Wall clock time and date at job start Wed Apr 1 2020 02:34:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.46972 * 2 1 4 4 C 1.53003 * 109.47012 * 119.99476 * 2 1 3 5 5 H 1.08994 * 109.47316 * 300.00826 * 4 2 1 6 6 C 1.52996 * 109.46766 * 180.02562 * 4 2 1 7 7 N 1.46504 * 109.46681 * 185.00093 * 6 4 2 8 8 C 1.34777 * 119.99854 * 179.97438 * 7 6 4 9 9 O 1.21603 * 119.99960 * 0.02562 * 8 7 6 10 10 C 1.47514 * 120.00093 * 180.27858 * 8 7 6 11 11 C 1.36625 * 125.76587 * 179.73084 * 10 8 7 12 12 N 1.35074 * 106.78741 * 179.97438 * 11 10 8 13 13 C 1.40247 * 126.60596 * 179.97438 * 12 11 10 14 14 C 1.39248 * 120.48261 * 179.97438 * 13 12 11 15 15 C 1.38507 * 118.36518 * 179.97438 * 14 13 12 16 16 C 1.38268 * 119.23283 * 0.02562 * 15 14 13 17 17 N 1.31862 * 120.90184 * 359.97438 * 16 15 14 18 18 C 1.31816 * 121.79451 * 359.72768 * 17 16 15 19 19 N 1.40208 * 106.78035 * 359.97438 * 12 11 10 20 20 N 1.28758 * 108.38431 * 359.74611 * 19 12 11 21 21 N 1.46503 * 109.46448 * 60.00357 * 4 2 1 22 22 C 1.36931 * 120.00128 * 274.99297 * 21 4 2 23 23 H 1.08004 * 120.00055 * 0.02562 * 22 21 4 24 24 C 1.38814 * 120.00318 * 180.02562 * 22 21 4 25 25 N 1.31618 * 119.99895 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 120.00241 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47142 * 90.00093 * 26 24 22 28 28 H 1.48499 * 109.46869 * 210.00248 * 26 24 22 29 29 H 1.48505 * 109.46756 * 329.99940 * 26 24 22 30 30 H 1.08997 * 109.47321 * 300.00578 * 1 2 3 31 31 H 1.09002 * 109.46946 * 60.00410 * 1 2 3 32 32 H 1.09000 * 109.46819 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47174 * 240.00139 * 2 1 3 34 34 H 1.08994 * 109.46963 * 180.02562 * 3 2 1 35 35 H 1.09002 * 109.46951 * 299.99587 * 3 2 1 36 36 H 1.09002 * 109.47122 * 59.99514 * 3 2 1 37 37 H 1.08998 * 109.47328 * 65.00426 * 6 4 2 38 38 H 1.08997 * 109.47540 * 305.00173 * 6 4 2 39 39 H 0.97000 * 120.00410 * 0.02562 * 7 6 4 40 40 H 1.07994 * 126.60451 * 359.96982 * 11 10 8 41 41 H 1.08005 * 120.81567 * 359.95636 * 14 13 12 42 42 H 1.08006 * 120.38316 * 180.02562 * 15 14 13 43 43 H 1.07997 * 119.55028 * 179.97438 * 16 15 14 44 44 H 1.08010 * 119.66461 * 180.26809 * 18 17 16 45 45 H 0.97000 * 119.99835 * 95.00087 * 21 4 2 46 46 H 0.96992 * 120.00299 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6766 -0.2074 2.1392 6 6 3.5700 -0.7206 1.2496 7 7 4.0583 -1.5127 2.3811 8 6 5.3834 -1.6540 2.5828 9 8 6.1736 -1.1235 1.8259 10 6 5.8752 -2.4567 3.7186 11 6 7.1866 -2.6813 4.0291 12 7 7.1983 -3.4590 5.1334 13 6 8.3313 -3.9388 5.8065 14 6 8.1947 -4.7358 6.9402 15 6 9.3431 -5.1860 7.5702 16 6 10.5775 -4.8319 7.0577 17 7 10.6724 -4.0754 5.9819 18 6 9.6050 -3.6308 5.3491 19 7 5.8594 -3.6943 5.4770 20 7 5.1088 -3.0850 4.6266 21 7 1.5517 -2.1024 1.2493 22 6 0.3102 -2.3897 1.7504 23 1 -0.3092 -1.5979 2.1454 24 6 -0.1524 -3.6985 1.7509 25 7 0.6026 -4.6634 1.2700 26 14 -1.8463 -4.0903 2.4339 27 1 -2.8525 -3.9976 1.3457 28 1 -1.8482 -5.4656 2.9940 29 1 -2.1848 -3.1190 3.5052 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 3.1300 1.4426 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6766 1.9564 0.8900 37 1 3.9329 0.3033 1.3394 38 1 3.9337 -1.1546 0.3183 39 1 3.4281 -1.9362 2.9847 40 1 8.0479 -2.3088 3.4946 41 1 7.2174 -4.9962 7.3189 42 1 9.2751 -5.8064 8.4517 43 1 11.4763 -5.1798 7.5452 44 1 9.7227 -3.0168 4.4684 45 1 2.1078 -2.8134 0.8943 46 1 0.2793 -5.5779 1.2699 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568453733.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:34:03 Heat of formation + Delta-G solvation = 110.965532 kcal Electronic energy + Delta-G solvation = -29033.863919 eV Core-core repulsion = 24961.318763 eV Total energy + Delta-G solvation = -4072.545156 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.64658 -40.65486 -39.18657 -37.19493 -35.40879 -33.87107 -33.07612 -32.98167 -31.26110 -30.65769 -30.19912 -28.04180 -26.12912 -25.17752 -24.90491 -23.87169 -22.85745 -22.21615 -21.56201 -20.30577 -19.47196 -18.83021 -17.67808 -17.25465 -16.84325 -16.44072 -16.20218 -15.92751 -15.33905 -15.20081 -14.72034 -14.47884 -14.28259 -14.09323 -13.86122 -13.74314 -13.42929 -13.25503 -12.89226 -12.74333 -12.41369 -12.21014 -12.00351 -11.86938 -11.60594 -11.58064 -11.03628 -10.90865 -10.80085 -10.63389 -10.40892 -10.27290 -10.21909 -10.07522 -9.99012 -9.85954 -9.77309 -9.50230 -9.13262 -8.87819 -8.62465 -6.98365 -5.76634 -3.05765 -0.09716 0.53583 1.32342 1.58807 1.66962 3.14804 3.33535 3.43421 3.44196 3.49656 3.50981 3.74429 3.91053 3.97488 4.11938 4.32745 4.56120 4.58768 4.67834 4.82668 4.84746 5.01864 5.35731 5.38876 5.43520 5.45261 5.56842 5.63874 5.65647 5.77936 5.78438 5.91770 6.01842 6.19497 6.25160 6.26263 6.39740 6.46534 6.55623 6.65163 6.67549 6.89554 7.09488 7.22683 7.32635 7.63533 7.71503 7.94913 8.40005 8.44200 9.52448 10.06721 10.42376 11.45208 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.012616 B = 0.002504 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2218.938342 B =11181.486136 C =13049.328515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.109 4.109 3 C -0.149 4.149 4 C 0.169 3.831 5 H 0.055 0.945 6 C 0.113 3.887 7 N -0.692 5.692 8 C 0.598 3.402 9 O -0.550 6.550 10 C -0.081 4.081 11 C 0.089 3.911 12 N -0.317 5.317 13 C 0.091 3.909 14 C -0.062 4.062 15 C -0.148 4.148 16 C 0.098 3.902 17 N -0.459 5.459 18 C 0.101 3.899 19 N -0.055 5.055 20 N -0.178 5.178 21 N -0.721 5.721 22 C -0.236 4.236 23 H 0.073 0.927 24 C -0.010 4.010 25 N -0.928 5.928 26 Si 0.902 3.098 27 H -0.291 1.291 28 H -0.293 1.293 29 H -0.282 1.282 30 H 0.040 0.960 31 H 0.031 0.969 32 H 0.087 0.913 33 H 0.063 0.937 34 H 0.051 0.949 35 H 0.045 0.955 36 H 0.049 0.951 37 H 0.070 0.930 38 H 0.067 0.933 39 H 0.419 0.581 40 H 0.209 0.791 41 H 0.155 0.845 42 H 0.150 0.850 43 H 0.167 0.833 44 H 0.167 0.833 45 H 0.385 0.615 46 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.529 3.417 9.868 21.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.131 4.131 3 C -0.207 4.207 4 C 0.058 3.942 5 H 0.073 0.927 6 C -0.011 4.011 7 N -0.342 5.342 8 C 0.381 3.619 9 O -0.428 6.428 10 C -0.218 4.218 11 C -0.064 4.064 12 N -0.096 5.096 13 C -0.004 4.004 14 C -0.089 4.089 15 C -0.168 4.168 16 C -0.059 4.059 17 N -0.167 5.167 18 C -0.059 4.059 19 N -0.034 5.034 20 N -0.052 5.052 21 N -0.362 5.362 22 C -0.367 4.367 23 H 0.091 0.909 24 C -0.206 4.206 25 N -0.576 5.576 26 Si 0.733 3.267 27 H -0.218 1.218 28 H -0.219 1.219 29 H -0.208 1.208 30 H 0.059 0.941 31 H 0.050 0.950 32 H 0.105 0.895 33 H 0.082 0.918 34 H 0.070 0.930 35 H 0.064 0.936 36 H 0.068 0.932 37 H 0.088 0.912 38 H 0.085 0.915 39 H 0.257 0.743 40 H 0.226 0.774 41 H 0.173 0.827 42 H 0.168 0.832 43 H 0.184 0.816 44 H 0.184 0.816 45 H 0.219 0.781 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 18.713 3.337 10.052 21.502 hybrid contribution -1.277 -0.610 0.162 1.424 sum 17.436 2.727 10.214 20.391 Atomic orbital electron populations 1.21821 0.94922 1.03947 0.98974 1.21734 0.96956 0.94375 1.00015 1.21947 1.00478 0.97350 1.00937 1.20554 0.89126 0.88346 0.96126 0.92748 1.21839 0.95959 0.94812 0.88520 1.45824 1.06115 1.51562 1.30684 1.16668 0.83181 0.79677 0.82336 1.90783 1.55820 1.49656 1.46582 1.21643 0.89972 1.08598 1.01596 1.23369 1.00599 0.93697 0.88742 1.47564 1.07346 1.34825 1.19906 1.18751 0.84882 1.00859 0.95926 1.21518 1.01394 0.93706 0.92325 1.22190 0.92238 1.00871 1.01524 1.23009 0.97983 0.93090 0.91829 1.67830 1.31078 1.09644 1.08101 1.22736 0.85337 0.98232 0.99623 1.82138 0.81338 1.20690 1.19261 1.74793 1.25885 1.04192 1.00371 1.42447 1.18134 1.01800 1.73808 1.19171 0.92676 0.92353 1.32492 0.90919 1.24720 0.98238 0.95885 1.01771 1.69655 1.36725 0.99833 1.51371 0.86272 0.84440 0.77409 0.78556 1.21839 1.21902 1.20755 0.94052 0.95021 0.89455 0.91844 0.93022 0.93580 0.93175 0.91209 0.91496 0.74285 0.77399 0.82729 0.83204 0.81562 0.81590 0.78081 0.93548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.50 8.26 37.16 0.31 -2.19 16 2 C -0.11 -1.84 2.69 -90.61 -0.24 -2.08 16 3 C -0.15 -2.06 8.84 37.16 0.33 -1.74 16 4 C 0.17 3.12 2.18 -67.93 -0.15 2.97 16 5 H 0.05 1.03 8.08 -51.93 -0.42 0.61 16 6 C 0.11 1.90 4.73 -4.04 -0.02 1.89 16 7 N -0.69 -12.10 5.39 -61.35 -0.33 -12.43 16 8 C 0.60 10.16 7.82 -12.48 -0.10 10.06 16 9 O -0.55 -10.02 16.86 5.27 0.09 -9.93 16 10 C -0.08 -1.23 6.99 -83.54 -0.58 -1.82 16 11 C 0.09 1.04 10.62 -16.71 -0.18 0.87 16 12 N -0.32 -3.75 3.82 -10.33 -0.04 -3.79 16 13 C 0.09 0.84 6.72 -83.43 -0.56 0.28 16 14 C -0.06 -0.48 9.80 -39.11 -0.38 -0.87 16 15 C -0.15 -0.79 10.10 -39.47 -0.40 -1.19 16 16 C 0.10 0.57 11.18 -17.53 -0.20 0.37 16 17 N -0.46 -3.74 10.35 -13.10 -0.14 -3.87 16 18 C 0.10 0.81 10.64 -17.35 -0.18 0.63 16 19 N -0.06 -0.82 13.20 60.35 0.80 -0.03 16 20 N -0.18 -2.97 12.03 32.85 0.40 -2.58 16 21 N -0.72 -16.54 4.44 -53.43 -0.24 -16.78 16 22 C -0.24 -6.04 7.57 -15.06 -0.11 -6.16 16 23 H 0.07 1.82 7.39 -52.48 -0.39 1.44 16 24 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 25 N -0.93 -27.15 13.06 55.49 0.72 -26.43 16 26 Si 0.90 21.90 29.55 -169.99 -5.02 16.88 16 27 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 28 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 29 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 30 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.09 1.86 6.01 -51.93 -0.31 1.55 16 33 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 34 H 0.05 0.67 6.54 -51.93 -0.34 0.33 16 35 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.07 1.08 6.71 -51.93 -0.35 0.73 16 38 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.42 7.89 7.82 -40.82 -0.32 7.57 16 40 H 0.21 1.66 7.15 -52.49 -0.38 1.28 16 41 H 0.16 1.19 7.82 -52.48 -0.41 0.78 16 42 H 0.15 0.36 8.06 -52.48 -0.42 -0.06 16 43 H 0.17 0.46 8.06 -52.49 -0.42 0.04 16 44 H 0.17 0.97 6.84 -52.48 -0.36 0.61 16 45 H 0.39 9.73 7.80 -40.82 -0.32 9.42 16 46 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 389.11 15.07 5.86 5.86 Total: -1.00 -32.17 389.11 -6.57 -38.74 By element: Atomic # 1 Polarization: 19.80 SS G_CDS: -6.11 Total: 13.69 kcal Atomic # 6 Polarization: 3.23 SS G_CDS: -2.57 Total: 0.67 kcal Atomic # 7 Polarization: -67.08 SS G_CDS: 1.17 Total: -65.91 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: 0.09 Total: -9.93 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.17 -6.57 -38.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568453733.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.705 kcal (2) G-P(sol) polarization free energy of solvation -32.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.739 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds