Wall clock time and date at job start Wed Apr 1 2020 02:33:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47329 * 2 1 4 4 C 1.53005 * 109.46738 * 119.99589 * 2 1 3 5 5 H 1.09003 * 109.46883 * 185.00069 * 4 2 1 6 6 C 1.53001 * 109.47085 * 304.99833 * 4 2 1 7 7 N 1.46504 * 109.46710 * 175.00341 * 6 4 2 8 8 C 1.34777 * 119.99396 * 179.97438 * 7 6 4 9 9 O 1.21575 * 120.00642 * 0.02562 * 8 7 6 10 10 C 1.47642 * 119.99739 * 179.97438 * 8 7 6 11 11 C 1.39616 * 120.18842 * 305.55907 * 10 8 7 12 12 C 1.37870 * 119.91335 * 179.97438 * 11 10 8 13 13 C 1.38501 * 120.30245 * 359.97438 * 12 11 10 14 14 C 1.38109 * 120.37819 * 0.02562 * 13 12 11 15 15 C 1.38703 * 120.07901 * 359.97438 * 14 13 12 16 16 N 1.39853 * 120.15254 * 179.97438 * 15 14 13 17 17 C 1.35152 * 127.39137 * 353.64850 * 16 15 14 18 18 N 1.30714 * 107.26335 * 179.97438 * 17 16 15 19 19 N 1.28427 * 110.65259 * 0.02562 * 18 17 16 20 20 N 1.28947 * 110.22109 * 359.70080 * 19 18 17 21 21 N 1.46491 * 109.47234 * 64.99887 * 4 2 1 22 22 C 1.36946 * 120.00051 * 84.99673 * 21 4 2 23 23 H 1.07997 * 120.00176 * 0.02562 * 22 21 4 24 24 C 1.38811 * 119.99854 * 180.02562 * 22 21 4 25 25 N 1.31613 * 120.00308 * 359.97438 * 24 22 21 26 26 Si 1.86803 * 119.99625 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.47374 * 89.99833 * 26 24 22 28 28 H 1.48505 * 109.46911 * 210.00236 * 26 24 22 29 29 H 1.48500 * 109.47174 * 329.99337 * 26 24 22 30 30 H 1.09003 * 109.46991 * 300.00783 * 1 2 3 31 31 H 1.08999 * 109.46769 * 60.00164 * 1 2 3 32 32 H 1.08994 * 109.47279 * 180.02562 * 1 2 3 33 33 H 1.08992 * 109.47401 * 239.99391 * 2 1 3 34 34 H 1.09000 * 109.46689 * 179.97438 * 3 2 1 35 35 H 1.09004 * 109.46411 * 299.99391 * 3 2 1 36 36 H 1.08992 * 109.47376 * 59.99376 * 3 2 1 37 37 H 1.08995 * 109.47031 * 55.00025 * 6 4 2 38 38 H 1.09004 * 109.47054 * 294.99960 * 6 4 2 39 39 H 0.96996 * 120.00049 * 359.97438 * 7 6 4 40 40 H 1.08001 * 120.04526 * 359.97438 * 11 10 8 41 41 H 1.07998 * 119.84842 * 180.27131 * 12 11 10 42 42 H 1.08000 * 119.80918 * 180.02562 * 13 12 11 43 43 H 1.08001 * 119.96184 * 179.97438 * 14 13 12 44 44 H 1.07997 * 126.37007 * 0.02562 * 17 16 15 45 45 H 0.97003 * 120.00284 * 264.99910 * 21 4 2 46 46 H 0.97004 * 120.00280 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 1.2494 5 1 3.1263 -0.6443 1.2953 6 6 1.4298 -0.0760 2.4954 7 7 1.8226 -0.8394 3.6825 8 6 1.3994 -0.4532 4.9024 9 8 0.6913 0.5284 5.0177 10 6 1.7947 -1.2228 6.0988 11 6 1.5476 -2.5953 6.1639 12 6 1.9196 -3.3085 7.2836 13 6 2.5385 -2.6698 8.3453 14 6 2.7889 -1.3126 8.2939 15 6 2.4213 -0.5797 7.1751 16 7 2.6736 0.7948 7.1217 17 6 3.1545 1.5800 8.1110 18 7 3.2371 2.7952 7.6363 19 7 2.8409 2.8324 6.4152 20 7 2.4871 1.6553 6.0254 21 7 1.6523 -2.1327 1.1908 22 6 2.4345 -3.0300 0.5137 23 1 3.3372 -2.6972 0.0232 24 6 2.0669 -4.3674 0.4578 25 7 0.9670 -4.7732 1.0559 26 14 3.1342 -5.5915 -0.4652 27 1 4.1440 -6.1646 0.4605 28 1 2.2828 -6.6817 -1.0056 29 1 3.8241 -4.9014 -1.5846 30 1 -0.3633 0.5140 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8934 -0.5139 -0.8898 34 1 3.1301 1.4424 0.0005 35 1 1.6768 1.9562 -0.8901 36 1 1.6767 1.9564 0.8898 37 1 0.3434 -0.0733 2.4081 38 1 1.7896 0.9488 2.5870 39 1 2.3872 -1.6228 3.5905 40 1 1.0656 -3.0978 5.3382 41 1 1.7319 -4.3710 7.3310 42 1 2.8270 -3.2363 9.2183 43 1 3.2715 -0.8212 9.1258 44 1 3.4218 1.2625 9.1080 45 1 0.8416 -2.4318 1.6316 46 1 0.7099 -5.7077 1.0165 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001667520283.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:33:19 Heat of formation + Delta-G solvation = 133.226471 kcal Electronic energy + Delta-G solvation = -30496.113411 eV Core-core repulsion = 26424.533562 eV Total energy + Delta-G solvation = -4071.579850 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.27340 -40.30495 -38.65725 -37.20082 -35.33550 -33.71406 -33.27368 -32.44811 -31.61531 -30.42645 -30.31143 -27.43608 -26.64502 -25.36618 -24.59191 -23.83696 -22.71885 -22.17051 -22.11315 -20.30082 -19.07940 -18.52058 -17.53125 -17.14574 -16.69131 -16.44697 -16.03495 -15.55198 -15.50585 -14.92102 -14.63546 -14.42785 -13.98215 -13.76295 -13.59768 -13.46136 -13.20470 -13.11011 -12.97289 -12.71030 -12.50091 -12.11501 -12.05392 -11.75480 -11.68834 -11.41964 -11.13465 -11.04744 -10.98514 -10.89547 -10.65687 -10.54753 -10.33862 -10.22399 -9.83247 -9.70434 -9.64449 -9.41248 -8.97481 -8.95268 -8.54852 -7.06389 -5.86674 -3.15812 0.07570 0.71035 1.46144 1.62721 2.18975 2.85571 3.26682 3.35656 3.43112 3.43465 3.51585 3.81601 3.97812 4.42541 4.50376 4.58983 4.67645 4.75757 4.92547 5.03065 5.24146 5.28853 5.35182 5.38422 5.45974 5.51664 5.64654 5.76420 5.79564 5.82061 5.86383 5.99720 6.02215 6.11631 6.12187 6.20194 6.37786 6.41132 6.44387 6.48743 6.63113 6.73452 6.88347 7.01261 7.07603 7.62745 7.88421 8.31175 8.32551 8.53111 9.43597 9.98133 10.34597 11.35182 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.010210 B = 0.003760 C = 0.002964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2741.682723 B = 7445.967364 C = 9443.270353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.110 4.110 3 C -0.149 4.149 4 C 0.170 3.830 5 H 0.053 0.947 6 C 0.113 3.887 7 N -0.700 5.700 8 C 0.554 3.446 9 O -0.519 6.519 10 C -0.107 4.107 11 C -0.061 4.061 12 C -0.111 4.111 13 C -0.082 4.082 14 C -0.130 4.130 15 C 0.165 3.835 16 N -0.332 5.332 17 C 0.217 3.783 18 N -0.334 5.334 19 N -0.048 5.048 20 N -0.022 5.022 21 N -0.720 5.720 22 C -0.240 4.240 23 H 0.070 0.930 24 C -0.009 4.009 25 N -0.930 5.930 26 Si 0.903 3.097 27 H -0.291 1.291 28 H -0.292 1.292 29 H -0.283 1.283 30 H 0.047 0.953 31 H 0.039 0.961 32 H 0.064 0.936 33 H 0.074 0.926 34 H 0.049 0.951 35 H 0.046 0.954 36 H 0.052 0.948 37 H 0.070 0.930 38 H 0.068 0.932 39 H 0.409 0.591 40 H 0.151 0.849 41 H 0.141 0.859 42 H 0.141 0.859 43 H 0.138 0.862 44 H 0.237 0.763 45 H 0.385 0.615 46 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.729 4.631 15.988 17.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.132 4.132 3 C -0.206 4.206 4 C 0.060 3.940 5 H 0.071 0.929 6 C -0.011 4.011 7 N -0.352 5.352 8 C 0.338 3.662 9 O -0.395 6.395 10 C -0.113 4.113 11 C -0.080 4.080 12 C -0.130 4.130 13 C -0.101 4.101 14 C -0.151 4.151 15 C 0.071 3.929 16 N -0.123 5.123 17 C -0.081 4.081 18 N -0.181 5.181 19 N -0.043 5.043 20 N -0.007 5.007 21 N -0.361 5.361 22 C -0.371 4.371 23 H 0.088 0.912 24 C -0.205 4.205 25 N -0.579 5.579 26 Si 0.735 3.265 27 H -0.218 1.218 28 H -0.219 1.219 29 H -0.208 1.208 30 H 0.066 0.934 31 H 0.058 0.942 32 H 0.083 0.917 33 H 0.092 0.908 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.071 0.929 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.245 0.755 40 H 0.169 0.831 41 H 0.159 0.841 42 H 0.159 0.841 43 H 0.156 0.844 44 H 0.252 0.748 45 H 0.219 0.781 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 3.225 6.346 14.926 16.537 hybrid contribution 0.540 -2.130 0.125 2.201 sum 3.766 4.216 15.052 16.078 Atomic orbital electron populations 1.21792 0.95822 1.02263 0.99998 1.21718 0.96030 0.94660 1.00816 1.21915 1.00539 0.97134 1.01059 1.20524 0.97158 0.85835 0.90528 0.92940 1.21855 1.00415 0.94852 0.83987 1.45879 1.52101 1.31769 1.05410 1.17807 0.81299 0.84143 0.82983 1.90808 1.36920 1.25761 1.86027 1.19928 1.01452 0.94792 0.95125 1.21498 0.96447 0.91032 0.99045 1.21363 0.97591 1.01111 0.92895 1.21160 0.96806 0.93025 0.99076 1.20783 1.03028 0.94914 0.96360 1.17424 1.01009 0.78141 0.96286 1.49053 1.44240 1.08415 1.10543 1.27381 0.96051 0.87023 0.97597 1.74426 1.21202 1.18063 1.04402 1.78128 1.08028 1.13784 1.04377 1.83213 1.16837 0.94584 1.06058 1.42447 1.28787 1.01211 1.63681 1.19224 1.03515 0.88513 1.25814 0.91187 1.24688 0.97665 0.97093 1.01037 1.69653 1.24460 1.15616 1.48130 0.86252 0.79438 0.81325 0.79508 1.21808 1.21861 1.20823 0.93379 0.94164 0.91652 0.90807 0.93230 0.93519 0.92886 0.91186 0.91350 0.75477 0.83138 0.84123 0.84131 0.84398 0.74751 0.78095 0.93532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.39 8.60 37.16 0.32 -2.07 16 2 C -0.11 -1.90 2.88 -90.62 -0.26 -2.16 16 3 C -0.15 -2.17 8.95 37.16 0.33 -1.84 16 4 C 0.17 3.13 2.22 -67.93 -0.15 2.98 16 5 H 0.05 1.00 8.08 -51.93 -0.42 0.58 16 6 C 0.11 1.96 4.53 -4.04 -0.02 1.94 16 7 N -0.70 -11.80 5.36 -61.31 -0.33 -12.13 16 8 C 0.55 9.42 5.95 -12.42 -0.07 9.35 16 9 O -0.52 -10.42 14.59 5.30 0.08 -10.34 16 10 C -0.11 -1.47 5.65 -104.82 -0.59 -2.06 16 11 C -0.06 -0.70 9.73 -39.20 -0.38 -1.08 16 12 C -0.11 -0.92 10.02 -39.62 -0.40 -1.32 16 13 C -0.08 -0.54 10.03 -39.53 -0.40 -0.93 16 14 C -0.13 -0.97 9.48 -39.46 -0.37 -1.34 16 15 C 0.17 1.95 6.70 -83.30 -0.56 1.39 16 16 N -0.33 -4.42 3.80 -11.53 -0.04 -4.46 16 17 C 0.22 2.24 12.15 -90.10 -1.09 1.14 16 18 N -0.33 -4.70 12.15 29.65 0.36 -4.34 16 19 N -0.05 -0.82 13.39 60.35 0.81 -0.01 16 20 N -0.02 -0.38 9.75 60.35 0.59 0.21 16 21 N -0.72 -15.98 4.01 -53.43 -0.21 -16.20 16 22 C -0.24 -6.03 9.93 -15.06 -0.15 -6.18 16 23 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 24 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 25 N -0.93 -25.77 13.06 55.49 0.72 -25.05 16 26 Si 0.90 21.08 29.55 -169.99 -5.02 16.06 16 27 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 28 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 29 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 30 H 0.05 0.77 6.23 -51.93 -0.32 0.45 16 31 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.06 1.26 7.75 -51.93 -0.40 0.86 16 33 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 34 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.05 0.76 6.68 -51.93 -0.35 0.41 16 37 H 0.07 1.28 6.06 -51.93 -0.31 0.97 16 38 H 0.07 1.19 6.81 -51.93 -0.35 0.83 16 39 H 0.41 6.90 8.09 -40.82 -0.33 6.57 16 40 H 0.15 1.82 8.06 -52.49 -0.42 1.39 16 41 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 42 H 0.14 0.47 8.06 -52.49 -0.42 0.05 16 43 H 0.14 0.51 6.91 -52.49 -0.36 0.15 16 44 H 0.24 0.90 7.23 -52.49 -0.38 0.52 16 45 H 0.38 9.24 7.80 -40.82 -0.32 8.92 16 46 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 383.83 15.07 5.78 5.78 Total: -1.00 -33.08 383.83 -7.22 -40.30 By element: Atomic # 1 Polarization: 18.74 SS G_CDS: -6.06 Total: 12.68 kcal Atomic # 6 Polarization: 1.39 SS G_CDS: -3.89 Total: -2.50 kcal Atomic # 7 Polarization: -63.87 SS G_CDS: 1.89 Total: -61.98 kcal Atomic # 8 Polarization: -10.42 SS G_CDS: 0.08 Total: -10.34 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.08 -7.22 -40.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667520283.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.523 kcal (2) G-P(sol) polarization free energy of solvation -33.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 140.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.297 kcal (6) G-S(sol) free energy of system = (1) + (5) 133.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds