -6.46 -44.99 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -6.01 Total: 2.97 kcal Atomic # 6 Polarization: 7.53 SS G_CDS: -3.36 Total: 4.17 kcal Atomic # 7 Polarization: -68.31 SS G_CDS: 2.10 Total: -66.21 kcal Atomic # 8 Polarization: -9.64 SS G_CDS: 0.06 Total: -9.59 kcal Atomic # 14 Polarization: 22.91 SS G_CDS: -4.71 Total: 18.20 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -38.53 -6.46 -44.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496462621.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 229.263 kcal (2) G-P(sol) polarization free energy of solvation -38.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 190.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 184.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.14 seconds