Wall clock time and date at job start Wed Apr 1 2020 02:28:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47150 * 2 1 4 4 C 1.52996 * 109.47184 * 119.99749 * 2 1 3 5 5 C 1.53005 * 109.47536 * 174.99729 * 4 2 1 6 6 H 1.08997 * 109.46547 * 55.00293 * 5 4 2 7 7 C 1.52994 * 109.47067 * 174.99845 * 5 4 2 8 8 N 1.46508 * 109.46933 * 175.00366 * 7 5 4 9 9 C 1.36938 * 120.00239 * 180.02562 * 8 7 5 10 10 H 1.08007 * 119.99299 * 359.97438 * 9 8 7 11 11 C 1.38804 * 120.00145 * 180.02562 * 9 8 7 12 12 N 1.31621 * 120.00041 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 119.99921 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.47372 * 59.99954 * 13 11 9 15 15 H 1.48503 * 109.46942 * 179.97438 * 13 11 9 16 16 H 1.48496 * 109.47160 * 299.99675 * 13 11 9 17 17 N 1.46494 * 109.47194 * 295.00511 * 5 4 2 18 18 C 1.34778 * 120.00287 * 84.99617 * 17 5 4 19 19 O 1.21569 * 119.99853 * 359.97438 * 18 17 5 20 20 C 1.47711 * 120.00030 * 179.97438 * 18 17 5 21 21 C 1.41502 * 126.51592 * 179.97438 * 20 18 17 22 22 C 1.35367 * 105.50027 * 179.76883 * 21 20 18 23 23 N 1.35034 * 107.23104 * 0.36702 * 22 21 20 24 24 C 1.46498 * 124.88574 * 179.87237 * 23 22 21 25 25 C 1.53006 * 109.46726 * 124.72469 * 24 23 22 26 26 F 1.39900 * 109.46764 * 174.99968 * 25 24 23 27 27 F 1.39897 * 109.47129 * 294.99946 * 25 24 23 28 28 N 1.28469 * 110.22599 * 359.61323 * 23 22 21 29 29 H 1.08994 * 109.47391 * 300.00261 * 1 2 3 30 30 H 1.08999 * 109.47221 * 60.00503 * 1 2 3 31 31 H 1.08999 * 109.47147 * 179.97438 * 1 2 3 32 32 H 1.09009 * 109.47438 * 239.99712 * 2 1 3 33 33 H 1.09005 * 109.47282 * 299.99600 * 3 2 1 34 34 H 1.08995 * 109.47153 * 60.00169 * 3 2 1 35 35 H 1.09003 * 109.47299 * 180.02562 * 3 2 1 36 36 H 1.09007 * 109.47465 * 54.99959 * 4 2 1 37 37 H 1.08994 * 109.47522 * 295.00160 * 4 2 1 38 38 H 1.08991 * 109.47563 * 295.00269 * 7 5 4 39 39 H 1.09002 * 109.47324 * 55.00491 * 7 5 4 40 40 H 0.96994 * 119.99443 * 0.02562 * 8 7 5 41 41 H 0.96998 * 119.99826 * 180.02562 * 12 11 9 42 42 H 0.97006 * 119.99972 * 264.99601 * 17 5 4 43 43 H 1.07995 * 127.24774 * 359.97438 * 21 20 18 44 44 H 1.08000 * 126.38477 * 180.26291 * 22 21 20 45 45 H 1.08995 * 109.47463 * 4.72905 * 24 23 22 46 46 H 1.09000 * 109.47136 * 244.72470 * 24 23 22 47 47 H 1.09000 * 109.47050 * 55.00161 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2492 5 6 3.5648 -0.8311 1.1880 6 1 3.9953 0.1611 1.0528 7 6 4.0850 -1.4393 2.4919 8 7 5.5304 -1.6550 2.3876 9 6 6.2199 -2.1946 3.4405 10 1 5.6982 -2.4608 4.3479 11 6 7.5894 -2.3985 3.3419 12 7 8.2251 -2.0735 2.2361 13 14 8.5300 -3.1339 4.7784 14 1 7.9881 -4.4816 5.0871 15 1 9.9672 -3.2485 4.4223 16 1 8.3826 -2.2568 5.9676 17 7 3.9479 -1.6872 0.0627 18 6 4.0652 -1.1631 -1.1735 19 8 3.8526 0.0201 -1.3547 20 6 4.4520 -2.0262 -2.3080 21 6 4.6143 -1.6240 -3.6549 22 6 4.9752 -2.7431 -4.3257 23 7 5.0157 -3.7516 -3.4286 24 6 5.3624 -5.1396 -3.7435 25 6 6.5194 -5.5915 -2.8500 26 9 6.7754 -6.9492 -3.0696 27 9 7.6631 -4.8459 -3.1553 28 7 4.7116 -3.3175 -2.2583 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 3.1300 1.4425 -0.0005 36 1 1.6053 -1.7198 1.2953 37 1 1.7516 -0.1583 2.1369 38 1 3.8779 -0.7594 3.3181 39 1 3.5876 -2.3923 2.6722 40 1 5.9988 -1.4155 1.5728 41 1 9.1821 -2.2163 2.1671 42 1 4.1172 -2.6314 0.2072 43 1 4.4818 -0.6323 -4.0614 44 1 5.1890 -2.8161 -5.3818 45 1 5.6616 -5.2112 -4.7891 46 1 4.4971 -5.7790 -3.5685 47 1 6.2530 -5.4365 -1.8044 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001667093473.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:28:06 Heat of formation + Delta-G solvation = -53.894431 kcal Electronic energy + Delta-G solvation = -31236.479045 eV Core-core repulsion = 26706.095838 eV Total energy + Delta-G solvation = -4530.383207 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.176 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.26675 -47.26527 -42.72824 -39.62297 -36.61360 -34.91025 -34.31276 -33.36923 -31.33349 -30.68400 -29.57577 -28.74187 -26.84235 -25.53119 -24.77738 -23.02226 -22.43649 -21.63609 -20.63004 -19.76188 -19.60607 -18.35951 -17.83433 -17.42538 -17.26102 -16.86357 -16.26021 -15.72814 -15.60652 -15.12433 -14.61092 -14.25278 -14.10447 -13.97623 -13.94173 -13.61719 -13.58833 -13.34839 -13.27061 -13.04455 -12.96383 -12.86052 -12.68675 -12.07750 -11.98851 -11.87201 -11.52964 -11.45980 -11.02525 -10.93566 -10.88910 -10.77842 -10.48896 -10.21737 -10.21179 -9.96574 -9.68276 -9.64662 -9.33967 -9.16034 -8.88113 -8.52234 -6.92262 -5.74107 -3.04038 1.56599 2.02423 2.12965 3.16775 3.44473 3.48992 3.50324 3.52384 3.71315 3.93772 3.97827 4.30711 4.51793 4.59115 4.61748 4.84910 4.91588 5.01030 5.20398 5.23585 5.27986 5.56799 5.57785 5.64369 5.70603 5.72478 5.76540 5.92293 6.01533 6.08676 6.14949 6.16972 6.26238 6.31816 6.36436 6.49829 6.52695 6.54541 6.70948 6.73063 6.89727 7.02149 7.69173 7.70303 8.03458 8.43269 8.60332 9.55032 10.11619 10.47043 11.47855 Molecular weight = 344.18amu Principal moments of inertia in cm(-1) A = 0.005792 B = 0.005106 C = 0.002963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4833.224826 B = 5482.185940 C = 9447.254390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.093 4.093 3 C -0.138 4.138 4 C -0.122 4.122 5 C 0.136 3.864 6 H 0.093 0.907 7 C 0.144 3.856 8 N -0.730 5.730 9 C -0.243 4.243 10 H 0.070 0.930 11 C -0.011 4.011 12 N -0.929 5.929 13 Si 0.906 3.094 14 H -0.287 1.287 15 H -0.292 1.292 16 H -0.286 1.286 17 N -0.694 5.694 18 C 0.601 3.399 19 O -0.529 6.529 20 C 0.005 3.995 21 C -0.176 4.176 22 C -0.013 4.013 23 N -0.292 5.292 24 C 0.079 3.921 25 C 0.253 3.747 26 F -0.196 7.196 27 F -0.194 7.194 28 N -0.260 5.260 29 H 0.050 0.950 30 H 0.048 0.952 31 H 0.047 0.953 32 H 0.075 0.925 33 H 0.042 0.958 34 H 0.038 0.962 35 H 0.076 0.924 36 H 0.061 0.939 37 H 0.071 0.929 38 H 0.034 0.966 39 H 0.023 0.977 40 H 0.386 0.614 41 H 0.255 0.745 42 H 0.409 0.591 43 H 0.164 0.836 44 H 0.182 0.818 45 H 0.125 0.875 46 H 0.124 0.876 47 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.034 -4.238 -15.362 19.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.112 4.112 3 C -0.195 4.195 4 C -0.161 4.161 5 C 0.031 3.969 6 H 0.111 0.889 7 C 0.016 3.984 8 N -0.375 5.375 9 C -0.374 4.374 10 H 0.087 0.913 11 C -0.207 4.207 12 N -0.578 5.578 13 Si 0.737 3.263 14 H -0.213 1.213 15 H -0.217 1.217 16 H -0.213 1.213 17 N -0.344 5.344 18 C 0.385 3.615 19 O -0.404 6.404 20 C -0.157 4.157 21 C -0.203 4.203 22 C -0.155 4.155 23 N -0.080 5.080 24 C -0.043 4.043 25 C 0.198 3.802 26 F -0.177 7.177 27 F -0.175 7.175 28 N -0.095 5.095 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.093 0.907 33 H 0.062 0.938 34 H 0.057 0.943 35 H 0.095 0.905 36 H 0.080 0.920 37 H 0.089 0.911 38 H 0.051 0.949 39 H 0.041 0.959 40 H 0.221 0.779 41 H 0.065 0.935 42 H 0.244 0.756 43 H 0.182 0.818 44 H 0.199 0.801 45 H 0.143 0.857 46 H 0.142 0.858 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -12.020 -4.492 -14.617 19.450 hybrid contribution 1.021 -0.344 -0.100 1.082 sum -10.999 -4.836 -14.717 18.999 Atomic orbital electron populations 1.21862 0.96472 1.00860 1.01099 1.21146 0.94111 0.97285 0.98638 1.21831 1.03112 0.94921 0.99639 1.22023 0.95065 1.00593 0.98398 1.21421 0.93938 0.95632 0.85899 0.88949 1.20963 0.87050 0.97309 0.93071 1.42337 1.01427 1.76036 1.17720 1.19156 0.90375 1.33597 0.94244 0.91250 1.24736 0.96588 1.02070 0.97333 1.69665 1.08615 1.53471 1.26007 0.86291 0.79084 0.78974 0.81937 1.21329 1.21747 1.21270 1.45826 1.68242 1.13686 1.06686 1.16811 0.76976 0.86204 0.81506 1.90774 1.50853 1.14682 1.84107 1.22139 1.07595 0.90331 0.95658 1.21788 1.06720 0.99763 0.92061 1.22841 1.07564 0.87518 0.97547 1.45033 1.49460 1.08251 1.05234 1.22906 0.99484 0.79865 1.02071 1.22131 0.82516 0.73152 1.02387 1.93017 1.94786 1.33376 1.96515 1.93056 1.53282 1.76298 1.94870 1.73524 1.17075 1.13425 1.05428 0.93129 0.93281 0.93409 0.90668 0.93837 0.94297 0.90491 0.91986 0.91080 0.94874 0.95884 0.77944 0.93485 0.75597 0.81805 0.80071 0.85685 0.85770 0.85135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.19 37.15 0.34 -1.35 16 2 C -0.09 -1.29 2.38 -90.63 -0.22 -1.50 16 3 C -0.14 -1.98 8.03 37.16 0.30 -1.68 16 4 C -0.12 -1.70 4.36 -26.73 -0.12 -1.81 16 5 C 0.14 2.28 2.33 -67.93 -0.16 2.12 16 6 H 0.09 1.73 5.92 -51.93 -0.31 1.42 16 7 C 0.14 2.83 5.82 -4.04 -0.02 2.80 16 8 N -0.73 -18.25 5.43 -59.91 -0.33 -18.58 16 9 C -0.24 -6.73 9.99 -15.06 -0.15 -6.88 16 10 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 11 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 12 N -0.93 -28.30 13.06 55.49 0.72 -27.57 16 13 Si 0.91 22.46 29.55 -169.99 -5.02 17.43 16 14 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 15 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 16 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 17 N -0.69 -11.65 4.47 -54.80 -0.24 -11.89 16 18 C 0.60 10.23 6.38 -12.39 -0.08 10.15 16 19 O -0.53 -9.62 11.88 5.30 0.06 -9.56 16 20 C 0.00 0.07 7.13 -82.77 -0.59 -0.52 16 21 C -0.18 -2.22 10.81 -39.36 -0.43 -2.65 16 22 C -0.01 -0.13 11.40 -17.17 -0.20 -0.33 16 23 N -0.29 -3.17 3.39 -61.33 -0.21 -3.38 16 24 C 0.08 0.57 6.59 -4.04 -0.03 0.54 16 25 C 0.25 2.57 5.37 37.16 0.20 2.77 16 26 F -0.20 -2.01 17.34 2.25 0.04 -1.97 16 27 F -0.19 -2.61 17.32 2.25 0.04 -2.57 16 28 N -0.26 -3.69 11.27 33.42 0.38 -3.31 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.08 1.16 5.19 -51.92 -0.27 0.90 16 33 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.08 1.28 4.75 -51.93 -0.25 1.03 16 36 H 0.06 0.82 8.14 -51.92 -0.42 0.40 16 37 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.39 10.41 7.33 -40.82 -0.30 10.11 16 41 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 42 H 0.41 6.96 8.33 -40.82 -0.34 6.62 16 43 H 0.16 1.87 8.06 -52.49 -0.42 1.45 16 44 H 0.18 1.02 8.06 -52.49 -0.42 0.59 16 45 H 0.13 0.52 8.04 -51.93 -0.42 0.10 16 46 H 0.12 0.61 8.14 -51.93 -0.42 0.19 16 47 H 0.13 1.44 7.96 -51.93 -0.41 1.02 16 LS Contribution 391.51 15.07 5.90 5.90 Total: -1.00 -33.60 391.51 -6.81 -40.42 By element: Atomic # 1 Polarization: 20.76 SS G_CDS: -6.91 Total: 13.84 kcal Atomic # 6 Polarization: 2.49 SS G_CDS: -1.24 Total: 1.25 kcal Atomic # 7 Polarization: -65.06 SS G_CDS: 0.32 Total: -64.74 kcal Atomic # 8 Polarization: -9.62 SS G_CDS: 0.06 Total: -9.56 kcal Atomic # 9 Polarization: -4.62 SS G_CDS: 0.08 Total: -4.54 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.60 -6.81 -40.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667093473.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.479 kcal (2) G-P(sol) polarization free energy of solvation -33.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds