Wall clock time and date at job start Wed Apr 1 2020 02:29:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53004 * 109.47053 * 2 1 4 4 C 1.53000 * 109.47320 * 239.99995 * 2 1 3 5 5 C 1.53005 * 109.47359 * 119.99753 * 2 1 3 6 6 N 1.46500 * 109.46840 * 66.13181 * 5 2 1 7 7 C 1.46498 * 119.99620 * 272.40678 * 6 5 2 8 8 C 1.50702 * 109.47335 * 269.99742 * 7 6 5 9 9 H 1.08000 * 119.99958 * 0.02562 * 8 7 6 10 10 C 1.37871 * 120.00036 * 179.97438 * 8 7 6 11 11 N 1.31515 * 120.00442 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 119.99823 * 180.02562 * 10 8 7 13 13 H 1.48499 * 109.47167 * 0.02562 * 12 10 8 14 14 H 1.48503 * 109.47364 * 120.00218 * 12 10 8 15 15 H 1.48499 * 109.47303 * 240.00153 * 12 10 8 16 16 C 1.34774 * 119.99954 * 92.40714 * 6 5 2 17 17 O 1.21514 * 119.99709 * 174.62658 * 16 6 5 18 18 C 1.48172 * 120.00262 * 354.89960 * 16 6 5 19 19 C 1.39112 * 119.66889 * 186.25508 * 18 16 6 20 20 C 1.39686 * 118.91962 * 179.79603 * 19 18 16 21 21 C 1.48450 * 120.86991 * 180.24301 * 20 19 18 22 22 N 1.34053 * 126.67404 * 359.91925 * 21 20 19 23 23 N 1.28988 * 107.27008 * 179.86996 * 22 21 20 24 24 N 1.28732 * 108.94065 * 0.39872 * 23 22 21 25 25 H 0.96998 * 125.33535 * 179.76690 * 24 23 22 26 26 N 1.28868 * 109.32264 * 359.74678 * 24 23 22 27 27 C 1.39697 * 118.26279 * 0.47285 * 20 19 18 28 28 C 1.38331 * 119.21644 * 359.74720 * 27 20 19 29 29 N 1.31578 * 121.02516 * 0.02562 * 28 27 20 30 30 H 1.09003 * 109.47547 * 299.99839 * 1 2 3 31 31 H 1.08994 * 109.47501 * 60.00201 * 1 2 3 32 32 H 1.09002 * 109.46946 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47339 * 180.02562 * 3 2 1 34 34 H 1.09001 * 109.47214 * 300.00238 * 3 2 1 35 35 H 1.09003 * 109.46813 * 59.99711 * 3 2 1 36 36 H 1.08999 * 109.47244 * 286.30555 * 4 2 1 37 37 H 1.09000 * 109.46598 * 46.31099 * 4 2 1 38 38 H 1.09002 * 109.46825 * 166.30692 * 4 2 1 39 39 H 1.09002 * 109.46676 * 306.13280 * 5 2 1 40 40 H 1.09004 * 109.47041 * 186.12992 * 5 2 1 41 41 H 1.09002 * 109.47692 * 30.00289 * 7 6 5 42 42 H 1.09003 * 109.47255 * 150.00444 * 7 6 5 43 43 H 0.96996 * 120.00241 * 179.97438 * 11 10 8 44 44 H 1.07996 * 120.54417 * 0.02736 * 19 18 16 45 45 H 1.07993 * 120.39031 * 179.73107 * 27 20 19 46 46 H 1.08004 * 119.48853 * 180.02562 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0400 -0.7212 1.2493 6 7 1.6758 -2.1384 1.1778 7 6 0.3773 -2.5875 1.6862 8 6 0.5073 -2.9540 3.1421 9 1 1.4616 -2.8613 3.6392 10 6 -0.5923 -3.4067 3.8399 11 7 -1.7545 -3.5192 3.2347 12 14 -0.4313 -3.8604 5.6448 13 1 0.9702 -3.6454 6.0861 14 1 -1.3403 -3.0079 6.4525 15 1 -0.7960 -5.2878 5.8309 16 6 2.5354 -3.0290 0.6444 17 8 2.2762 -4.2158 0.6733 18 6 3.7992 -2.5614 0.0283 19 6 4.6189 -3.4688 -0.6350 20 6 5.8046 -3.0102 -1.2138 21 6 6.7087 -3.9399 -1.9364 22 7 6.5252 -5.2552 -2.1186 23 7 7.5323 -5.6921 -2.7959 24 7 8.3327 -4.7124 -3.0336 25 1 9.1674 -4.7760 -3.5235 26 7 7.8509 -3.6336 -2.5188 27 6 6.1198 -1.6549 -1.0908 28 6 5.2524 -0.8190 -0.4106 29 7 4.1406 -1.2817 0.1195 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 3.1299 1.4426 -0.0005 34 1 1.6765 1.9564 -0.8900 35 1 1.6765 1.9564 0.8900 36 1 1.8891 -1.7948 -1.1360 37 1 1.4918 -0.3672 -2.1223 38 1 3.1024 -0.5154 -1.3792 39 1 1.5898 -0.2746 2.1358 40 1 3.1245 -0.6271 1.3058 41 1 -0.3528 -1.7855 1.5771 42 1 0.0472 -3.4588 1.1204 43 1 -2.5280 -3.8381 3.7255 44 1 4.3412 -4.5102 -0.7045 45 1 7.0299 -1.2643 -1.5213 46 1 5.4916 0.2297 -0.3132 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589129321.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:29:31 Heat of formation + Delta-G solvation = 156.239935 kcal Electronic energy + Delta-G solvation = -30819.245653 eV Core-core repulsion = 26748.663742 eV Total energy + Delta-G solvation = -4070.581911 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.79220 -40.92461 -38.64485 -36.95681 -34.97859 -34.25625 -33.80743 -32.39197 -31.72427 -31.43833 -27.82525 -26.95201 -26.68166 -25.93362 -25.13699 -25.05511 -24.00757 -22.71351 -22.02538 -19.87902 -19.20380 -18.61279 -17.47354 -16.90207 -16.72275 -16.44632 -16.06066 -15.31445 -15.20314 -14.80809 -14.54312 -14.24774 -14.14519 -13.89445 -13.69610 -13.42186 -13.07692 -12.69114 -12.57600 -12.29992 -12.09439 -11.96095 -11.91436 -11.72228 -11.57008 -11.42261 -11.30959 -11.15606 -11.04288 -10.84909 -10.71358 -10.47500 -10.29609 -10.13301 -10.07024 -9.57312 -9.46138 -9.34245 -9.20218 -8.64624 -8.35107 -7.50220 -5.97422 -4.00965 0.29913 0.76284 0.90881 1.87796 2.05091 3.20059 3.24212 3.35055 3.42650 3.47245 3.70275 3.90062 4.08465 4.29917 4.51990 4.72348 4.81279 4.85894 4.93369 5.11679 5.23564 5.30017 5.33564 5.37421 5.47396 5.62998 5.74323 5.91684 5.93758 5.98446 6.02048 6.03780 6.15545 6.22653 6.28208 6.33603 6.39279 6.46876 6.63274 6.75692 6.84194 6.98587 7.19698 7.49065 7.61023 7.69996 7.80838 7.99413 8.31071 8.47567 8.93154 9.09781 9.63292 11.10506 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.012026 B = 0.003381 C = 0.002844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2327.645183 B = 8280.587155 C = 9842.840787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.072 4.072 3 C -0.130 4.130 4 C -0.138 4.138 5 C 0.092 3.908 6 N -0.565 5.565 7 C 0.239 3.761 8 C -0.521 4.521 9 H 0.058 0.942 10 C 0.061 3.939 11 N -0.895 5.895 12 Si 0.896 3.104 13 H -0.274 1.274 14 H -0.284 1.284 15 H -0.283 1.283 16 C 0.552 3.448 17 O -0.530 6.530 18 C 0.101 3.899 19 C -0.077 4.077 20 C 0.018 3.982 21 C 0.219 3.781 22 N -0.255 5.255 23 N -0.046 5.046 24 N -0.227 5.227 25 H 0.476 0.524 26 N -0.288 5.288 27 C -0.124 4.124 28 C 0.086 3.914 29 N -0.419 5.419 30 H 0.054 0.946 31 H 0.041 0.959 32 H 0.068 0.932 33 H 0.054 0.946 34 H 0.046 0.954 35 H 0.052 0.948 36 H 0.051 0.949 37 H 0.039 0.961 38 H 0.058 0.942 39 H 0.067 0.933 40 H 0.129 0.871 41 H 0.046 0.954 42 H 0.040 0.960 43 H 0.262 0.738 44 H 0.160 0.840 45 H 0.145 0.855 46 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.659 8.216 -13.616 25.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.073 4.073 3 C -0.188 4.188 4 C -0.195 4.195 5 C -0.032 4.032 6 N -0.294 5.294 7 C 0.120 3.880 8 C -0.560 4.560 9 H 0.076 0.924 10 C -0.141 4.141 11 N -0.535 5.535 12 Si 0.724 3.276 13 H -0.198 1.198 14 H -0.211 1.211 15 H -0.209 1.209 16 C 0.336 3.664 17 O -0.407 6.407 18 C -0.037 4.037 19 C -0.100 4.100 20 C 0.006 3.994 21 C -0.061 4.061 22 N -0.128 5.128 23 N -0.041 5.041 24 N -0.073 5.073 25 H 0.331 0.669 26 N -0.140 5.140 27 C -0.146 4.146 28 C -0.072 4.072 29 N -0.132 5.132 30 H 0.073 0.927 31 H 0.060 0.940 32 H 0.087 0.913 33 H 0.073 0.927 34 H 0.065 0.935 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.058 0.942 38 H 0.077 0.923 39 H 0.086 0.914 40 H 0.146 0.854 41 H 0.064 0.936 42 H 0.058 0.942 43 H 0.071 0.929 44 H 0.177 0.823 45 H 0.163 0.837 46 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 18.897 7.471 -13.327 24.300 hybrid contribution 0.951 -0.410 0.335 1.089 sum 19.848 7.061 -12.992 24.751 Atomic orbital electron populations 1.22071 0.94924 1.02888 1.00573 1.20735 0.95436 0.94902 0.96225 1.21736 1.00670 0.95417 1.00990 1.22202 1.00380 1.00441 0.96507 1.22522 1.04331 0.80353 0.96002 1.48072 1.18373 1.06999 1.55918 1.19531 0.77873 0.96345 0.94238 1.21475 0.95662 1.43801 0.95057 0.92377 1.24908 0.95167 0.95505 0.98505 1.69937 1.00114 1.46991 1.36447 0.86469 0.78034 0.78150 0.84924 1.19817 1.21071 1.20949 1.17687 0.82573 0.86140 0.79993 1.90795 1.75324 1.15608 1.58991 1.21661 0.96452 0.88763 0.96817 1.22149 0.91502 1.02680 0.93646 1.17409 0.92739 0.91207 0.97998 1.23459 0.92044 0.90748 0.99857 1.76215 1.15530 1.08496 1.12544 1.78992 0.97467 1.15772 1.11855 1.47753 1.20642 1.02345 1.36565 0.66948 1.74892 1.11978 1.12526 1.14605 1.22259 1.01159 0.92164 0.99006 1.22947 0.89595 1.00671 0.93947 1.68267 1.15475 1.14198 1.15277 0.92728 0.93981 0.91337 0.92659 0.93463 0.92928 0.93003 0.94205 0.92304 0.91422 0.85436 0.93602 0.94199 0.92868 0.82280 0.83748 0.81489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.40 7.44 37.15 0.28 -2.12 16 2 C -0.07 -1.06 0.76 -154.51 -0.12 -1.18 16 3 C -0.13 -1.52 8.43 37.16 0.31 -1.20 16 4 C -0.14 -2.02 6.94 37.16 0.26 -1.76 16 5 C 0.09 1.59 4.39 -4.04 -0.02 1.57 16 6 N -0.57 -12.15 1.96 -176.05 -0.34 -12.50 16 7 C 0.24 6.22 4.25 -5.19 -0.02 6.19 16 8 C -0.52 -14.89 9.39 -34.44 -0.32 -15.22 16 9 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 10 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 11 N -0.90 -26.69 13.29 55.43 0.74 -25.95 16 12 Si 0.90 22.19 29.54 -169.99 -5.02 17.17 16 13 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 14 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 15 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 16 C 0.55 11.81 6.15 -12.18 -0.07 11.73 16 17 O -0.53 -13.44 15.97 5.35 0.09 -13.35 16 18 C 0.10 1.65 5.11 -83.06 -0.42 1.22 16 19 C -0.08 -1.14 9.32 -38.72 -0.36 -1.50 16 20 C 0.02 0.21 5.91 -104.60 -0.62 -0.41 16 21 C 0.22 2.58 7.97 -156.30 -1.25 1.33 16 22 N -0.25 -3.34 12.33 32.15 0.40 -2.94 16 23 N -0.05 -0.47 13.47 60.35 0.81 0.34 16 24 N -0.23 -1.58 7.90 60.35 0.48 -1.10 16 25 H 0.48 0.83 8.96 -340.37 -3.05 -2.22 16 26 N -0.29 -2.65 12.17 32.17 0.39 -2.26 16 27 C -0.12 -1.14 9.80 -39.00 -0.38 -1.53 16 28 C 0.09 0.82 10.19 -17.63 -0.18 0.64 16 29 N -0.42 -5.57 3.43 -9.88 -0.03 -5.60 16 30 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.07 1.31 5.68 -51.93 -0.30 1.02 16 33 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.05 0.90 5.04 -51.93 -0.26 0.64 16 37 H 0.04 0.55 8.07 -51.93 -0.42 0.13 16 38 H 0.06 0.76 5.05 -51.93 -0.26 0.50 16 39 H 0.07 1.24 8.09 -51.93 -0.42 0.82 16 40 H 0.13 2.01 4.63 -72.03 -0.33 1.68 16 41 H 0.05 1.19 5.67 -51.93 -0.29 0.90 16 42 H 0.04 1.17 7.50 -51.93 -0.39 0.78 16 43 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 44 H 0.16 2.57 7.57 -52.49 -0.40 2.17 16 45 H 0.14 0.97 7.96 -52.49 -0.42 0.55 16 46 H 0.17 0.99 8.06 -52.48 -0.42 0.57 16 LS Contribution 371.99 15.07 5.61 5.61 Total: -1.00 -35.14 371.99 -8.53 -43.67 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: -8.62 Total: -2.49 kcal Atomic # 6 Polarization: 2.44 SS G_CDS: -3.01 Total: -0.58 kcal Atomic # 7 Polarization: -52.46 SS G_CDS: 2.44 Total: -50.02 kcal Atomic # 8 Polarization: -13.44 SS G_CDS: 0.09 Total: -13.35 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -35.14 -8.53 -43.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589129321.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 199.913 kcal (2) G-P(sol) polarization free energy of solvation -35.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 164.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.673 kcal (6) G-S(sol) free energy of system = (1) + (5) 156.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds