Wall clock time and date at job start Wed Apr 1 2020 03:35:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09002 * 109.49976 * 2 1 4 4 C 1.53043 * 109.52434 * 239.91895 * 2 1 3 5 5 C 1.53037 * 109.53770 * 301.39457 * 4 2 1 6 6 C 1.53181 * 109.31709 * 298.63641 * 5 4 2 7 7 N 1.46959 * 108.88848 * 54.55777 * 6 5 4 8 8 C 1.34779 * 120.65865 * 126.47226 * 7 6 5 9 9 O 1.21518 * 120.00232 * 187.12629 * 8 7 6 10 10 C 1.48128 * 119.99752 * 7.11336 * 8 7 6 11 11 N 1.33474 * 125.32299 * 7.66072 * 10 8 7 12 12 C 1.32502 * 109.75361 * 179.97438 * 11 10 8 13 13 N 1.33984 * 132.34575 * 179.97438 * 12 11 10 14 14 C 1.31258 * 120.88259 * 180.02562 * 13 12 11 15 15 C 1.40177 * 120.35617 * 359.95577 * 14 13 12 16 16 C 1.35679 * 119.27055 * 0.02562 * 15 14 13 17 17 N 1.36173 * 119.02895 * 359.97438 * 16 15 14 18 18 N 1.31992 * 125.32537 * 187.34863 * 10 8 7 19 19 C 1.46926 * 118.71577 * 306.64409 * 7 6 5 20 20 H 1.09004 * 109.58235 * 293.50139 * 19 7 6 21 21 C 1.52995 * 109.58880 * 173.21910 * 19 7 6 22 22 N 1.46503 * 109.47555 * 68.74871 * 21 19 7 23 23 C 1.36935 * 120.00357 * 174.83848 * 22 21 19 24 24 H 1.08004 * 119.99696 * 0.02562 * 23 22 21 25 25 C 1.38807 * 120.00175 * 180.26938 * 23 22 21 26 26 N 1.31619 * 119.99962 * 359.72856 * 25 23 22 27 27 Si 1.86800 * 120.00263 * 179.72251 * 25 23 22 28 28 H 1.48500 * 109.46716 * 90.00277 * 27 25 23 29 29 H 1.48498 * 109.46971 * 210.00446 * 27 25 23 30 30 H 1.48506 * 109.46956 * 330.00370 * 27 25 23 31 31 H 1.08996 * 109.47189 * 299.93547 * 1 2 3 32 32 H 1.08999 * 109.47333 * 59.93668 * 1 2 3 33 33 H 1.08999 * 109.47392 * 179.97438 * 1 2 3 34 34 H 1.08996 * 109.46186 * 61.42040 * 4 2 1 35 35 H 1.09007 * 109.46081 * 181.37988 * 4 2 1 36 36 H 1.09004 * 109.49579 * 58.59197 * 5 4 2 37 37 H 1.09004 * 109.49349 * 178.67958 * 5 4 2 38 38 H 1.09003 * 109.58639 * 174.42083 * 6 5 4 39 39 H 1.08999 * 109.58797 * 294.70130 * 6 5 4 40 40 H 1.07998 * 119.82463 * 179.97438 * 14 13 12 41 41 H 1.07998 * 120.36316 * 179.97438 * 15 14 13 42 42 H 1.07993 * 120.48841 * 179.97438 * 16 15 14 43 43 H 1.09000 * 109.46972 * 308.74336 * 21 19 7 44 44 H 1.09005 * 109.47088 * 188.74931 * 21 19 7 45 45 H 0.97004 * 119.99709 * 354.83042 * 22 21 19 46 46 H 0.96998 * 120.00107 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0414 -0.7230 -1.2482 5 6 1.5043 -2.1559 -1.2658 6 6 2.0153 -2.9038 -0.0304 7 7 1.6549 -2.1389 1.1716 8 6 0.9801 -2.7233 2.1814 9 8 0.5751 -2.0523 3.1100 10 6 0.7319 -4.1834 2.1590 11 7 1.2470 -5.0403 1.2747 12 6 0.8231 -6.2672 1.5407 13 7 1.0538 -7.4490 0.9532 14 6 0.5050 -8.5489 1.4136 15 6 -0.3357 -8.5056 2.5344 16 6 -0.5762 -7.3143 3.1377 17 7 0.0074 -6.1904 2.6372 18 7 -0.0287 -4.8415 3.0138 19 6 2.0412 -0.7235 1.2498 20 1 3.1271 -0.6434 1.2999 21 6 1.4222 -0.0911 2.4978 22 7 2.0565 -0.6499 3.6944 23 6 1.7386 -0.1566 4.9316 24 1 1.0200 0.6442 5.0254 25 6 2.3438 -0.6823 6.0648 26 7 3.2191 -1.6586 5.9506 27 14 1.9161 -0.0041 7.7520 28 1 0.7706 -0.7633 8.3147 29 1 3.0896 -0.1393 8.6519 30 1 1.5480 1.4295 7.6305 31 1 -0.3633 0.5128 0.8905 32 1 -0.3634 0.5148 -0.8894 33 1 -0.3634 -1.0276 -0.0005 34 1 1.6994 -0.1960 -2.1388 35 1 3.1312 -0.7438 -1.2348 36 1 0.4146 -2.1361 -1.2542 37 1 1.8499 -2.6628 -2.1668 38 1 1.5571 -3.8918 0.0140 39 1 3.0990 -3.0058 -0.0873 40 1 0.7024 -9.4923 0.9264 41 1 -0.7877 -9.4104 2.9131 42 1 -1.2210 -7.2582 4.0022 43 1 0.3532 -0.3032 2.5205 44 1 1.5781 0.9875 2.4741 45 1 2.7015 -1.3695 3.6102 46 1 3.6423 -2.0257 6.7425 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698946913.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:35:08 Heat of formation + Delta-G solvation = 179.138162 kcal Electronic energy + Delta-G solvation = -31536.080166 eV Core-core repulsion = 27466.491197 eV Total energy + Delta-G solvation = -4069.588969 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.94359 -40.31947 -38.79302 -37.14417 -34.86342 -34.35722 -33.21144 -32.03752 -31.36887 -30.71143 -30.08321 -27.27752 -26.09209 -25.40073 -24.53980 -23.99759 -22.89252 -22.55015 -21.09083 -19.95537 -18.71926 -18.30298 -17.95488 -17.16871 -16.71012 -16.54043 -15.92801 -15.45943 -15.04224 -14.75762 -14.61933 -14.24966 -13.96347 -13.81591 -13.47720 -13.45747 -13.13515 -12.99807 -12.75624 -12.62712 -12.42626 -12.24406 -12.10402 -11.90644 -11.44651 -11.27488 -10.93998 -10.81671 -10.70664 -10.57421 -10.40469 -10.22969 -10.16931 -9.85672 -9.78709 -9.52911 -9.51723 -8.92822 -8.81973 -8.51567 -8.00578 -6.54578 -5.58464 -2.75028 0.18161 0.52388 1.72038 2.01091 2.97759 3.14524 3.31904 3.54640 3.59093 3.60396 3.83542 4.00723 4.05440 4.45677 4.61958 4.73852 4.85917 4.98165 5.03696 5.05717 5.10785 5.30521 5.51433 5.55709 5.66449 5.75527 5.78336 5.81795 5.88011 5.92097 5.97204 6.03566 6.05736 6.08137 6.12292 6.24009 6.33633 6.39115 6.54456 6.55872 6.62996 6.77279 6.99148 7.24416 7.33970 7.68751 7.85959 7.96042 8.59120 8.79524 9.70072 10.28995 10.62712 11.64815 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.008367 B = 0.004853 C = 0.003293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3345.489299 B = 5768.735624 C = 8500.500887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.098 4.098 3 H 0.080 0.920 4 C -0.113 4.113 5 C -0.134 4.134 6 C 0.082 3.918 7 N -0.590 5.590 8 C 0.555 3.445 9 O -0.412 6.412 10 C 0.260 3.740 11 N -0.500 5.500 12 C 0.432 3.568 13 N -0.454 5.454 14 C 0.205 3.795 15 C -0.231 4.231 16 C 0.177 3.823 17 N -0.330 5.330 18 N -0.267 5.267 19 C 0.149 3.851 20 H 0.073 0.927 21 C 0.153 3.847 22 N -0.691 5.691 23 C -0.207 4.207 24 H 0.068 0.932 25 C -0.020 4.020 26 N -0.933 5.933 27 Si 0.904 3.096 28 H -0.293 1.293 29 H -0.294 1.294 30 H -0.283 1.283 31 H 0.061 0.939 32 H 0.047 0.953 33 H 0.056 0.944 34 H 0.060 0.940 35 H 0.062 0.938 36 H 0.064 0.936 37 H 0.068 0.932 38 H 0.134 0.866 39 H 0.060 0.940 40 H 0.189 0.811 41 H 0.173 0.827 42 H 0.183 0.817 43 H 0.049 0.951 44 H 0.020 0.980 45 H 0.380 0.620 46 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.151 -13.588 -15.877 22.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.118 4.118 3 H 0.098 0.902 4 C -0.151 4.151 5 C -0.172 4.172 6 C -0.041 4.041 7 N -0.328 5.328 8 C 0.335 3.665 9 O -0.274 6.274 10 C -0.023 4.023 11 N -0.235 5.235 12 C 0.072 3.928 13 N -0.169 5.169 14 C 0.018 3.982 15 C -0.256 4.256 16 C 0.040 3.960 17 N -0.110 5.110 18 N -0.100 5.100 19 C 0.046 3.954 20 H 0.091 0.909 21 C 0.025 3.975 22 N -0.334 5.334 23 C -0.340 4.340 24 H 0.086 0.914 25 C -0.215 4.215 26 N -0.583 5.583 27 Si 0.736 3.264 28 H -0.220 1.220 29 H -0.221 1.221 30 H -0.209 1.209 31 H 0.080 0.920 32 H 0.066 0.934 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.086 0.914 38 H 0.150 0.850 39 H 0.078 0.922 40 H 0.206 0.794 41 H 0.191 0.809 42 H 0.200 0.800 43 H 0.067 0.933 44 H 0.038 0.962 45 H 0.214 0.786 46 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -6.988 -12.187 -15.569 20.971 hybrid contribution -0.386 -0.523 1.656 1.779 sum -7.374 -12.711 -13.913 20.236 Atomic orbital electron populations 1.21861 0.94962 1.02019 1.01376 1.21453 0.96651 0.99309 0.94392 0.90151 1.21556 1.00482 0.95773 0.97303 1.21957 1.01232 0.95952 0.98070 1.22524 1.00812 0.97862 0.82889 1.47382 1.57079 1.10765 1.17569 1.16464 0.84355 0.81675 0.84024 1.91224 1.44299 1.59183 1.32737 1.24879 0.91832 0.97298 0.88297 1.70821 1.29071 0.95962 1.27633 1.23026 0.90475 0.93974 0.85292 1.68055 1.24232 0.95192 1.29383 1.23572 0.87538 0.96350 0.90779 1.21915 1.05416 0.97995 1.00317 1.22222 0.93530 0.82442 0.97840 1.49118 1.31843 1.07890 1.22138 1.79096 1.26340 0.82925 1.21677 1.21567 0.98964 0.79010 0.95884 0.90922 1.21094 0.97578 0.94171 0.84613 1.42416 1.48138 1.41750 1.01085 1.19203 1.17867 1.12792 0.84092 0.91371 1.24656 1.00151 0.99192 0.97538 1.69669 1.31813 1.28869 1.27942 0.86204 0.77080 0.78193 0.84904 1.22046 1.22073 1.20884 0.91969 0.93367 0.92540 0.92168 0.91893 0.91694 0.91353 0.84970 0.92162 0.79409 0.80939 0.79986 0.93329 0.96217 0.78648 0.93917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 8.22 37.15 0.31 -1.70 16 2 C -0.10 -1.36 2.80 -90.50 -0.25 -1.61 16 3 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 4 C -0.11 -1.33 5.43 -26.69 -0.14 -1.48 16 5 C -0.13 -1.63 5.74 -26.62 -0.15 -1.78 16 6 C 0.08 1.24 6.07 -3.70 -0.02 1.22 16 7 N -0.59 -10.75 2.43 -166.20 -0.40 -11.16 16 8 C 0.56 12.04 7.04 -12.20 -0.09 11.95 16 9 O -0.41 -10.54 10.89 5.35 0.06 -10.48 16 10 C 0.26 5.29 7.63 -156.78 -1.20 4.10 16 11 N -0.50 -9.06 7.64 -12.23 -0.09 -9.15 16 12 C 0.43 6.87 8.99 -323.04 -2.90 3.97 16 13 N -0.45 -5.62 10.48 -13.79 -0.14 -5.77 16 14 C 0.20 1.40 11.27 -17.07 -0.19 1.21 16 15 C -0.23 -1.27 10.06 -39.77 -0.40 -1.67 16 16 C 0.18 1.66 11.32 -16.54 -0.19 1.47 16 17 N -0.33 -5.06 3.91 -13.80 -0.05 -5.11 16 18 N -0.27 -5.36 12.78 32.02 0.41 -4.95 16 19 C 0.15 2.66 2.63 -67.60 -0.18 2.48 16 20 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 21 C 0.15 3.35 4.07 -4.04 -0.02 3.34 16 22 N -0.69 -18.89 3.23 -59.91 -0.19 -19.08 16 23 C -0.21 -6.22 9.72 -15.06 -0.15 -6.37 16 24 H 0.07 2.00 7.83 -52.48 -0.41 1.59 16 25 C -0.02 -0.62 5.50 -17.43 -0.10 -0.72 16 26 N -0.93 -30.16 13.06 55.49 0.72 -29.44 16 27 Si 0.90 23.99 29.55 -169.99 -5.02 18.96 16 28 H -0.29 -7.81 7.11 56.52 0.40 -7.41 16 29 H -0.29 -7.79 7.11 56.52 0.40 -7.39 16 30 H -0.28 -7.24 7.11 56.52 0.40 -6.84 16 31 H 0.06 0.94 6.55 -51.93 -0.34 0.60 16 32 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.84 5.98 -51.93 -0.31 0.53 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.06 0.82 6.34 -51.93 -0.33 0.49 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.13 2.14 4.14 -62.38 -0.26 1.88 16 39 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.19 0.38 8.06 -52.49 -0.42 -0.04 16 41 H 0.17 0.17 8.06 -52.49 -0.42 -0.26 16 42 H 0.18 1.17 8.06 -52.49 -0.42 0.75 16 43 H 0.05 1.14 5.05 -51.93 -0.26 0.88 16 44 H 0.02 0.43 8.13 -51.93 -0.42 0.01 16 45 H 0.38 11.17 7.01 -40.82 -0.29 10.88 16 46 H 0.25 7.87 8.31 -40.82 -0.34 7.53 16 LS Contribution 362.27 15.07 5.46 5.46 Total: -1.00 -39.28 362.27 -10.91 -50.20 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: -5.98 Total: 6.13 kcal Atomic # 6 Polarization: 20.07 SS G_CDS: -5.67 Total: 14.40 kcal Atomic # 7 Polarization: -84.91 SS G_CDS: 0.24 Total: -84.67 kcal Atomic # 8 Polarization: -10.54 SS G_CDS: 0.06 Total: -10.48 kcal Atomic # 14 Polarization: 23.99 SS G_CDS: -5.02 Total: 18.96 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -39.28 -10.91 -50.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698946913.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 229.334 kcal (2) G-P(sol) polarization free energy of solvation -39.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 190.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.196 kcal (6) G-S(sol) free energy of system = (1) + (5) 179.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds