Wall clock time and date at job start Wed Apr 1 2020 02:28:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46838 * 2 1 4 4 C 1.53002 * 109.47205 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.47205 * 180.02562 * 4 3 2 6 6 H 1.08990 * 109.47497 * 305.00427 * 5 4 3 7 7 C 1.53003 * 109.46790 * 185.00077 * 5 4 3 8 8 N 1.46499 * 109.46708 * 185.00148 * 7 5 4 9 9 C 1.36935 * 119.99926 * 180.02562 * 8 7 5 10 10 H 1.08005 * 119.99877 * 359.97438 * 9 8 7 11 11 C 1.38811 * 120.00369 * 179.73019 * 9 8 7 12 12 N 1.31617 * 119.99773 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00451 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47154 * 89.99247 * 13 11 9 15 15 H 1.48496 * 109.47375 * 209.99772 * 13 11 9 16 16 H 1.48502 * 109.46736 * 329.99467 * 13 11 9 17 17 N 1.46501 * 109.46646 * 65.00808 * 5 4 3 18 18 C 1.34781 * 119.99698 * 274.99553 * 17 5 4 19 19 O 1.21601 * 119.99842 * 0.02562 * 18 17 5 20 20 C 1.47434 * 119.99717 * 180.02562 * 18 17 5 21 21 C 1.41290 * 126.41601 * 359.68584 * 20 18 17 22 22 N 1.30445 * 108.02114 * 179.85500 * 21 20 18 23 23 N 1.39941 * 108.89642 * 0.41086 * 22 21 20 24 24 C 1.46496 * 125.75194 * 179.73819 * 23 22 21 25 25 C 1.34253 * 108.48986 * 359.73279 * 23 22 21 26 26 C 1.50701 * 126.28885 * 179.97438 * 25 23 22 27 27 F 1.39906 * 109.47095 * 30.02779 * 26 25 23 28 28 F 1.39898 * 109.47104 * 150.02399 * 26 25 23 29 29 H 1.08995 * 109.47384 * 59.99645 * 1 2 3 30 30 H 1.08997 * 109.46964 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.47191 * 299.99503 * 1 2 3 32 32 H 1.08996 * 109.46722 * 240.00836 * 2 1 3 33 33 H 1.08995 * 109.47384 * 120.00355 * 2 1 3 34 34 H 1.09003 * 109.47152 * 60.00674 * 3 2 1 35 35 H 1.08999 * 109.47830 * 300.00596 * 3 2 1 36 36 H 1.09003 * 109.46477 * 60.00307 * 4 3 2 37 37 H 1.08999 * 109.47251 * 300.00997 * 4 3 2 38 38 H 1.08998 * 109.46692 * 65.00650 * 7 5 4 39 39 H 1.08994 * 109.47584 * 305.00514 * 7 5 4 40 40 H 0.97005 * 120.00261 * 0.02562 * 8 7 5 41 41 H 0.97004 * 120.00382 * 180.02562 * 12 11 9 42 42 H 0.97002 * 120.00468 * 95.00180 * 17 5 4 43 43 H 1.08003 * 125.98723 * 359.97438 * 21 20 18 44 44 H 1.09001 * 109.47061 * 269.99816 * 24 23 22 45 45 H 1.09002 * 109.47243 * 29.99540 * 24 23 22 46 46 H 1.08997 * 109.47591 * 149.99854 * 24 23 22 47 47 H 1.09000 * 109.47330 * 270.03172 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0799 2.8851 0.0013 6 1 3.6456 3.4244 -0.8404 7 6 5.6048 2.8870 -0.1238 8 7 6.1029 4.2594 -0.0034 9 6 7.4467 4.5097 -0.0849 10 1 8.1394 3.6953 -0.2376 11 6 7.9183 5.8108 0.0236 12 7 7.0737 6.8039 0.2043 13 14 9.7514 6.1523 -0.0884 14 1 10.1232 6.3995 -1.5046 15 1 10.0827 7.3486 0.7265 16 1 10.5054 4.9800 0.4240 17 7 3.6919 3.5396 1.2533 18 6 2.4745 4.1064 1.3682 19 8 1.6981 4.0742 0.4328 20 6 2.0842 4.7655 2.6279 21 6 2.8719 4.8764 3.7956 22 7 2.1799 5.5280 4.6889 23 7 0.9311 5.8522 4.1468 24 6 -0.1382 6.5793 4.8352 25 6 0.8784 5.3846 2.8894 26 6 -0.2838 5.5116 1.9385 27 9 -0.9899 6.6863 2.2194 28 9 0.1922 5.5568 0.6238 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8901 32 1 1.8933 -0.5137 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 1.6767 1.9563 0.8901 35 1 1.6766 1.9565 -0.8899 36 1 3.9336 0.9287 -0.8892 37 1 3.9330 0.9288 0.8908 38 1 5.8902 2.4807 -1.0942 39 1 6.0351 2.2735 0.6677 40 1 5.4808 4.9909 0.1341 41 1 7.4031 7.7132 0.2798 42 1 4.3111 3.5650 1.9995 43 1 3.8725 4.4909 3.9251 44 1 -0.7848 5.8705 5.3527 45 1 0.2981 7.2681 5.5586 46 1 -0.7237 7.1402 4.1068 47 1 -0.9451 4.6533 2.0563 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700523157.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:28:40 Heat of formation + Delta-G solvation = -54.254940 kcal Electronic energy + Delta-G solvation = -31668.131256 eV Core-core repulsion = 27137.732416 eV Total energy + Delta-G solvation = -4530.398840 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.176 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.16585 -47.07382 -41.54592 -39.30756 -36.37401 -34.87239 -33.81876 -33.33540 -31.59774 -31.10982 -30.27547 -27.73719 -26.86175 -26.23989 -24.15454 -22.85674 -22.20275 -21.24682 -20.68717 -20.21436 -19.83656 -18.18404 -17.74837 -17.19993 -16.97561 -16.47221 -15.94903 -15.74985 -15.29168 -14.96549 -14.66017 -14.60002 -14.41687 -13.84678 -13.82775 -13.77734 -13.42127 -13.32139 -13.18015 -12.89005 -12.80989 -12.68042 -12.54759 -12.46795 -12.00161 -11.84951 -11.63260 -11.26691 -11.04527 -11.02749 -10.88857 -10.80368 -10.74538 -10.32514 -10.25516 -9.97572 -9.77414 -9.69744 -9.42952 -8.89256 -8.84898 -8.46833 -6.92991 -5.75098 -3.05008 1.13037 2.00602 2.13016 3.30617 3.44115 3.49197 3.51061 3.55272 3.69809 3.85803 4.22580 4.51054 4.58500 4.64867 4.83264 4.89184 4.92509 5.06645 5.09588 5.17096 5.22885 5.30760 5.45464 5.51248 5.52788 5.58105 5.68537 5.87899 5.91729 6.00145 6.01989 6.08794 6.21063 6.22596 6.26253 6.36821 6.43624 6.51994 6.53996 6.69575 6.77220 7.04790 7.29593 7.70345 7.97731 8.42422 8.66870 9.54380 10.11083 10.46374 11.46893 Molecular weight = 344.18amu Principal moments of inertia in cm(-1) A = 0.008323 B = 0.003995 C = 0.003009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3363.212243 B = 7006.421702 C = 9302.099543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.126 4.126 3 C -0.111 4.111 4 C -0.126 4.126 5 C 0.141 3.859 6 H 0.089 0.911 7 C 0.144 3.856 8 N -0.731 5.731 9 C -0.243 4.243 10 H 0.070 0.930 11 C -0.011 4.011 12 N -0.929 5.929 13 Si 0.906 3.094 14 H -0.290 1.290 15 H -0.292 1.292 16 H -0.282 1.282 17 N -0.703 5.703 18 C 0.586 3.414 19 O -0.530 6.530 20 C -0.239 4.239 21 C 0.086 3.914 22 N -0.279 5.279 23 N -0.342 5.342 24 C 0.079 3.921 25 C 0.056 3.944 26 C 0.343 3.657 27 F -0.202 7.202 28 F -0.147 7.147 29 H 0.053 0.947 30 H 0.047 0.953 31 H 0.050 0.950 32 H 0.056 0.944 33 H 0.054 0.946 34 H 0.064 0.936 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.061 0.939 38 H 0.033 0.967 39 H 0.024 0.976 40 H 0.387 0.613 41 H 0.255 0.745 42 H 0.401 0.599 43 H 0.199 0.801 44 H 0.081 0.919 45 H 0.096 0.904 46 H 0.106 0.894 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.530 -8.270 8.041 21.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.163 4.163 3 C -0.149 4.149 4 C -0.165 4.165 5 C 0.037 3.963 6 H 0.107 0.893 7 C 0.016 3.984 8 N -0.376 5.376 9 C -0.374 4.374 10 H 0.088 0.912 11 C -0.207 4.207 12 N -0.577 5.577 13 Si 0.737 3.263 14 H -0.218 1.218 15 H -0.218 1.218 16 H -0.208 1.208 17 N -0.353 5.353 18 C 0.372 3.628 19 O -0.407 6.407 20 C -0.254 4.254 21 C -0.100 4.100 22 N -0.099 5.099 23 N -0.122 5.122 24 C -0.062 4.062 25 C -0.078 4.078 26 C 0.287 3.713 27 F -0.184 7.184 28 F -0.127 7.127 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.080 0.920 38 H 0.050 0.950 39 H 0.041 0.959 40 H 0.221 0.779 41 H 0.065 0.935 42 H 0.236 0.764 43 H 0.215 0.785 44 H 0.099 0.901 45 H 0.115 0.885 46 H 0.124 0.876 47 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -19.016 -7.727 8.597 22.254 hybrid contribution 1.320 0.437 -0.363 1.437 sum -17.696 -7.290 8.234 20.835 Atomic orbital electron populations 1.21737 0.96375 1.00746 1.01761 1.21577 0.95521 0.97928 1.01291 1.21666 0.94806 0.95116 1.03291 1.21974 0.96095 0.96361 1.02069 1.21283 0.95899 0.92331 0.86826 0.89329 1.20965 0.89363 0.89347 0.98717 1.42359 1.05382 1.02078 1.87788 1.19206 0.83693 0.92414 1.42089 0.91191 1.24739 0.97551 0.95676 1.02755 1.69673 1.32811 0.98922 1.56332 0.86216 0.85257 0.77376 0.77467 1.21753 1.21840 1.20770 1.45693 1.15552 1.57045 1.17047 1.17057 0.82255 0.77858 0.85677 1.90842 1.51287 1.59226 1.39382 1.20207 0.94587 1.12746 0.97887 1.24186 0.99913 0.95968 0.89928 1.77262 0.90737 1.19498 1.22420 1.48254 1.13063 1.42123 1.08782 1.22373 0.87415 0.97003 0.99365 1.21909 0.97748 0.99989 0.88123 1.19668 0.86860 0.86066 0.78702 1.92912 1.79700 1.52472 1.93272 1.93266 1.88774 1.96515 1.34189 0.92767 0.93427 0.93110 0.92474 0.92696 0.91746 0.91418 0.91240 0.92043 0.94970 0.95862 0.77898 0.93526 0.76446 0.78469 0.90080 0.88493 0.87559 0.85261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.91 37.16 0.37 -1.13 16 2 C -0.13 -1.37 5.93 -26.73 -0.16 -1.53 16 3 C -0.11 -1.45 3.82 -26.73 -0.10 -1.55 16 4 C -0.13 -1.66 4.89 -26.73 -0.13 -1.79 16 5 C 0.14 2.29 2.42 -67.93 -0.16 2.13 16 6 H 0.09 1.65 7.58 -51.93 -0.39 1.26 16 7 C 0.14 2.74 5.82 -4.04 -0.02 2.72 16 8 N -0.73 -17.93 5.43 -59.91 -0.33 -18.26 16 9 C -0.24 -6.66 9.99 -15.06 -0.15 -6.81 16 10 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 11 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 12 N -0.93 -28.09 13.06 55.49 0.72 -27.36 16 13 Si 0.91 22.29 29.55 -169.99 -5.02 17.26 16 14 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 15 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 16 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 17 N -0.70 -10.99 4.46 -54.88 -0.24 -11.23 16 18 C 0.59 9.48 6.33 -12.51 -0.08 9.40 16 19 O -0.53 -9.41 10.31 5.28 0.05 -9.36 16 20 C -0.24 -3.52 6.09 -105.07 -0.64 -4.16 16 21 C 0.09 1.18 11.50 -16.98 -0.20 0.99 16 22 N -0.28 -3.89 12.50 30.86 0.39 -3.50 16 23 N -0.34 -4.15 3.98 -63.34 -0.25 -4.41 16 24 C 0.08 0.60 11.16 59.84 0.67 1.27 16 25 C 0.06 0.73 6.74 -81.61 -0.55 0.18 16 26 C 0.34 3.94 5.53 36.01 0.20 4.14 16 27 F -0.20 -2.17 14.55 2.25 0.03 -2.14 16 28 F -0.15 -2.30 13.52 2.25 0.03 -2.27 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.92 5.64 -51.93 -0.29 0.62 16 35 H 0.07 1.00 7.84 -51.93 -0.41 0.59 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.39 10.23 7.33 -40.82 -0.30 9.93 16 41 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 42 H 0.40 5.96 7.56 -40.82 -0.31 5.65 16 43 H 0.20 2.25 7.50 -52.48 -0.39 1.86 16 44 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 45 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.11 0.74 5.52 -51.93 -0.29 0.45 16 47 H 0.13 1.02 8.14 -51.93 -0.42 0.59 16 LS Contribution 387.14 15.07 5.83 5.83 Total: -1.00 -33.71 387.14 -6.84 -40.55 By element: Atomic # 1 Polarization: 18.40 SS G_CDS: -7.00 Total: 11.40 kcal Atomic # 6 Polarization: 4.52 SS G_CDS: -1.05 Total: 3.47 kcal Atomic # 7 Polarization: -65.04 SS G_CDS: 0.29 Total: -64.76 kcal Atomic # 8 Polarization: -9.41 SS G_CDS: 0.05 Total: -9.36 kcal Atomic # 9 Polarization: -4.47 SS G_CDS: 0.06 Total: -4.40 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.71 -6.84 -40.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700523157.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.704 kcal (2) G-P(sol) polarization free energy of solvation -33.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds