Wall clock time and date at job start Wed Apr 1 2020 02:33:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53009 * 109.47127 * 2 1 4 4 C 1.52999 * 109.47057 * 119.99697 * 2 1 3 5 5 H 1.09005 * 109.47033 * 60.00029 * 4 2 1 6 6 C 1.52997 * 109.47264 * 299.99952 * 4 2 1 7 7 N 1.46505 * 109.46985 * 184.99674 * 6 4 2 8 8 C 1.34774 * 119.99861 * 180.02562 * 7 6 4 9 9 O 1.21552 * 119.99940 * 0.02562 * 8 7 6 10 10 C 1.47853 * 120.00073 * 180.02562 * 8 7 6 11 11 C 1.39587 * 120.52609 * 359.72500 * 10 8 7 12 12 N 1.31664 * 120.70437 * 179.70311 * 11 10 8 13 13 C 1.31892 * 121.95460 * 0.58400 * 12 11 10 14 14 C 1.38891 * 120.98745 * 359.70576 * 13 12 11 15 15 N 1.40288 * 120.40995 * 180.02562 * 14 13 12 16 16 C 1.36113 * 125.94533 * 359.68955 * 15 14 13 17 17 C 1.35370 * 106.05235 * 179.90706 * 16 15 14 18 18 N 1.33771 * 106.53745 * 0.35240 * 17 16 15 19 19 N 1.28605 * 109.05998 * 359.77375 * 18 17 16 20 20 C 1.38982 * 119.17472 * 359.97438 * 14 13 12 21 21 N 1.46498 * 109.46890 * 179.97438 * 4 2 1 22 22 C 1.36935 * 120.00239 * 275.00034 * 21 4 2 23 23 H 1.08004 * 120.00069 * 0.02562 * 22 21 4 24 24 C 1.38811 * 120.00368 * 180.02562 * 22 21 4 25 25 N 1.31624 * 119.99540 * 359.72375 * 24 22 21 26 26 Si 1.86800 * 120.00451 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.46758 * 269.72270 * 26 24 22 28 28 H 1.48499 * 109.47026 * 29.72118 * 26 24 22 29 29 H 1.48496 * 109.47474 * 149.72153 * 26 24 22 30 30 H 1.09004 * 109.47252 * 59.99968 * 1 2 3 31 31 H 1.08999 * 109.47272 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47639 * 300.00185 * 1 2 3 33 33 H 1.08994 * 109.47535 * 240.00023 * 2 1 3 34 34 H 1.08994 * 109.47076 * 179.97438 * 3 2 1 35 35 H 1.08994 * 109.46954 * 300.00277 * 3 2 1 36 36 H 1.08997 * 109.46518 * 59.99948 * 3 2 1 37 37 H 1.08996 * 109.47726 * 304.99907 * 6 4 2 38 38 H 1.09001 * 109.46766 * 65.00647 * 6 4 2 39 39 H 0.96994 * 120.00104 * 0.02562 * 7 6 4 40 40 H 1.07997 * 119.64235 * 359.97438 * 11 10 8 41 41 H 1.08002 * 119.50382 * 179.71898 * 13 12 11 42 42 H 1.08001 * 126.97209 * 0.02562 * 16 15 14 43 43 H 1.08002 * 126.72793 * 180.14702 * 17 16 15 44 44 H 1.08001 * 120.88402 * 180.02562 * 20 14 13 45 45 H 0.97004 * 119.99747 * 95.00774 * 21 4 2 46 46 H 0.97000 * 120.00481 * 0.27542 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.6766 -1.7489 1.2493 6 6 1.5300 0.0001 2.4985 7 7 2.1141 -0.6176 3.6916 8 6 1.8052 -0.1444 4.9152 9 8 1.0416 0.7945 5.0288 10 6 2.3951 -0.7673 6.1194 11 6 3.2687 -1.8497 6.0020 12 7 3.8006 -2.4034 7.0716 13 6 3.5277 -1.9745 8.2886 14 6 2.6638 -0.9063 8.4934 15 7 2.3824 -0.4597 9.7932 16 6 2.8825 -0.9859 10.9446 17 6 2.3528 -0.2531 11.9520 18 7 1.5630 0.6636 11.3816 19 7 1.6019 0.5154 10.1047 20 6 2.0825 -0.2848 7.3946 21 7 3.5049 -0.7217 1.2489 22 6 4.1891 -1.6935 0.5688 23 1 3.6488 -2.4594 0.0322 24 6 5.5772 -1.6943 0.5689 25 7 6.2358 -0.7578 1.2183 26 14 6.5106 -3.0195 -0.3595 27 1 6.7633 -4.1715 0.5429 28 1 5.7050 -3.4695 -1.5230 29 1 7.8056 -2.4711 -0.8366 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 3.1299 1.4426 0.0005 35 1 1.6766 1.9564 -0.8899 36 1 1.6766 1.9563 0.8900 37 1 1.8183 1.0503 2.4549 38 1 0.4436 -0.0769 2.5444 39 1 2.7231 -1.3670 3.6010 40 1 3.5144 -2.2341 5.0231 41 1 3.9829 -2.4610 9.1386 42 1 3.5651 -1.8178 11.0358 43 1 2.5302 -0.3850 13.0092 44 1 1.4071 0.5483 7.5219 45 1 3.9902 -0.0337 1.7306 46 1 5.7512 -0.0693 1.7001 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715627321.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:33:37 Heat of formation + Delta-G solvation = 118.864222 kcal Electronic energy + Delta-G solvation = -29410.033738 eV Core-core repulsion = 25337.831094 eV Total energy + Delta-G solvation = -4072.202643 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.83696 -41.00491 -39.32406 -37.52755 -35.55846 -34.11407 -33.65524 -32.92953 -31.52451 -30.86249 -30.22162 -27.61533 -26.74916 -25.38545 -25.02575 -23.69934 -22.98439 -22.49126 -22.17227 -20.71016 -19.46443 -18.61600 -17.54489 -17.48696 -17.27632 -16.94112 -16.81302 -15.87052 -15.43868 -15.41932 -14.87914 -14.58611 -14.50165 -14.08009 -13.93532 -13.71987 -13.67598 -13.61902 -13.14183 -13.03138 -12.80627 -12.16881 -12.02508 -11.85497 -11.58191 -11.50750 -11.42981 -11.04473 -10.88622 -10.68437 -10.52174 -10.33900 -10.25527 -10.09526 -10.01130 -9.89009 -9.83199 -9.33658 -9.28763 -9.03142 -8.89649 -7.19312 -6.21562 -3.24660 -0.12054 0.34729 1.46662 1.70512 2.15522 2.63640 3.06583 3.41705 3.44647 3.48215 3.62487 3.71671 3.82349 4.06656 4.15987 4.36280 4.51976 4.55501 4.64749 4.74456 4.78707 5.05913 5.16939 5.20913 5.36455 5.45808 5.51369 5.53454 5.61088 5.64555 5.70428 5.72305 5.78354 5.96184 5.97806 6.17949 6.23007 6.23586 6.26896 6.40398 6.56350 6.64196 6.85967 6.89018 7.22478 7.54341 7.69597 8.02530 8.15056 8.62662 9.06103 9.92995 10.07130 11.25454 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.012269 B = 0.002686 C = 0.002291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2281.568507 B =10422.909509 C =12216.369131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.110 4.110 3 C -0.141 4.141 4 C 0.175 3.825 5 H 0.056 0.944 6 C 0.108 3.892 7 N -0.703 5.703 8 C 0.558 3.442 9 O -0.536 6.536 10 C -0.158 4.158 11 C 0.150 3.850 12 N -0.455 5.455 13 C 0.131 3.869 14 C 0.057 3.943 15 N -0.238 5.238 16 C -0.048 4.048 17 C -0.042 4.042 18 N -0.260 5.260 19 N -0.074 5.074 20 C 0.000 4.000 21 N -0.731 5.731 22 C -0.335 4.335 23 H 0.066 0.934 24 C -0.039 4.039 25 N -0.940 5.940 26 Si 1.079 2.921 27 H -0.295 1.295 28 H -0.295 1.295 29 H -0.289 1.289 30 H 0.047 0.953 31 H 0.050 0.950 32 H 0.052 0.948 33 H 0.074 0.926 34 H 0.064 0.936 35 H 0.041 0.959 36 H 0.046 0.954 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.409 0.591 40 H 0.178 0.822 41 H 0.171 0.829 42 H 0.198 0.802 43 H 0.197 0.803 44 H 0.167 0.833 45 H 0.368 0.632 46 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.630 -3.397 14.324 16.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.132 4.132 3 C -0.198 4.198 4 C 0.064 3.936 5 H 0.074 0.926 6 C -0.016 4.016 7 N -0.354 5.354 8 C 0.343 3.657 9 O -0.415 6.415 10 C -0.164 4.164 11 C -0.008 4.008 12 N -0.162 5.162 13 C -0.029 4.029 14 C -0.037 4.037 15 N -0.027 5.027 16 C -0.196 4.196 17 C -0.198 4.198 18 N -0.127 5.127 19 N -0.053 5.053 20 C -0.028 4.028 21 N -0.374 5.374 22 C -0.466 4.466 23 H 0.084 0.916 24 C -0.238 4.238 25 N -0.584 5.584 26 Si 0.910 3.090 27 H -0.223 1.223 28 H -0.222 1.222 29 H -0.215 1.215 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.092 0.908 34 H 0.083 0.917 35 H 0.060 0.940 36 H 0.065 0.935 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.247 0.753 40 H 0.195 0.805 41 H 0.188 0.812 42 H 0.215 0.785 43 H 0.214 0.786 44 H 0.185 0.815 45 H 0.202 0.798 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -7.113 -3.056 13.261 15.355 hybrid contribution -0.830 0.225 0.857 1.214 sum -7.942 -2.831 14.118 16.444 Atomic orbital electron populations 1.21926 0.96559 1.01081 1.01139 1.21702 0.93722 0.97052 1.00755 1.21768 1.02303 0.95712 1.00013 1.20462 0.85862 0.96848 0.90380 0.92592 1.21954 0.97680 0.98068 0.83874 1.45932 1.48100 1.36255 1.05127 1.17792 0.81616 0.83397 0.82939 1.90796 1.36088 1.28022 1.86562 1.21058 1.01611 0.99297 0.94464 1.23432 0.88980 0.89846 0.98587 1.67916 1.22183 1.28421 0.97708 1.22891 0.92458 0.91095 0.96504 1.18633 1.03589 0.99998 0.81452 1.44628 1.30227 1.22158 1.05650 1.23913 1.06258 1.04977 0.84444 1.23707 0.99330 0.95405 1.01323 1.75163 1.18251 1.20796 0.98468 1.78481 1.11246 1.05509 1.10079 1.21532 0.94852 0.97406 0.88996 1.42475 0.99362 1.33403 1.62185 1.20023 0.91684 1.06268 1.28593 0.91620 1.25713 0.93387 1.03081 1.01593 1.70878 1.37389 1.15294 1.34878 0.83235 0.75814 0.74589 0.75332 1.22255 1.22196 1.21472 0.93369 0.93124 0.92918 0.90770 0.91715 0.93998 0.93537 0.90989 0.91017 0.75329 0.80521 0.81174 0.78535 0.78569 0.81537 0.79838 0.93333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 8.84 37.15 0.33 -1.63 16 2 C -0.11 -1.77 2.91 -90.62 -0.26 -2.04 16 3 C -0.14 -2.26 8.69 37.16 0.32 -1.94 16 4 C 0.17 2.99 2.27 -67.93 -0.15 2.84 16 5 H 0.06 0.98 8.08 -51.93 -0.42 0.56 16 6 C 0.11 1.67 4.51 -4.04 -0.02 1.65 16 7 N -0.70 -10.41 5.34 -61.25 -0.33 -10.74 16 8 C 0.56 8.45 7.78 -12.33 -0.10 8.36 16 9 O -0.54 -9.65 16.42 5.32 0.09 -9.56 16 10 C -0.16 -2.03 5.89 -104.84 -0.62 -2.65 16 11 C 0.15 1.78 10.71 -17.12 -0.18 1.59 16 12 N -0.46 -5.15 10.34 -12.77 -0.13 -5.28 16 13 C 0.13 1.19 10.62 -17.28 -0.18 1.01 16 14 C 0.06 0.61 6.69 -83.47 -0.56 0.05 16 15 N -0.24 -2.55 3.56 -10.41 -0.04 -2.59 16 16 C -0.05 -0.35 10.93 -16.67 -0.18 -0.53 16 17 C -0.04 -0.35 12.05 -17.73 -0.21 -0.56 16 18 N -0.26 -3.25 12.39 30.24 0.37 -2.87 16 19 N -0.07 -0.99 12.49 60.35 0.75 -0.24 16 20 C 0.00 0.00 9.27 -38.69 -0.36 -0.36 16 21 N -0.73 -15.52 3.79 -53.43 -0.20 -15.72 16 22 C -0.33 -8.27 9.93 -15.06 -0.15 -8.42 16 23 H 0.07 1.63 7.83 -52.48 -0.41 1.21 16 24 C -0.04 -1.04 5.50 -17.43 -0.10 -1.14 16 25 N -0.94 -26.78 13.70 55.49 0.76 -26.02 16 26 Si 1.08 24.22 29.92 -169.99 -5.09 19.13 16 27 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 28 H -0.30 -6.32 7.11 56.52 0.40 -5.91 16 29 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.05 0.66 6.54 -51.93 -0.34 0.32 16 33 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 34 H 0.06 1.22 7.60 -51.93 -0.39 0.82 16 35 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.05 0.70 6.32 -51.93 -0.33 0.37 16 37 H 0.07 1.19 6.17 -51.93 -0.32 0.87 16 38 H 0.07 1.04 6.71 -51.93 -0.35 0.69 16 39 H 0.41 5.95 6.20 -40.82 -0.25 5.69 16 40 H 0.18 1.98 6.42 -52.49 -0.34 1.65 16 41 H 0.17 0.88 6.77 -52.49 -0.36 0.53 16 42 H 0.20 0.52 7.12 -52.49 -0.37 0.15 16 43 H 0.20 0.82 8.06 -52.49 -0.42 0.39 16 44 H 0.17 2.21 7.45 -52.49 -0.39 1.82 16 45 H 0.37 8.33 6.63 -40.82 -0.27 8.06 16 46 H 0.26 7.17 6.77 -40.82 -0.28 6.89 16 LS Contribution 383.12 15.07 5.77 5.77 Total: -1.00 -32.42 383.12 -6.19 -38.61 By element: Atomic # 1 Polarization: 18.99 SS G_CDS: -5.73 Total: 13.27 kcal Atomic # 6 Polarization: -1.34 SS G_CDS: -2.42 Total: -3.76 kcal Atomic # 7 Polarization: -64.65 SS G_CDS: 1.19 Total: -63.46 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: 0.09 Total: -9.56 kcal Atomic # 14 Polarization: 24.22 SS G_CDS: -5.09 Total: 19.13 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.42 -6.19 -38.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715627321.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.475 kcal (2) G-P(sol) polarization free energy of solvation -32.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.611 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds