Wall clock time and date at job start Wed Apr 1 2020 02:51:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46818 * 2 1 4 4 N 1.46505 * 109.47053 * 180.02562 * 3 2 1 5 5 C 1.36939 * 119.99802 * 275.30857 * 4 3 2 6 6 H 1.07997 * 120.00287 * 37.58139 * 5 4 3 7 7 C 1.38807 * 119.99759 * 217.57712 * 5 4 3 8 8 N 1.31618 * 120.00472 * 21.42906 * 7 5 4 9 9 Si 1.86800 * 120.00098 * 201.42848 * 7 5 4 10 10 H 1.48501 * 109.47368 * 89.99879 * 9 7 5 11 11 H 1.48502 * 109.47447 * 210.00336 * 9 7 5 12 12 H 1.48505 * 109.46978 * 330.00465 * 9 7 5 13 13 C 1.46500 * 119.99841 * 95.31333 * 4 3 2 14 14 C 1.52993 * 109.46742 * 269.99864 * 13 4 3 15 15 N 1.46502 * 109.46862 * 180.02562 * 14 13 4 16 16 C 1.34785 * 119.99926 * 180.02562 * 15 14 13 17 17 O 1.21536 * 120.00181 * 359.97438 * 16 15 14 18 18 C 1.47977 * 119.99839 * 179.97438 * 16 15 14 19 19 C 1.39924 * 120.11335 * 179.97438 * 18 16 15 20 20 C 1.38482 * 117.97313 * 179.97438 * 19 18 16 21 21 C 1.39353 * 118.02893 * 359.97438 * 20 19 18 22 22 N 1.39516 * 120.02992 * 179.97438 * 21 20 19 23 23 C 1.37229 * 126.49515 * 185.20648 * 22 21 20 24 24 C 1.34590 * 106.82622 * 180.26053 * 23 22 21 25 25 N 1.34179 * 108.23194 * 359.74529 * 24 23 22 26 26 C 1.30452 * 109.38545 * 359.97438 * 25 24 23 27 27 N 1.32704 * 119.93687 * 0.25279 * 21 20 19 28 28 N 1.28354 * 122.19324 * 359.46900 * 27 21 20 29 29 H 1.09000 * 109.47015 * 299.99061 * 1 2 3 30 30 H 1.08992 * 109.47310 * 59.99737 * 1 2 3 31 31 H 1.09001 * 109.46896 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47474 * 240.00694 * 2 1 3 33 33 H 1.08999 * 109.47679 * 120.00342 * 2 1 3 34 34 H 1.09002 * 109.47071 * 60.00659 * 3 2 1 35 35 H 1.08992 * 109.47395 * 300.00211 * 3 2 1 36 36 H 0.96996 * 120.00495 * 179.97438 * 8 7 5 37 37 H 1.08997 * 109.46656 * 149.99881 * 13 4 3 38 38 H 1.09002 * 109.47113 * 29.99840 * 13 4 3 39 39 H 1.08997 * 109.47531 * 60.00553 * 14 13 4 40 40 H 1.09002 * 109.47297 * 299.99863 * 14 13 4 41 41 H 0.96994 * 120.00549 * 359.97438 * 15 14 13 42 42 H 1.08006 * 121.01747 * 0.02562 * 19 18 16 43 43 H 1.07997 * 120.98603 * 179.97438 * 20 19 18 44 44 H 1.08003 * 126.58956 * 0.03474 * 23 22 21 45 45 H 1.08003 * 125.88689 * 179.71860 * 24 23 22 46 46 H 1.07999 * 125.73128 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1901 1.3327 1.1799 6 1 3.8186 0.6871 1.9619 7 6 5.3622 2.0512 1.3715 8 7 5.6024 3.1240 0.6478 9 14 6.5989 1.4954 2.6565 10 1 7.5686 0.5568 2.0370 11 1 7.3244 2.6768 3.1889 12 1 5.8868 0.8108 3.7654 13 6 4.2369 1.5603 -1.2642 14 6 4.4917 0.1650 -1.8378 15 7 5.2241 0.2827 -3.1011 16 6 5.5605 -0.8254 -3.7908 17 8 5.2565 -1.9222 -3.3644 18 6 6.2998 -0.7065 -5.0671 19 6 6.6507 -1.8553 -5.7847 20 6 7.3416 -1.6926 -6.9738 21 6 7.6446 -0.3954 -7.3829 22 7 8.3398 -0.1833 -8.5738 23 6 8.7927 1.0210 -9.0511 24 6 9.4002 0.7709 -10.2258 25 7 9.3292 -0.5479 -10.4627 26 6 8.7005 -1.1312 -9.4797 27 7 7.2761 0.6377 -6.6359 28 7 6.6312 0.4907 -5.5359 29 1 -0.3633 0.5137 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5137 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 1.6766 1.9563 0.8901 35 1 1.6766 1.9564 -0.8899 36 1 6.4213 3.6262 0.7820 37 1 5.1893 2.0599 -1.0871 38 1 3.6474 2.1423 -1.9727 39 1 3.5392 -0.3346 -2.0148 40 1 5.0811 -0.4170 -1.1293 41 1 5.4664 1.1580 -3.4416 42 1 6.3899 -2.8390 -5.4229 43 1 7.6369 -2.5458 -7.5665 44 1 8.6798 1.9849 -8.5772 45 1 9.8645 1.5052 -10.8674 46 1 8.4964 -2.1888 -9.4009 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567434751.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:51:27 Heat of formation + Delta-G solvation = 113.996173 kcal Electronic energy + Delta-G solvation = -28713.726902 eV Core-core repulsion = 24641.313165 eV Total energy + Delta-G solvation = -4072.413738 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.93238 -41.43145 -39.27982 -36.57034 -35.38553 -34.49847 -33.75587 -32.93079 -31.55960 -30.76020 -30.03169 -28.32433 -25.98153 -25.59552 -25.24269 -23.55485 -22.14003 -21.74156 -21.15008 -20.76188 -20.17142 -19.44919 -18.29210 -17.86200 -16.66163 -16.56369 -15.58039 -15.51649 -15.44048 -15.08216 -14.85716 -14.54321 -14.46746 -14.32957 -14.30276 -13.94741 -13.77994 -13.51027 -13.03004 -12.85557 -12.72686 -12.43191 -11.70720 -11.61711 -11.56279 -11.23891 -10.97656 -10.91594 -10.79124 -10.74834 -10.51218 -10.41806 -10.35564 -10.20009 -10.05814 -9.94307 -9.70231 -9.68337 -9.08162 -8.72625 -8.52271 -6.67244 -5.87485 -3.46906 -0.29859 0.12633 1.51003 1.73887 2.50840 2.63097 2.99407 3.31280 3.32669 3.40691 3.41606 3.43046 3.64593 3.88992 4.02955 4.20715 4.38143 4.43092 4.57086 4.81941 5.02754 5.09447 5.20933 5.23158 5.37787 5.43749 5.62920 5.64721 5.72162 5.95079 6.03568 6.12504 6.15632 6.24754 6.35911 6.46167 6.51045 6.57311 6.61391 6.65708 6.91481 6.94084 7.13807 7.40396 7.46854 7.63165 7.76921 7.94794 8.21299 8.43852 9.09933 9.71789 10.29531 11.12593 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.013507 B = 0.002222 C = 0.002054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2072.497402 B =12597.378507 C =13628.796478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.145 4.145 3 C 0.147 3.853 4 N -0.578 5.578 5 C -0.263 4.263 6 H 0.063 0.937 7 C 0.014 3.986 8 N -0.885 5.885 9 Si 0.897 3.103 10 H -0.286 1.286 11 H -0.290 1.290 12 H -0.276 1.276 13 C 0.136 3.864 14 C 0.093 3.907 15 N -0.691 5.691 16 C 0.566 3.434 17 O -0.532 6.532 18 C 0.024 3.976 19 C -0.034 4.034 20 C -0.136 4.136 21 C 0.300 3.700 22 N -0.410 5.410 23 C -0.022 4.022 24 C -0.026 4.026 25 N -0.473 5.473 26 C 0.194 3.806 27 N -0.247 5.247 28 N -0.172 5.172 29 H 0.049 0.951 30 H 0.046 0.954 31 H 0.043 0.957 32 H 0.052 0.948 33 H 0.058 0.942 34 H 0.047 0.953 35 H 0.035 0.965 36 H 0.256 0.744 37 H 0.100 0.900 38 H 0.031 0.969 39 H 0.058 0.942 40 H 0.070 0.930 41 H 0.409 0.591 42 H 0.176 0.824 43 H 0.165 0.835 44 H 0.188 0.812 45 H 0.180 0.820 46 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.689 -7.598 -18.232 19.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.185 4.185 3 C 0.021 3.979 4 N -0.298 5.298 5 C -0.392 4.392 6 H 0.080 0.920 7 C -0.186 4.186 8 N -0.527 5.527 9 Si 0.726 3.274 10 H -0.212 1.212 11 H -0.217 1.217 12 H -0.201 1.201 13 C 0.008 3.992 14 C -0.031 4.031 15 N -0.340 5.340 16 C 0.348 3.652 17 O -0.408 6.408 18 C -0.124 4.124 19 C -0.063 4.063 20 C -0.166 4.166 21 C 0.066 3.934 22 N -0.094 5.094 23 C -0.151 4.151 24 C -0.170 4.170 25 N -0.189 5.189 26 C -0.087 4.087 27 N -0.094 5.094 28 N -0.019 5.019 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.077 0.923 34 H 0.065 0.935 35 H 0.053 0.947 36 H 0.066 0.934 37 H 0.118 0.882 38 H 0.050 0.950 39 H 0.076 0.924 40 H 0.088 0.912 41 H 0.245 0.755 42 H 0.193 0.807 43 H 0.183 0.817 44 H 0.205 0.795 45 H 0.197 0.803 46 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 2.835 -6.930 -18.279 19.753 hybrid contribution 0.608 -1.015 0.909 1.492 sum 3.443 -7.945 -17.369 19.408 Atomic orbital electron populations 1.21721 0.97322 1.00403 1.01035 1.22188 0.93836 1.00938 1.01544 1.20951 0.85000 0.92974 0.99012 1.43601 0.99447 1.84744 1.02001 1.19025 1.05679 1.20558 0.93986 0.91970 1.25198 1.00827 0.94513 0.98107 1.69985 1.25654 1.14641 1.42414 0.86393 0.81633 0.77902 0.81479 1.21249 1.21677 1.20140 1.21076 1.00621 0.90914 0.86555 1.22678 0.94919 1.03475 0.82049 1.46087 1.55386 1.08666 1.23867 1.17417 0.79939 0.85500 0.82390 1.90814 1.55138 1.26255 1.68641 1.23193 0.99587 0.91338 0.98269 1.22412 0.91036 1.01531 0.91328 1.21955 1.00119 0.96450 0.98077 1.20060 0.93140 0.92504 0.87734 1.42979 1.41537 1.09761 1.15144 1.23116 1.03437 0.90325 0.98183 1.22476 1.04725 0.93068 0.96716 1.70359 1.17345 1.07395 1.23848 1.25467 1.00553 0.96620 0.86071 1.73166 1.09197 1.26193 1.00884 1.73325 1.03859 1.21436 1.03270 0.93176 0.93466 0.93814 0.92976 0.92318 0.93508 0.94698 0.93416 0.88204 0.95023 0.92388 0.91151 0.75519 0.80660 0.81719 0.79485 0.80251 0.76904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 9.91 37.16 0.37 -1.73 16 2 C -0.15 -2.55 6.23 -26.73 -0.17 -2.72 16 3 C 0.15 2.96 5.72 -4.04 -0.02 2.93 16 4 N -0.58 -13.54 2.43 -173.24 -0.42 -13.96 16 5 C -0.26 -6.85 9.45 -15.06 -0.14 -6.99 16 6 H 0.06 1.64 7.92 -52.49 -0.42 1.22 16 7 C 0.01 0.38 4.95 -17.43 -0.09 0.29 16 8 N -0.89 -24.32 11.47 55.49 0.64 -23.68 16 9 Si 0.90 21.04 29.60 -169.99 -5.03 16.01 16 10 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 12 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 13 C 0.14 2.93 5.45 -4.05 -0.02 2.91 16 14 C 0.09 1.80 6.00 -4.04 -0.02 1.77 16 15 N -0.69 -11.35 5.55 -61.21 -0.34 -11.69 16 16 C 0.57 8.89 7.81 -12.27 -0.10 8.79 16 17 O -0.53 -9.60 16.39 5.33 0.09 -9.51 16 18 C 0.02 0.30 6.83 -82.84 -0.57 -0.26 16 19 C -0.03 -0.30 9.72 -38.86 -0.38 -0.68 16 20 C -0.14 -0.96 9.58 -39.08 -0.37 -1.34 16 21 C 0.30 2.90 7.58 -154.17 -1.17 1.73 16 22 N -0.41 -3.67 2.98 -63.68 -0.19 -3.86 16 23 C -0.02 -0.20 11.19 -16.43 -0.18 -0.38 16 24 C -0.03 -0.22 11.85 -17.82 -0.21 -0.44 16 25 N -0.47 -4.65 11.24 -14.45 -0.16 -4.81 16 26 C 0.19 1.49 11.91 -89.54 -1.07 0.43 16 27 N -0.25 -3.01 11.07 31.34 0.35 -2.67 16 28 N -0.17 -2.28 10.73 33.32 0.36 -1.92 16 29 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.05 0.93 6.64 -51.93 -0.34 0.59 16 33 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 34 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 35 H 0.03 0.66 7.83 -51.93 -0.41 0.25 16 36 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 37 H 0.10 2.44 5.52 -51.93 -0.29 2.16 16 38 H 0.03 0.64 7.86 -51.93 -0.41 0.23 16 39 H 0.06 1.11 6.64 -51.93 -0.34 0.77 16 40 H 0.07 1.53 8.14 -51.93 -0.42 1.10 16 41 H 0.41 6.24 7.82 -40.82 -0.32 5.92 16 42 H 0.18 1.28 7.71 -52.48 -0.40 0.88 16 43 H 0.17 0.47 6.86 -52.49 -0.36 0.11 16 44 H 0.19 1.42 8.06 -52.48 -0.42 0.99 16 45 H 0.18 1.08 8.06 -52.48 -0.42 0.65 16 46 H 0.21 0.71 7.11 -52.49 -0.37 0.34 16 LS Contribution 392.09 15.07 5.91 5.91 Total: -1.00 -32.01 392.09 -9.13 -41.14 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -6.18 Total: 4.72 kcal Atomic # 6 Polarization: 8.46 SS G_CDS: -4.14 Total: 4.32 kcal Atomic # 7 Polarization: -62.82 SS G_CDS: 0.23 Total: -62.59 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: 0.09 Total: -9.51 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.03 Total: 16.01 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -32.01 -9.13 -41.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567434751.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.133 kcal (2) G-P(sol) polarization free energy of solvation -32.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds