Wall clock time and date at job start Wed Apr 1 2020 03:33:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08995 * 109.52493 * 2 1 4 4 C 1.53041 * 109.49726 * 120.07753 * 2 1 3 5 5 C 1.53044 * 109.53600 * 58.58570 * 4 2 1 6 6 C 1.53193 * 109.31496 * 61.36616 * 5 4 2 7 7 N 1.46926 * 108.77419 * 305.36531 * 6 5 4 8 8 C 1.34782 * 120.63244 * 233.58906 * 7 6 5 9 9 O 1.21572 * 120.00094 * 183.62478 * 8 7 6 10 10 C 1.47691 * 119.99675 * 3.62091 * 8 7 6 11 11 C 1.41599 * 120.03164 * 311.28001 * 10 8 7 12 12 C 1.35790 * 119.54264 * 179.71421 * 11 10 8 13 13 C 1.40854 * 119.38945 * 0.56133 * 12 11 10 14 14 N 1.32489 * 133.40911 * 179.69061 * 13 12 11 15 15 N 1.28534 * 110.23713 * 180.02562 * 14 13 12 16 16 N 1.28985 * 110.84594 * 0.02562 * 15 14 13 17 17 N 1.36930 * 119.93657 * 359.71053 * 13 12 11 18 18 C 1.35497 * 120.84340 * 0.02562 * 17 13 12 19 19 C 1.46928 * 118.73852 * 53.60667 * 7 6 5 20 20 H 1.08997 * 109.58650 * 66.32321 * 19 7 6 21 21 C 1.53005 * 109.58818 * 186.60539 * 19 7 6 22 22 N 1.46503 * 109.46908 * 284.51343 * 21 19 7 23 23 C 1.36937 * 120.00007 * 185.33636 * 22 21 19 24 24 H 1.08004 * 119.99539 * 0.02562 * 23 22 21 25 25 C 1.38808 * 120.00231 * 179.97438 * 23 22 21 26 26 N 1.31620 * 119.99914 * 0.02562 * 25 23 22 27 27 Si 1.86801 * 120.00275 * 179.97438 * 25 23 22 28 28 H 1.48496 * 109.46998 * 89.99938 * 27 25 23 29 29 H 1.48509 * 109.46802 * 330.00426 * 27 25 23 30 30 H 1.48494 * 109.47308 * 210.00172 * 27 25 23 31 31 H 1.08997 * 109.47781 * 180.08357 * 1 2 3 32 32 H 1.09008 * 109.47116 * 300.08547 * 1 2 3 33 33 H 1.09005 * 109.47183 * 60.07868 * 1 2 3 34 34 H 1.08996 * 109.46252 * 298.56979 * 4 2 1 35 35 H 1.08995 * 109.46447 * 178.60019 * 4 2 1 36 36 H 1.09007 * 109.49711 * 301.41125 * 5 4 2 37 37 H 1.09003 * 109.50004 * 181.31872 * 5 4 2 38 38 H 1.08999 * 109.58741 * 185.58030 * 6 5 4 39 39 H 1.08998 * 109.58553 * 65.14955 * 6 5 4 40 40 H 1.07993 * 120.22979 * 0.02562 * 11 10 8 41 41 H 1.08001 * 120.30128 * 180.28982 * 12 11 10 42 42 H 1.07997 * 119.82498 * 179.97438 * 18 17 13 43 43 H 1.08998 * 109.47155 * 164.50856 * 21 19 7 44 44 H 1.09000 * 109.46748 * 44.51008 * 21 19 7 45 45 H 0.97002 * 120.00116 * 5.33052 * 22 21 19 46 46 H 0.97002 * 119.99921 * 0.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0407 -0.7230 1.2484 5 6 1.5029 -2.1557 1.2661 6 6 2.0139 -2.9041 0.0309 7 7 1.6514 -2.1383 -1.1695 8 6 0.9746 -2.7222 -2.1782 9 8 0.7381 -2.0969 -3.1936 10 6 0.5202 -4.1216 -2.0499 11 6 1.4220 -5.1222 -1.6133 12 6 0.9921 -6.4047 -1.4932 13 6 -0.3420 -6.7197 -1.8171 14 7 -1.0392 -7.8463 -1.8090 15 7 -2.2451 -7.6256 -2.1954 16 7 -2.4164 -6.3782 -2.4752 17 7 -1.1928 -5.7347 -2.2425 18 6 -0.7690 -4.4529 -2.3583 19 6 2.0413 -0.7239 -1.2495 20 1 3.1273 -0.6465 -1.3005 21 6 1.4229 -0.0912 -2.4979 22 7 2.1610 -0.5306 -3.6847 23 6 1.8572 -0.0065 -4.9128 24 1 1.0738 0.7310 -5.0063 25 6 2.5569 -0.4223 -6.0372 26 7 3.5120 -1.3208 -5.9230 27 14 2.1421 0.2921 -7.7126 28 1 2.9674 1.5030 -7.9524 29 1 0.7033 0.6578 -7.7523 30 1 2.4257 -0.7166 -8.7648 31 1 -0.3634 -1.0276 0.0015 32 1 -0.3634 0.5152 0.8893 33 1 -0.3634 0.5126 -0.8907 34 1 1.6987 -0.1958 2.1389 35 1 3.1304 -0.7445 1.2354 36 1 0.4131 -2.1354 1.2542 37 1 1.8479 -2.6628 2.1672 38 1 1.5552 -3.8919 -0.0136 39 1 3.0978 -3.0043 0.0869 40 1 2.4431 -4.8663 -1.3725 41 1 1.6682 -7.1768 -1.1568 42 1 -1.4539 -3.6892 -2.6959 43 1 1.4751 0.9946 -2.4187 44 1 0.3809 -0.3996 -2.5832 45 1 2.8649 -1.1927 -3.6005 46 1 3.7266 -1.6926 -5.0532 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001667380021.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:33:44 Heat of formation + Delta-G solvation = 174.916302 kcal Electronic energy + Delta-G solvation = -31563.771856 eV Core-core repulsion = 27493.999813 eV Total energy + Delta-G solvation = -4069.772043 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -43.59049 -40.97403 -38.91670 -37.47122 -35.06512 -34.41655 -33.59577 -32.47723 -32.00748 -30.79888 -30.09334 -27.33319 -26.39425 -25.38851 -24.73248 -24.12413 -23.01862 -22.84770 -21.68807 -20.74251 -19.18290 -18.59225 -17.74892 -17.30288 -17.06184 -16.83432 -15.94334 -15.57071 -15.35109 -15.08379 -14.99640 -14.53358 -14.22395 -13.86967 -13.68895 -13.54731 -13.51927 -13.23643 -12.90978 -12.73222 -12.67021 -12.62770 -12.43098 -12.07040 -11.97444 -11.76271 -11.51139 -11.27285 -11.19254 -11.00713 -10.67007 -10.58471 -10.46481 -10.40190 -10.20727 -9.96660 -9.17746 -8.97004 -8.88581 -8.71262 -8.37022 -6.74999 -5.99773 -2.89350 0.00016 0.19391 1.41137 1.84570 2.56151 2.88997 3.09159 3.42044 3.55940 3.61717 3.74965 3.81868 4.17211 4.24234 4.48992 4.56201 4.60163 4.65566 4.73792 4.77232 4.87864 5.05294 5.06323 5.16573 5.29615 5.31206 5.36086 5.44888 5.49805 5.55979 5.61490 5.64630 5.68640 5.72457 5.75624 5.76334 5.93435 5.98714 6.04324 6.09046 6.21086 6.31481 6.39523 6.66276 7.00544 7.47062 7.89949 8.14578 8.37054 8.85548 9.34786 10.20910 10.36285 11.49373 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.008583 B = 0.004557 C = 0.003325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3261.603320 B = 6143.188242 C = 8419.065203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.099 4.099 3 H 0.082 0.918 4 C -0.114 4.114 5 C -0.137 4.137 6 C 0.099 3.901 7 N -0.601 5.601 8 C 0.523 3.477 9 O -0.425 6.425 10 C -0.126 4.126 11 C -0.033 4.033 12 C -0.099 4.099 13 C 0.246 3.754 14 N -0.327 5.327 15 N -0.010 5.010 16 N -0.108 5.108 17 N -0.298 5.298 18 C 0.154 3.846 19 C 0.147 3.853 20 H 0.073 0.927 21 C 0.164 3.836 22 N -0.709 5.709 23 C -0.301 4.301 24 H 0.060 0.940 25 C -0.051 4.051 26 N -0.948 5.948 27 Si 1.079 2.921 28 H -0.298 1.298 29 H -0.297 1.297 30 H -0.290 1.290 31 H 0.055 0.945 32 H 0.050 0.950 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.070 0.930 37 H 0.072 0.928 38 H 0.084 0.916 39 H 0.071 0.929 40 H 0.164 0.836 41 H 0.171 0.829 42 H 0.188 0.812 43 H 0.019 0.981 44 H 0.044 0.956 45 H 0.362 0.638 46 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.568 -4.148 19.177 19.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.119 4.119 3 H 0.101 0.899 4 C -0.151 4.151 5 C -0.175 4.175 6 C -0.024 4.024 7 N -0.338 5.338 8 C 0.306 3.694 9 O -0.293 6.293 10 C -0.136 4.136 11 C -0.059 4.059 12 C -0.122 4.122 13 C -0.008 4.008 14 N -0.187 5.187 15 N -0.003 5.003 16 N -0.092 5.092 17 N -0.077 5.077 18 C 0.024 3.976 19 C 0.045 3.955 20 H 0.091 0.909 21 C 0.036 3.964 22 N -0.353 5.353 23 C -0.432 4.432 24 H 0.078 0.922 25 C -0.248 4.248 26 N -0.595 5.595 27 Si 0.911 3.089 28 H -0.226 1.226 29 H -0.224 1.224 30 H -0.216 1.216 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.102 0.898 39 H 0.089 0.911 40 H 0.181 0.819 41 H 0.189 0.811 42 H 0.205 0.795 43 H 0.037 0.963 44 H 0.062 0.938 45 H 0.195 0.805 46 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -3.902 -4.590 16.682 17.737 hybrid contribution 0.451 0.386 1.747 1.845 sum -3.451 -4.204 18.429 19.215 Atomic orbital electron populations 1.21861 0.94842 1.01877 1.01705 1.21472 0.96717 0.99588 0.94142 0.89940 1.21543 1.00575 0.95296 0.97701 1.21965 1.01706 0.96414 0.97408 1.21987 1.00363 0.95286 0.84788 1.47705 1.57355 1.11222 1.17501 1.17676 0.82451 0.84752 0.84544 1.91355 1.50963 1.60531 1.26458 1.20056 0.92582 0.97447 1.03493 1.21585 1.00825 0.90994 0.92495 1.20295 0.90433 0.98026 1.03454 1.23044 0.94887 0.85354 0.97519 1.75140 0.98552 1.20237 1.24773 1.77850 1.09813 1.07413 1.05269 1.82855 0.98410 1.01050 1.26835 1.48735 1.10221 1.08894 1.39830 1.21568 0.96323 0.83242 0.96444 1.21604 0.99054 0.78749 0.96132 0.90938 1.20919 0.96531 0.94604 0.84312 1.42239 1.40907 1.49108 1.03045 1.19990 1.17019 1.19640 0.86578 0.92192 1.25598 0.97522 0.99808 1.01851 1.70848 1.32289 1.30750 1.25575 0.83229 0.74651 0.75287 0.75725 1.22585 1.22374 1.21620 0.92636 0.93133 0.91952 0.91752 0.91720 0.91160 0.90978 0.89797 0.91074 0.81885 0.81134 0.79491 0.96304 0.93837 0.80474 0.93766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 8.25 37.15 0.31 -1.24 16 2 C -0.10 -1.05 2.76 -90.50 -0.25 -1.30 16 3 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 4 C -0.11 -0.90 5.43 -26.69 -0.14 -1.05 16 5 C -0.14 -0.98 5.74 -26.61 -0.15 -1.13 16 6 C 0.10 0.79 5.30 -3.71 -0.02 0.77 16 7 N -0.60 -7.29 2.41 -166.38 -0.40 -7.69 16 8 C 0.52 7.75 6.94 -12.40 -0.09 7.66 16 9 O -0.43 -8.72 10.94 5.30 0.06 -8.66 16 10 C -0.13 -1.50 5.02 -105.33 -0.53 -2.03 16 11 C -0.03 -0.29 7.34 -39.18 -0.29 -0.58 16 12 C -0.10 -0.88 10.09 -39.47 -0.40 -1.28 16 13 C 0.25 3.14 8.02 -156.27 -1.25 1.89 16 14 N -0.33 -4.84 12.26 31.10 0.38 -4.45 16 15 N -0.01 -0.16 13.35 60.35 0.81 0.64 16 16 N -0.11 -1.67 13.99 60.35 0.84 -0.83 16 17 N -0.30 -4.08 3.92 -12.06 -0.05 -4.12 16 18 C 0.15 1.92 10.85 -16.51 -0.18 1.74 16 19 C 0.15 2.04 2.61 -67.60 -0.18 1.86 16 20 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 21 C 0.16 3.13 3.87 -4.04 -0.02 3.11 16 22 N -0.71 -17.33 3.31 -59.90 -0.20 -17.53 16 23 C -0.30 -8.50 9.80 -15.06 -0.15 -8.65 16 24 H 0.06 1.70 7.83 -52.48 -0.41 1.29 16 25 C -0.05 -1.50 5.50 -17.43 -0.10 -1.60 16 26 N -0.95 -29.46 13.70 55.49 0.76 -28.70 16 27 Si 1.08 26.69 29.92 -169.99 -5.09 21.61 16 28 H -0.30 -7.11 7.11 56.52 0.40 -6.71 16 29 H -0.30 -7.01 7.11 56.52 0.40 -6.61 16 30 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 31 H 0.05 0.60 5.97 -51.93 -0.31 0.29 16 32 H 0.05 0.46 8.14 -51.92 -0.42 0.03 16 33 H 0.06 0.77 6.70 -51.93 -0.35 0.42 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.55 6.33 -51.93 -0.33 0.22 16 37 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.08 0.56 4.44 -51.93 -0.23 0.33 16 39 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.16 1.06 6.92 -52.49 -0.36 0.70 16 41 H 0.17 0.96 8.06 -52.49 -0.42 0.54 16 42 H 0.19 2.20 8.06 -52.49 -0.42 1.78 16 43 H 0.02 0.38 8.06 -51.93 -0.42 -0.04 16 44 H 0.04 0.90 5.26 -51.93 -0.27 0.62 16 45 H 0.36 9.18 6.27 -40.82 -0.26 8.93 16 46 H 0.25 7.69 6.77 -40.82 -0.28 7.41 16 LS Contribution 360.29 15.07 5.43 5.43 Total: -1.00 -35.87 360.29 -6.70 -42.57 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: -5.82 Total: 3.56 kcal Atomic # 6 Polarization: 1.61 SS G_CDS: -3.43 Total: -1.82 kcal Atomic # 7 Polarization: -64.83 SS G_CDS: 2.14 Total: -62.68 kcal Atomic # 8 Polarization: -8.72 SS G_CDS: 0.06 Total: -8.66 kcal Atomic # 14 Polarization: 26.69 SS G_CDS: -5.09 Total: 21.61 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -35.87 -6.70 -42.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667380021.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 217.482 kcal (2) G-P(sol) polarization free energy of solvation -35.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 181.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.566 kcal (6) G-S(sol) free energy of system = (1) + (5) 174.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.73 seconds