Wall clock time and date at job start Wed Apr 1 2020 02:28:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46838 * 2 1 4 4 C 1.53002 * 109.47205 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.47205 * 180.02562 * 4 3 2 6 6 H 1.08990 * 109.47497 * 305.00427 * 5 4 3 7 7 C 1.53003 * 109.46790 * 185.00077 * 5 4 3 8 8 N 1.46499 * 109.46708 * 185.00148 * 7 5 4 9 9 C 1.36935 * 119.99926 * 180.02562 * 8 7 5 10 10 H 1.08005 * 119.99877 * 359.97438 * 9 8 7 11 11 C 1.38811 * 120.00369 * 179.73019 * 9 8 7 12 12 N 1.31617 * 119.99773 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00451 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47154 * 89.99247 * 13 11 9 15 15 H 1.48496 * 109.47375 * 209.99772 * 13 11 9 16 16 H 1.48502 * 109.46736 * 329.99467 * 13 11 9 17 17 N 1.46501 * 109.46646 * 65.00808 * 5 4 3 18 18 C 1.34781 * 119.99698 * 274.99553 * 17 5 4 19 19 O 1.21601 * 119.99842 * 0.02562 * 18 17 5 20 20 C 1.47434 * 119.99717 * 180.02562 * 18 17 5 21 21 C 1.41290 * 126.41601 * 359.68584 * 20 18 17 22 22 N 1.30445 * 108.02114 * 179.85500 * 21 20 18 23 23 N 1.39941 * 108.89642 * 0.41086 * 22 21 20 24 24 C 1.46496 * 125.75194 * 179.73819 * 23 22 21 25 25 C 1.34253 * 108.48986 * 359.73279 * 23 22 21 26 26 C 1.50701 * 126.28885 * 179.97438 * 25 23 22 27 27 F 1.39906 * 109.47095 * 30.02779 * 26 25 23 28 28 F 1.39898 * 109.47104 * 150.02399 * 26 25 23 29 29 H 1.08995 * 109.47384 * 59.99645 * 1 2 3 30 30 H 1.08997 * 109.46964 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.47191 * 299.99503 * 1 2 3 32 32 H 1.08996 * 109.46722 * 240.00836 * 2 1 3 33 33 H 1.08995 * 109.47384 * 120.00355 * 2 1 3 34 34 H 1.09003 * 109.47152 * 60.00674 * 3 2 1 35 35 H 1.08999 * 109.47830 * 300.00596 * 3 2 1 36 36 H 1.09003 * 109.46477 * 60.00307 * 4 3 2 37 37 H 1.08999 * 109.47251 * 300.00997 * 4 3 2 38 38 H 1.08998 * 109.46692 * 65.00650 * 7 5 4 39 39 H 1.08994 * 109.47584 * 305.00514 * 7 5 4 40 40 H 0.97005 * 120.00261 * 0.02562 * 8 7 5 41 41 H 0.97004 * 120.00382 * 180.02562 * 12 11 9 42 42 H 0.97002 * 120.00468 * 95.00180 * 17 5 4 43 43 H 1.08003 * 125.98723 * 359.97438 * 21 20 18 44 44 H 1.09001 * 109.47061 * 269.99816 * 24 23 22 45 45 H 1.09002 * 109.47243 * 29.99540 * 24 23 22 46 46 H 1.08997 * 109.47591 * 149.99854 * 24 23 22 47 47 H 1.09000 * 109.47330 * 270.03172 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0799 2.8851 0.0013 6 1 3.6456 3.4244 -0.8404 7 6 5.6048 2.8870 -0.1238 8 7 6.1029 4.2594 -0.0034 9 6 7.4467 4.5097 -0.0849 10 1 8.1394 3.6953 -0.2376 11 6 7.9183 5.8108 0.0236 12 7 7.0737 6.8039 0.2043 13 14 9.7514 6.1523 -0.0884 14 1 10.1232 6.3995 -1.5046 15 1 10.0827 7.3486 0.7265 16 1 10.5054 4.9800 0.4240 17 7 3.6919 3.5396 1.2533 18 6 2.4745 4.1064 1.3682 19 8 1.6981 4.0742 0.4328 20 6 2.0842 4.7655 2.6279 21 6 2.8719 4.8764 3.7956 22 7 2.1799 5.5280 4.6889 23 7 0.9311 5.8522 4.1468 24 6 -0.1382 6.5793 4.8352 25 6 0.8784 5.3846 2.8894 26 6 -0.2838 5.5116 1.9385 27 9 -0.9899 6.6863 2.2194 28 9 0.1922 5.5568 0.6238 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8901 32 1 1.8933 -0.5137 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 1.6767 1.9563 0.8901 35 1 1.6766 1.9565 -0.8899 36 1 3.9336 0.9287 -0.8892 37 1 3.9330 0.9288 0.8908 38 1 5.8902 2.4807 -1.0942 39 1 6.0351 2.2735 0.6677 40 1 5.4808 4.9909 0.1341 41 1 7.4031 7.7132 0.2798 42 1 4.3111 3.5650 1.9995 43 1 3.8725 4.4909 3.9251 44 1 -0.7848 5.8705 5.3527 45 1 0.2981 7.2681 5.5586 46 1 -0.7237 7.1402 4.1068 47 1 -0.9451 4.6533 2.0563 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700523157.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:28:39 Heat of formation + Delta-G solvation = -76.450895 kcal Electronic energy + Delta-G solvation = -31669.093745 eV Core-core repulsion = 27137.732416 eV Total energy + Delta-G solvation = -4531.361329 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.176 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.11110 -48.08419 -42.56468 -40.55866 -37.72528 -36.20173 -35.10074 -34.55536 -32.96597 -32.46280 -31.58026 -28.88415 -28.08908 -27.13971 -25.81080 -23.95813 -23.69983 -22.32395 -21.72897 -21.38371 -21.01186 -19.40077 -18.91792 -18.65757 -18.08256 -17.62006 -17.14560 -16.74957 -16.61939 -16.18696 -16.00303 -15.70846 -15.44851 -15.25880 -15.11926 -14.87947 -14.79904 -14.47118 -14.38721 -14.09043 -13.90090 -13.80212 -13.51528 -13.39642 -13.21205 -13.09269 -12.82377 -12.76964 -12.62281 -12.43408 -12.09814 -12.02992 -11.93660 -11.80961 -11.76984 -11.33193 -11.26956 -10.95154 -10.73798 -10.66596 -9.95051 -9.68654 -8.96989 -7.91069 -5.20238 0.10052 1.04350 1.12528 1.49375 1.50718 1.59009 2.30195 2.40215 2.54239 2.58576 2.99883 3.31157 3.43422 3.55742 3.70736 3.79581 3.92430 4.10286 4.15544 4.17250 4.29780 4.31488 4.37175 4.40232 4.43735 4.57736 4.61908 4.63457 4.70721 4.92924 4.98200 5.02419 5.06795 5.16603 5.20182 5.21510 5.31272 5.40396 5.50880 5.54292 5.55064 5.66936 5.75873 6.27512 6.29143 6.73302 7.36841 7.42824 8.12161 8.35219 9.31771 Molecular weight = 344.18amu Principal moments of inertia in cm(-1) A = 0.008323 B = 0.003995 C = 0.003009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3363.212243 B = 7006.421702 C = 9302.099543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.122 4.122 3 C -0.103 4.103 4 C -0.116 4.116 5 C 0.152 3.848 6 H 0.059 0.941 7 C 0.145 3.855 8 N -0.743 5.743 9 C -0.241 4.241 10 H 0.080 0.920 11 C -0.073 4.073 12 N -0.969 5.969 13 Si 0.970 3.030 14 H -0.291 1.291 15 H -0.299 1.299 16 H -0.266 1.266 17 N -0.702 5.702 18 C 0.583 3.417 19 O -0.550 6.550 20 C -0.267 4.267 21 C 0.083 3.917 22 N -0.297 5.297 23 N -0.335 5.335 24 C 0.068 3.932 25 C 0.057 3.943 26 C 0.341 3.659 27 F -0.197 7.197 28 F -0.174 7.174 29 H 0.047 0.953 30 H 0.063 0.937 31 H 0.048 0.952 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.051 0.949 35 H 0.045 0.955 36 H 0.081 0.919 37 H 0.076 0.924 38 H 0.036 0.964 39 H 0.041 0.959 40 H 0.374 0.626 41 H 0.248 0.752 42 H 0.404 0.596 43 H 0.211 0.789 44 H 0.110 0.890 45 H 0.105 0.895 46 H 0.114 0.886 47 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.022 -9.866 9.005 23.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.159 4.159 3 C -0.140 4.140 4 C -0.155 4.155 5 C 0.047 3.953 6 H 0.077 0.923 7 C 0.018 3.982 8 N -0.386 5.386 9 C -0.373 4.373 10 H 0.097 0.903 11 C -0.266 4.266 12 N -0.619 5.619 13 Si 0.800 3.200 14 H -0.219 1.219 15 H -0.226 1.226 16 H -0.190 1.190 17 N -0.352 5.352 18 C 0.371 3.629 19 O -0.429 6.429 20 C -0.282 4.282 21 C -0.103 4.103 22 N -0.118 5.118 23 N -0.115 5.115 24 C -0.070 4.070 25 C -0.079 4.079 26 C 0.286 3.714 27 F -0.178 7.178 28 F -0.155 7.155 29 H 0.066 0.934 30 H 0.082 0.918 31 H 0.067 0.933 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.070 0.930 35 H 0.064 0.936 36 H 0.099 0.901 37 H 0.095 0.905 38 H 0.054 0.946 39 H 0.059 0.941 40 H 0.206 0.794 41 H 0.057 0.943 42 H 0.240 0.760 43 H 0.228 0.772 44 H 0.128 0.872 45 H 0.124 0.876 46 H 0.132 0.868 47 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -19.510 -9.370 9.581 23.669 hybrid contribution 1.382 0.927 -0.639 1.783 sum -18.128 -8.443 8.942 21.906 Atomic orbital electron populations 1.21727 0.95752 1.01684 1.01373 1.21543 0.96096 0.96189 1.02078 1.21533 0.94505 0.96413 1.01588 1.21905 0.96210 0.94087 1.03321 1.21086 0.93868 0.94064 0.86274 0.92259 1.21127 0.91144 0.86735 0.99180 1.42544 1.04438 1.03905 1.87692 1.19642 0.85102 0.92596 1.39922 0.90251 1.25519 1.01604 0.95714 1.03724 1.69844 1.34601 0.98918 1.58577 0.85182 0.80603 0.77232 0.76984 1.21885 1.22597 1.19030 1.45644 1.15643 1.57144 1.16791 1.17280 0.82044 0.77560 0.86055 1.90829 1.51842 1.60007 1.40223 1.20188 0.95867 1.14495 0.97684 1.24412 1.00472 0.95826 0.89559 1.77213 0.91649 1.20032 1.22911 1.48625 1.13139 1.41181 1.08524 1.22768 0.86755 0.97772 0.99734 1.22178 0.97800 0.99163 0.88734 1.20089 0.86912 0.87501 0.76890 1.92918 1.79319 1.52482 1.93091 1.93207 1.89275 1.96714 1.36283 0.93404 0.91796 0.93312 0.91749 0.91751 0.93008 0.93623 0.90085 0.90517 0.94634 0.94132 0.79401 0.94316 0.76048 0.77226 0.87209 0.87635 0.86759 0.81127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.74 9.91 71.98 0.71 -2.02 16 2 C -0.12 -2.43 5.93 30.60 0.18 -2.25 16 3 C -0.10 -2.62 3.82 30.59 0.12 -2.50 16 4 C -0.12 -2.93 4.89 30.59 0.15 -2.79 16 5 C 0.15 4.95 2.42 44.99 0.11 5.06 16 6 H 0.06 2.30 7.58 -2.39 -0.02 2.28 16 7 C 0.14 5.42 5.82 86.38 0.50 5.92 16 8 N -0.74 -36.66 5.43 -343.46 -1.87 -38.52 16 9 C -0.24 -13.12 9.99 84.03 0.84 -12.28 16 10 H 0.08 4.10 7.83 -2.91 -0.02 4.08 16 11 C -0.07 -4.18 5.50 84.86 0.47 -3.72 16 12 N -0.97 -59.74 13.06 21.65 0.28 -59.46 16 13 Si 0.97 45.98 29.55 68.60 2.03 48.01 16 14 H -0.29 -13.74 7.11 99.48 0.71 -13.04 16 15 H -0.30 -14.39 7.11 99.48 0.71 -13.69 16 16 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 17 N -0.70 -22.22 4.46 -445.80 -1.99 -24.21 16 18 C 0.58 19.31 6.33 86.66 0.55 19.85 16 19 O -0.55 -20.11 10.31 -4.03 -0.04 -20.15 16 20 C -0.27 -7.91 6.09 -20.15 -0.12 -8.03 16 21 C 0.08 2.27 11.50 85.65 0.99 3.26 16 22 N -0.30 -8.09 12.50 -56.27 -0.70 -8.79 16 23 N -0.34 -7.72 3.98 -354.32 -1.41 -9.13 16 24 C 0.07 0.90 11.16 127.77 1.43 2.32 16 25 C 0.06 1.45 6.74 42.14 0.28 1.74 16 26 C 0.34 7.49 5.53 71.24 0.39 7.89 16 27 F -0.20 -3.93 14.55 44.97 0.65 -3.28 16 28 F -0.17 -5.50 13.52 44.97 0.61 -4.89 16 29 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.05 0.91 8.14 -2.38 -0.02 0.89 16 32 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.05 1.46 5.64 -2.39 -0.01 1.44 16 35 H 0.04 1.36 7.84 -2.39 -0.02 1.34 16 36 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.37 20.28 7.33 -92.70 -0.68 19.60 16 41 H 0.25 14.98 8.31 -92.71 -0.77 14.21 16 42 H 0.40 12.10 7.56 -92.71 -0.70 11.40 16 43 H 0.21 4.83 7.50 -2.91 -0.02 4.81 16 44 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 45 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 46 H 0.11 1.34 5.52 -2.39 -0.01 1.33 16 47 H 0.17 2.32 8.14 -2.39 -0.02 2.30 16 Total: -1.00 -73.28 387.14 3.78 -69.50 By element: Atomic # 1 Polarization: 38.84 SS G_CDS: -0.37 Total: 38.47 kcal Atomic # 6 Polarization: 5.87 SS G_CDS: 6.59 Total: 12.46 kcal Atomic # 7 Polarization: -134.43 SS G_CDS: -5.69 Total: -140.12 kcal Atomic # 8 Polarization: -20.11 SS G_CDS: -0.04 Total: -20.15 kcal Atomic # 9 Polarization: -9.43 SS G_CDS: 1.26 Total: -8.17 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.01 kcal Total: -73.28 3.78 -69.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700523157.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.952 kcal (2) G-P(sol) polarization free energy of solvation -73.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds