Wall clock time and date at job start Wed Apr 1 2020 02:42:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 119.99871 * 2 1 4 4 H 1.48497 * 109.47279 * 269.99896 * 3 2 1 5 5 H 1.48495 * 109.47033 * 30.00100 * 3 2 1 6 6 H 1.48500 * 109.46963 * 150.00103 * 3 2 1 7 7 C 1.37881 * 120.00267 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99793 * 0.02562 * 7 2 1 9 9 C 1.50694 * 120.00070 * 179.97438 * 7 2 1 10 10 N 1.46901 * 109.47166 * 176.41095 * 9 7 2 11 11 C 1.46908 * 110.99973 * 75.56048 * 10 9 7 12 12 C 1.50693 * 109.46996 * 190.00348 * 11 10 9 13 13 O 1.21285 * 120.00408 * 359.97438 * 12 11 10 14 14 N 1.34780 * 120.00129 * 179.97438 * 12 11 10 15 15 C 1.46490 * 120.00495 * 179.97438 * 14 12 11 16 16 H 1.09005 * 109.43780 * 325.08548 * 15 14 12 17 17 C 1.53076 * 109.43803 * 205.22182 * 15 14 12 18 18 C 1.53413 * 108.30109 * 191.77922 * 17 15 14 19 19 O 1.42831 * 108.36236 * 64.74560 * 18 17 15 20 20 C 1.35845 * 117.84629 * 310.78686 * 19 18 17 21 21 C 1.39145 * 118.49462 * 197.08229 * 20 19 18 22 22 C 1.37970 * 120.21843 * 180.22859 * 21 20 19 23 23 C 1.38289 * 119.95074 * 0.02562 * 22 21 20 24 24 C 1.38097 * 119.99274 * 359.90992 * 23 22 21 25 25 C 1.38372 * 121.81103 * 17.16537 * 20 19 18 26 26 C 1.46902 * 111.00370 * 199.51276 * 10 9 7 27 27 C 1.52997 * 109.46706 * 72.00749 * 26 10 9 28 28 C 1.53005 * 117.49990 * 243.81658 * 27 26 10 29 29 C 1.53004 * 117.49654 * 175.15913 * 27 26 10 30 30 H 0.97002 * 120.00185 * 0.02562 * 1 2 3 31 31 H 1.09003 * 109.47545 * 56.41319 * 9 7 2 32 32 H 1.09001 * 109.47538 * 296.40902 * 9 7 2 33 33 H 1.08992 * 109.46838 * 69.99969 * 11 10 9 34 34 H 1.09003 * 109.46399 * 310.00167 * 11 10 9 35 35 H 0.97006 * 119.99314 * 0.02562 * 14 12 11 36 36 H 1.08997 * 109.69492 * 311.48537 * 17 15 14 37 37 H 1.09000 * 109.69769 * 72.07862 * 17 15 14 38 38 H 1.09000 * 109.68410 * 305.03140 * 18 17 15 39 39 H 1.08994 * 109.71888 * 184.48214 * 18 17 15 40 40 H 1.07999 * 119.89124 * 0.20540 * 21 20 19 41 41 H 1.07992 * 120.02298 * 180.02562 * 22 21 20 42 42 H 1.08004 * 120.00268 * 179.97438 * 23 22 21 43 43 H 1.07999 * 119.84886 * 180.02562 * 24 23 22 44 44 H 1.08998 * 109.46877 * 192.00596 * 26 10 9 45 45 H 1.08994 * 109.47039 * 312.01039 * 26 10 9 46 46 H 1.09000 * 115.55388 * 29.48542 * 27 26 10 47 47 H 1.09003 * 117.49255 * 0.02562 * 28 27 26 48 48 H 1.08998 * 117.50189 * 145.02124 * 28 27 26 49 49 H 1.09001 * 117.49393 * 214.97528 * 29 27 26 50 50 H 1.08994 * 117.49904 * 359.97373 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6526 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0000 10 7 4.0013 -2.5762 0.0874 11 6 3.8538 -3.2694 -1.1995 12 6 4.1317 -4.7387 -1.0132 13 8 4.4242 -5.1664 0.0834 14 7 4.0551 -5.5777 -2.0653 15 6 4.3258 -7.0060 -1.8844 16 1 5.1073 -7.1351 -1.1356 17 6 4.7901 -7.6087 -3.2127 18 6 4.7808 -9.1368 -3.0778 19 8 3.4312 -9.5634 -2.8860 20 6 2.6936 -8.9283 -1.9384 21 6 1.5295 -9.5397 -1.4833 22 6 0.7508 -8.9240 -0.5250 23 6 1.1272 -7.6951 -0.0147 24 6 2.2826 -7.0859 -0.4630 25 6 3.0694 -7.7003 -1.4233 26 6 5.3957 -2.6126 0.5482 27 6 5.4514 -2.2510 2.0337 28 6 6.1991 -0.9739 2.4225 29 6 6.8093 -2.3431 2.7328 30 1 -0.4850 0.8400 -0.0004 31 1 3.8752 -0.6249 0.8555 32 1 3.8745 -0.7375 -0.9209 33 1 4.5599 -2.8543 -1.9186 34 1 2.8373 -3.1358 -1.5696 35 1 3.8215 -5.2355 -2.9424 36 1 4.1117 -7.3061 -4.0104 37 1 5.7998 -7.2659 -3.4387 38 1 5.3850 -9.4333 -2.2204 39 1 5.1833 -9.5885 -3.9844 40 1 1.2342 -10.4991 -1.8817 41 1 -0.1518 -9.4015 -0.1737 42 1 0.5181 -7.2122 0.7352 43 1 2.5746 -6.1264 -0.0626 44 1 5.8004 -3.6141 0.4025 45 1 5.9857 -1.8956 -0.0226 46 1 4.5673 -2.5132 2.6149 47 1 6.6509 -0.3912 1.6197 48 1 5.8072 -0.3963 3.2596 49 1 6.8184 -2.6655 3.7739 50 1 7.6628 -2.6617 2.1344 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081043875.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:42:49 Heat of formation + Delta-G solvation = -5.745024 kcal Electronic energy + Delta-G solvation = -30687.506351 eV Core-core repulsion = 26681.147837 eV Total energy + Delta-G solvation = -4006.358513 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.05101 -39.45451 -37.63016 -37.44822 -35.73453 -35.04501 -32.44621 -32.13083 -30.65723 -30.14749 -28.46226 -27.87448 -25.39734 -24.03509 -23.63944 -22.34055 -22.02960 -21.09909 -20.37512 -20.12519 -19.58284 -17.89913 -17.11165 -16.85247 -16.56860 -16.47743 -15.84200 -15.51331 -15.01776 -14.86854 -14.55345 -14.37672 -14.15535 -13.85584 -13.64849 -13.56785 -13.30254 -13.23183 -13.15560 -12.58231 -12.34848 -12.14464 -12.07654 -11.76554 -11.61279 -11.44595 -11.29543 -11.20280 -10.98138 -10.84096 -10.72401 -10.68516 -10.57034 -9.98300 -9.77899 -9.62528 -9.33747 -9.24354 -8.98118 -8.76451 -8.58026 -8.18708 -7.42393 -6.05676 -4.02882 1.30405 1.47977 2.89699 3.06841 3.22681 3.26499 3.35524 3.37700 3.84141 4.19122 4.31119 4.41164 4.45975 4.54480 4.65981 4.82057 4.85094 5.07670 5.14083 5.19816 5.21911 5.26587 5.30156 5.32641 5.42017 5.45008 5.50651 5.53741 5.70755 5.72698 5.76823 5.88009 5.90004 6.01372 6.07037 6.10888 6.17117 6.31400 6.33285 6.41463 6.44165 6.57721 6.69347 6.74494 6.79477 6.81626 6.92399 7.35667 7.52267 7.63063 7.87634 7.96853 8.47391 8.64869 9.03628 9.56111 11.07418 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.011292 B = 0.003137 C = 0.002783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2479.126292 B = 8923.368867 C =10058.362495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.070 3.930 3 Si 0.871 3.129 4 H -0.278 1.278 5 H -0.286 1.286 6 H -0.265 1.265 7 C -0.508 4.508 8 H 0.080 0.920 9 C 0.162 3.838 10 N -0.505 5.505 11 C 0.044 3.956 12 C 0.516 3.484 13 O -0.515 6.515 14 N -0.731 5.731 15 C 0.194 3.806 16 H 0.098 0.902 17 C -0.166 4.166 18 C 0.067 3.933 19 O -0.319 6.319 20 C 0.132 3.868 21 C -0.159 4.159 22 C -0.084 4.084 23 C -0.152 4.152 24 C -0.063 4.063 25 C -0.177 4.177 26 C 0.083 3.917 27 C -0.122 4.122 28 C -0.188 4.188 29 C -0.185 4.185 30 H 0.263 0.737 31 H 0.039 0.961 32 H -0.017 1.017 33 H 0.050 0.950 34 H 0.117 0.883 35 H 0.401 0.599 36 H 0.084 0.916 37 H 0.090 0.910 38 H 0.066 0.934 39 H 0.110 0.890 40 H 0.127 0.873 41 H 0.126 0.874 42 H 0.125 0.875 43 H 0.140 0.860 44 H 0.080 0.920 45 H 0.018 0.982 46 H 0.114 0.886 47 H 0.086 0.914 48 H 0.089 0.911 49 H 0.089 0.911 50 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.027 -16.241 -6.269 20.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.132 4.132 3 Si 0.698 3.302 4 H -0.204 1.204 5 H -0.212 1.212 6 H -0.189 1.189 7 C -0.546 4.546 8 H 0.098 0.902 9 C 0.036 3.964 10 N -0.229 5.229 11 C -0.088 4.088 12 C 0.303 3.697 13 O -0.390 6.390 14 N -0.384 5.384 15 C 0.089 3.911 16 H 0.116 0.884 17 C -0.205 4.205 18 C -0.009 4.009 19 O -0.233 6.233 20 C 0.086 3.914 21 C -0.177 4.177 22 C -0.103 4.103 23 C -0.170 4.170 24 C -0.081 4.081 25 C -0.179 4.179 26 C -0.045 4.045 27 C -0.141 4.141 28 C -0.225 4.225 29 C -0.222 4.222 30 H 0.073 0.927 31 H 0.057 0.943 32 H 0.001 0.999 33 H 0.068 0.932 34 H 0.135 0.865 35 H 0.235 0.765 36 H 0.103 0.897 37 H 0.109 0.891 38 H 0.084 0.916 39 H 0.128 0.872 40 H 0.145 0.855 41 H 0.144 0.856 42 H 0.143 0.857 43 H 0.158 0.842 44 H 0.098 0.902 45 H 0.036 0.964 46 H 0.132 0.868 47 H 0.105 0.895 48 H 0.108 0.892 49 H 0.107 0.893 50 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 10.754 -16.786 -5.225 20.609 hybrid contribution 0.769 1.826 -0.957 2.200 sum 11.523 -14.960 -6.182 19.870 Atomic orbital electron populations 1.69890 1.06106 1.26781 1.51077 1.24875 0.94675 0.98718 0.94895 0.86929 0.80595 0.84248 0.78434 1.20434 1.21188 1.18923 1.21037 0.88723 0.94655 1.50189 0.90195 1.20282 0.97088 0.83659 0.95383 1.61612 1.17890 1.18531 1.24881 1.21913 1.04130 0.89410 0.93298 1.21080 0.75617 0.89015 0.83960 1.90672 1.45750 1.78080 1.24469 1.46118 1.73130 1.06771 1.12430 1.19527 0.94227 0.80468 0.96917 0.88407 1.22505 1.03709 0.96443 0.97794 1.22903 0.81458 0.93657 1.02847 1.85976 1.24641 1.59023 1.53642 1.18672 0.92320 0.90848 0.89518 1.20505 0.95487 1.01255 1.00481 1.20964 0.98733 0.95063 0.95506 1.21163 0.97831 0.96102 1.01928 1.21416 0.92937 1.00229 0.93476 1.20193 1.00174 0.95407 1.02147 1.21733 0.89734 1.00220 0.92777 1.22204 0.95330 0.99914 0.96624 1.23024 1.05092 0.90959 1.03410 1.22901 0.97328 1.00970 1.01022 0.92697 0.94255 0.99902 0.93224 0.86533 0.76487 0.89726 0.89109 0.91553 0.87158 0.85538 0.85574 0.85660 0.84209 0.90168 0.96429 0.86774 0.89506 0.89204 0.89258 0.89560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.12 13.96 55.43 0.77 -26.34 16 2 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 3 Si 0.87 21.08 27.54 -169.99 -4.68 16.40 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.26 -6.17 6.44 56.52 0.36 -5.81 16 7 C -0.51 -14.00 9.15 -34.44 -0.32 -14.32 16 8 H 0.08 2.42 7.92 -52.49 -0.42 2.00 16 9 C 0.16 3.79 3.67 -4.98 -0.02 3.77 16 10 N -0.51 -10.36 4.12 -237.52 -0.98 -11.34 16 11 C 0.04 0.76 5.27 -4.98 -0.03 0.73 16 12 C 0.52 8.13 5.96 -10.99 -0.07 8.06 16 13 O -0.52 -9.59 12.40 5.55 0.07 -9.52 16 14 N -0.73 -8.84 4.86 -54.87 -0.27 -9.10 16 15 C 0.19 2.23 2.70 -69.01 -0.19 2.04 16 16 H 0.10 1.24 7.57 -51.93 -0.39 0.85 16 17 C -0.17 -1.32 5.67 -26.48 -0.15 -1.47 16 18 C 0.07 0.52 7.03 37.37 0.26 0.78 16 19 O -0.32 -3.58 10.27 -19.25 -0.20 -3.77 16 20 C 0.13 1.68 6.47 -39.20 -0.25 1.43 16 21 C -0.16 -1.92 9.94 -39.34 -0.39 -2.31 16 22 C -0.08 -1.02 10.04 -39.66 -0.40 -1.42 16 23 C -0.15 -2.14 10.04 -39.61 -0.40 -2.53 16 24 C -0.06 -0.97 9.08 -39.53 -0.36 -1.32 16 25 C -0.18 -2.40 5.56 -104.44 -0.58 -2.98 16 26 C 0.08 1.51 4.80 -3.82 -0.02 1.49 16 27 C -0.12 -2.14 4.97 -90.62 -0.45 -2.60 16 28 C -0.19 -2.94 10.00 -26.69 -0.27 -3.21 16 29 C -0.18 -2.65 10.25 -26.69 -0.27 -2.92 16 30 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 31 H 0.04 0.95 5.78 -51.93 -0.30 0.65 16 32 H -0.02 -0.38 7.61 -51.93 -0.40 -0.78 16 33 H 0.05 0.75 8.12 -51.93 -0.42 0.33 16 34 H 0.12 2.17 7.33 -51.93 -0.38 1.78 16 35 H 0.40 3.90 8.58 -40.82 -0.35 3.55 16 36 H 0.08 0.66 8.11 -51.93 -0.42 0.24 16 37 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 41 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 42 H 0.13 1.66 8.06 -52.48 -0.42 1.24 16 43 H 0.14 2.50 4.70 -52.49 -0.25 2.25 16 44 H 0.08 1.43 5.81 -51.93 -0.30 1.13 16 45 H 0.02 0.31 7.79 -51.93 -0.40 -0.10 16 46 H 0.11 2.24 8.14 -51.93 -0.42 1.81 16 47 H 0.09 1.32 8.03 -51.93 -0.42 0.91 16 48 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 49 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 50 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 396.70 15.07 5.98 5.98 Total: -1.00 -32.65 396.70 -11.14 -43.79 By element: Atomic # 1 Polarization: 16.65 SS G_CDS: -7.85 Total: 8.81 kcal Atomic # 6 Polarization: -10.90 SS G_CDS: -3.99 Total: -14.89 kcal Atomic # 7 Polarization: -46.32 SS G_CDS: -0.47 Total: -46.79 kcal Atomic # 8 Polarization: -13.17 SS G_CDS: -0.13 Total: -13.30 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.68 Total: 16.40 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -32.65 -11.14 -43.79 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081043875.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.044 kcal (2) G-P(sol) polarization free energy of solvation -32.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds