Wall clock time and date at job start Wed Apr 1 2020 02:29:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46747 * 2 1 4 4 C 1.52999 * 109.47002 * 240.00427 * 2 1 3 5 5 C 1.50698 * 109.47403 * 59.99758 * 4 2 1 6 6 H 1.08000 * 119.99826 * 0.02562 * 5 4 2 7 7 C 1.37872 * 119.99783 * 180.02562 * 5 4 2 8 8 N 1.31513 * 120.00235 * 359.97438 * 7 5 4 9 9 Si 1.86807 * 119.99995 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47140 * 89.99634 * 9 7 5 11 11 H 1.48495 * 109.47021 * 210.00061 * 9 7 5 12 12 H 1.48504 * 109.46713 * 329.99774 * 9 7 5 13 13 C 1.52996 * 109.47255 * 120.00021 * 2 1 3 14 14 N 1.46504 * 109.47025 * 300.00138 * 13 2 1 15 15 C 1.34776 * 119.99808 * 180.02562 * 14 13 2 16 16 O 1.21581 * 120.00420 * 359.97438 * 15 14 13 17 17 N 1.34785 * 119.99913 * 180.02562 * 15 14 13 18 18 C 1.39845 * 119.99634 * 174.51654 * 17 15 14 19 19 C 1.38956 * 119.95407 * 326.49579 * 18 17 15 20 20 C 1.37886 * 120.04532 * 179.72681 * 19 18 17 21 21 C 1.39358 * 119.95082 * 0.56991 * 20 19 18 22 22 C 1.48423 * 120.04673 * 179.72012 * 21 20 19 23 23 N 1.34063 * 126.67463 * 180.02562 * 22 21 20 24 24 N 1.28983 * 107.26350 * 179.97438 * 23 22 21 25 25 N 1.28733 * 108.95079 * 359.97438 * 24 23 22 26 26 H 0.96998 * 125.33800 * 179.97438 * 25 24 23 27 27 N 1.28871 * 109.31938 * 359.76486 * 25 24 23 28 28 C 1.39359 * 119.90718 * 359.70651 * 21 20 19 29 29 C 1.37878 * 119.94969 * 359.97438 * 28 21 20 30 30 H 1.08999 * 109.47129 * 299.99542 * 1 2 3 31 31 H 1.09003 * 109.47346 * 60.00145 * 1 2 3 32 32 H 1.09007 * 109.46934 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47027 * 179.97438 * 3 2 1 34 34 H 1.08997 * 109.47761 * 300.00064 * 3 2 1 35 35 H 1.09000 * 109.47273 * 59.99916 * 3 2 1 36 36 H 1.08998 * 109.46531 * 179.97438 * 4 2 1 37 37 H 1.08997 * 109.46792 * 299.99232 * 4 2 1 38 38 H 0.97003 * 120.00149 * 180.02562 * 8 7 5 39 39 H 1.08998 * 109.47446 * 180.02562 * 13 2 1 40 40 H 1.09004 * 109.47322 * 59.99813 * 13 2 1 41 41 H 0.96998 * 120.00352 * 0.02562 * 14 13 2 42 42 H 0.96996 * 119.99516 * 354.78547 * 17 15 14 43 43 H 1.07999 * 119.98175 * 359.97438 * 19 18 17 44 44 H 1.07999 * 120.02335 * 180.26751 * 20 19 18 45 45 H 1.08000 * 120.02512 * 180.02562 * 28 21 20 46 46 H 1.08002 * 119.97297 * 180.02562 * 29 28 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5377 -0.0107 -2.4797 6 1 0.9171 0.8676 -2.3806 7 6 1.8703 -0.4821 -3.7319 8 7 2.6264 -1.5513 -3.8526 9 14 1.2482 0.3989 -5.2572 10 1 2.2271 1.4399 -5.6614 11 1 1.0824 -0.5802 -6.3613 12 1 -0.0595 1.0373 -4.9612 13 6 2.0401 -0.7212 1.2492 14 7 1.5517 -0.0306 2.4454 15 6 1.8778 -0.4908 3.6695 16 8 2.5768 -1.4793 3.7811 17 7 1.4280 0.1443 4.7700 18 6 1.6693 -0.3965 6.0369 19 6 1.7060 -1.7751 6.2074 20 6 1.9494 -2.3102 7.4546 21 6 2.1468 -1.4675 8.5469 22 6 2.4027 -2.0414 9.8915 23 7 2.6091 -1.3594 11.0271 24 7 2.7911 -2.2250 11.9658 25 7 2.7067 -3.4082 11.4656 26 1 2.8061 -4.2356 11.9619 27 7 2.4650 -3.3209 10.2027 28 6 2.1039 -0.0853 8.3747 29 6 1.8668 0.4456 7.1245 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1299 1.4426 0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.6766 1.9563 0.8900 36 1 3.1300 -0.7207 -1.2494 37 1 1.6768 -1.7488 -1.2492 38 1 2.8608 -1.8827 -4.7337 39 1 3.1300 -0.7209 1.2495 40 1 1.6767 -1.7489 1.2493 41 1 0.9937 0.7578 2.3565 42 1 0.9337 0.9742 4.6829 43 1 1.5478 -2.4278 5.3617 44 1 1.9821 -3.3817 7.5859 45 1 2.2571 0.5695 9.2198 46 1 1.8339 1.5168 6.9906 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001603139607.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:29:05 Heat of formation + Delta-G solvation = 86.940123 kcal Electronic energy + Delta-G solvation = -28316.637077 eV Core-core repulsion = 24243.050101 eV Total energy + Delta-G solvation = -4073.586976 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -45.42576 -41.75650 -39.99520 -38.68936 -36.18555 -35.32790 -35.18918 -34.23495 -33.72740 -31.99464 -30.52099 -29.02312 -27.92088 -27.56575 -25.75078 -25.48489 -24.61491 -23.73063 -22.65497 -21.80636 -20.30939 -20.03445 -19.26312 -18.55299 -18.30614 -18.11058 -17.55139 -16.81842 -16.59281 -16.15985 -15.89488 -15.48190 -15.20966 -15.17847 -14.79762 -14.65229 -14.37959 -14.30146 -14.09393 -13.90698 -13.74855 -13.67465 -13.03438 -12.86127 -12.70846 -12.60116 -12.52050 -12.35905 -12.30024 -12.20304 -12.19785 -11.96276 -11.94405 -11.50536 -11.42289 -11.04654 -10.94117 -10.83138 -10.49125 -10.10117 -9.94543 -8.99339 -8.11950 -6.19525 -0.30677 0.19099 0.43570 1.25347 1.44298 1.44594 1.45181 1.54496 1.57237 2.06938 2.45987 2.71704 2.86892 3.18955 3.20281 3.22818 3.95454 4.00273 4.01862 4.12571 4.22783 4.25962 4.35151 4.44378 4.53191 4.60515 4.71588 4.76790 4.81070 5.00577 5.06282 5.13311 5.16580 5.19286 5.28739 5.39958 5.44824 5.47232 5.51707 5.54601 5.57541 5.60550 5.63549 5.84076 5.92389 5.95212 5.97059 6.33324 6.95389 6.99504 7.14412 7.46697 7.48402 9.00400 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.038461 B = 0.001584 C = 0.001545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.826910 B =17669.357591 C =18113.968487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.064 4.064 3 C -0.122 4.122 4 C 0.039 3.961 5 C -0.513 4.513 6 H 0.074 0.926 7 C -0.005 4.005 8 N -0.938 5.938 9 Si 0.958 3.042 10 H -0.277 1.277 11 H -0.291 1.291 12 H -0.259 1.259 13 C 0.160 3.840 14 N -0.715 5.715 15 C 0.698 3.302 16 O -0.615 6.615 17 N -0.670 5.670 18 C 0.185 3.815 19 C -0.143 4.143 20 C -0.060 4.060 21 C -0.055 4.055 22 C 0.216 3.784 23 N -0.290 5.290 24 N -0.057 5.057 25 N -0.203 5.203 26 H 0.494 0.506 27 N -0.303 5.303 28 C -0.051 4.051 29 C -0.139 4.139 30 H 0.072 0.928 31 H 0.054 0.946 32 H 0.036 0.964 33 H 0.036 0.964 34 H 0.054 0.946 35 H 0.072 0.928 36 H -0.014 1.014 37 H -0.013 1.013 38 H 0.259 0.741 39 H 0.046 0.954 40 H 0.047 0.953 41 H 0.413 0.587 42 H 0.428 0.572 43 H 0.121 0.879 44 H 0.136 0.864 45 H 0.154 0.846 46 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.007 4.137 29.976 30.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.065 4.065 3 C -0.179 4.179 4 C 0.001 3.999 5 C -0.551 4.551 6 H 0.092 0.908 7 C -0.202 4.202 8 N -0.580 5.580 9 Si 0.783 3.217 10 H -0.202 1.202 11 H -0.217 1.217 12 H -0.183 1.183 13 C 0.036 3.964 14 N -0.371 5.371 15 C 0.399 3.601 16 O -0.495 6.495 17 N -0.319 5.319 18 C 0.088 3.912 19 C -0.164 4.164 20 C -0.080 4.080 21 C -0.059 4.059 22 C -0.064 4.064 23 N -0.163 5.163 24 N -0.052 5.052 25 N -0.053 5.053 26 H 0.352 0.648 27 N -0.155 5.155 28 C -0.071 4.071 29 C -0.159 4.159 30 H 0.091 0.909 31 H 0.073 0.927 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.074 0.926 35 H 0.091 0.909 36 H 0.005 0.995 37 H 0.005 0.995 38 H 0.067 0.933 39 H 0.064 0.936 40 H 0.065 0.935 41 H 0.251 0.749 42 H 0.267 0.733 43 H 0.139 0.861 44 H 0.154 0.846 45 H 0.172 0.828 46 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -4.217 3.188 30.514 30.969 hybrid contribution -0.255 -0.315 -1.600 1.650 sum -4.472 2.873 28.915 29.399 Atomic orbital electron populations 1.21696 0.93487 1.00988 1.01685 1.20717 0.96768 0.96366 0.92639 1.21697 0.99914 0.94546 1.01736 1.18975 0.94326 0.94252 0.92305 1.21606 1.30384 1.12035 0.91067 0.90846 1.25939 0.95733 0.95852 1.02707 1.70122 1.38840 1.24974 1.24016 0.85552 0.79183 0.78081 0.78854 1.20247 1.21745 1.18296 1.21114 0.97691 0.95081 0.82537 1.45012 1.55473 1.33445 1.03173 1.16098 0.80051 0.82786 0.81195 1.90942 1.43336 1.29055 1.86151 1.42439 1.58736 1.28309 1.02461 1.17850 0.96780 0.92354 0.84263 1.21067 1.03266 0.94586 0.97447 1.21004 0.96130 1.00306 0.90608 1.17298 1.08389 0.93935 0.86288 1.23807 1.01274 0.85591 0.95719 1.76047 1.18294 1.24996 0.96958 1.78829 1.15304 0.88778 1.22307 1.47776 1.42707 1.10785 1.04057 0.64766 1.74937 1.21502 1.21271 0.97837 1.21128 0.95238 0.92873 0.97892 1.21046 1.03264 1.01081 0.90530 0.90950 0.92695 0.94467 0.94478 0.92650 0.90904 0.99545 0.99506 0.93253 0.93560 0.93459 0.74861 0.73271 0.86061 0.84623 0.82801 0.81494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.79 8.05 71.98 0.58 -3.22 16 2 C -0.06 -2.29 0.54 -52.18 -0.03 -2.32 16 3 C -0.12 -3.79 8.05 71.98 0.58 -3.22 16 4 C 0.04 1.93 4.04 29.85 0.12 2.05 16 5 C -0.51 -26.86 7.65 25.60 0.20 -26.67 16 6 H 0.07 3.58 5.68 -2.91 -0.02 3.56 16 7 C -0.01 -0.30 5.46 84.65 0.46 0.16 16 8 N -0.94 -56.49 13.29 21.45 0.28 -56.21 16 9 Si 0.96 42.96 29.54 68.60 2.03 44.98 16 10 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 11 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 12 H -0.26 -10.86 7.11 99.48 0.71 -10.16 16 13 C 0.16 5.37 4.56 86.38 0.39 5.76 16 14 N -0.71 -17.45 4.96 -478.53 -2.37 -19.83 16 15 C 0.70 18.58 8.29 179.05 1.48 20.06 16 16 O -0.62 -22.26 14.04 -3.97 -0.06 -22.32 16 17 N -0.67 -11.93 5.34 -317.11 -1.69 -13.63 16 18 C 0.18 3.60 6.28 38.21 0.24 3.84 16 19 C -0.14 -3.37 8.63 22.36 0.19 -3.17 16 20 C -0.06 -1.25 9.69 22.46 0.22 -1.03 16 21 C -0.05 -1.06 5.88 -20.02 -0.12 -1.18 16 22 C 0.22 4.28 7.93 137.36 1.09 5.36 16 23 N -0.29 -5.84 12.23 -52.19 -0.64 -6.47 16 24 N -0.06 -0.94 13.47 37.02 0.50 -0.44 16 25 N -0.20 -2.31 7.90 37.02 0.29 -2.01 16 26 H 0.49 0.67 8.96 -347.53 -3.12 -2.45 16 27 N -0.30 -5.20 12.08 -52.14 -0.63 -5.83 16 28 C -0.05 -0.79 9.69 22.45 0.22 -0.57 16 29 C -0.14 -1.95 9.95 22.36 0.22 -1.73 16 30 H 0.07 1.62 6.86 -2.39 -0.02 1.61 16 31 H 0.05 1.87 6.62 -2.39 -0.02 1.85 16 32 H 0.04 1.24 8.14 -2.38 -0.02 1.22 16 33 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.05 1.88 6.62 -2.39 -0.02 1.86 16 35 H 0.07 1.62 6.86 -2.39 -0.02 1.60 16 36 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 37 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 38 H 0.26 14.83 8.31 -92.71 -0.77 14.06 16 39 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 40 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 41 H 0.41 7.15 6.18 -92.71 -0.57 6.58 16 42 H 0.43 3.99 8.83 -92.71 -0.82 3.17 16 43 H 0.12 3.43 6.42 -2.91 -0.02 3.41 16 44 H 0.14 2.66 7.88 -2.91 -0.02 2.64 16 45 H 0.15 1.92 7.88 -2.91 -0.02 1.90 16 46 H 0.17 1.21 8.06 -2.91 -0.02 1.18 16 Total: -1.00 -76.46 382.86 0.12 -76.34 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: -3.44 Total: 11.28 kcal Atomic # 6 Polarization: -11.71 SS G_CDS: 5.85 Total: -5.86 kcal Atomic # 7 Polarization: -100.16 SS G_CDS: -4.26 Total: -104.43 kcal Atomic # 8 Polarization: -22.26 SS G_CDS: -0.06 Total: -22.32 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.98 kcal Total: -76.46 0.12 -76.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603139607.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.285 kcal (2) G-P(sol) polarization free energy of solvation -76.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.345 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds