Wall clock time and date at job start Wed Apr 1 2020 02:42:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 119.99871 * 2 1 4 4 H 1.48497 * 109.47279 * 269.99896 * 3 2 1 5 5 H 1.48495 * 109.47033 * 30.00100 * 3 2 1 6 6 H 1.48500 * 109.46963 * 150.00103 * 3 2 1 7 7 C 1.37881 * 120.00267 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99793 * 0.02562 * 7 2 1 9 9 C 1.50694 * 120.00070 * 179.97438 * 7 2 1 10 10 N 1.46901 * 109.47166 * 176.41095 * 9 7 2 11 11 C 1.46908 * 110.99973 * 75.56048 * 10 9 7 12 12 C 1.50693 * 109.46996 * 190.00348 * 11 10 9 13 13 O 1.21285 * 120.00408 * 359.97438 * 12 11 10 14 14 N 1.34780 * 120.00129 * 179.97438 * 12 11 10 15 15 C 1.46490 * 120.00495 * 179.97438 * 14 12 11 16 16 H 1.09005 * 109.43780 * 325.08548 * 15 14 12 17 17 C 1.53076 * 109.43803 * 205.22182 * 15 14 12 18 18 C 1.53413 * 108.30109 * 191.77922 * 17 15 14 19 19 O 1.42831 * 108.36236 * 64.74560 * 18 17 15 20 20 C 1.35845 * 117.84629 * 310.78686 * 19 18 17 21 21 C 1.39145 * 118.49462 * 197.08229 * 20 19 18 22 22 C 1.37970 * 120.21843 * 180.22859 * 21 20 19 23 23 C 1.38289 * 119.95074 * 0.02562 * 22 21 20 24 24 C 1.38097 * 119.99274 * 359.90992 * 23 22 21 25 25 C 1.38372 * 121.81103 * 17.16537 * 20 19 18 26 26 C 1.46902 * 111.00370 * 199.51276 * 10 9 7 27 27 C 1.52997 * 109.46706 * 72.00749 * 26 10 9 28 28 C 1.53005 * 117.49990 * 243.81658 * 27 26 10 29 29 C 1.53004 * 117.49654 * 175.15913 * 27 26 10 30 30 H 0.97002 * 120.00185 * 0.02562 * 1 2 3 31 31 H 1.09003 * 109.47545 * 56.41319 * 9 7 2 32 32 H 1.09001 * 109.47538 * 296.40902 * 9 7 2 33 33 H 1.08992 * 109.46838 * 69.99969 * 11 10 9 34 34 H 1.09003 * 109.46399 * 310.00167 * 11 10 9 35 35 H 0.97006 * 119.99314 * 0.02562 * 14 12 11 36 36 H 1.08997 * 109.69492 * 311.48537 * 17 15 14 37 37 H 1.09000 * 109.69769 * 72.07862 * 17 15 14 38 38 H 1.09000 * 109.68410 * 305.03140 * 18 17 15 39 39 H 1.08994 * 109.71888 * 184.48214 * 18 17 15 40 40 H 1.07999 * 119.89124 * 0.20540 * 21 20 19 41 41 H 1.07992 * 120.02298 * 180.02562 * 22 21 20 42 42 H 1.08004 * 120.00268 * 179.97438 * 23 22 21 43 43 H 1.07999 * 119.84886 * 180.02562 * 24 23 22 44 44 H 1.08998 * 109.46877 * 192.00596 * 26 10 9 45 45 H 1.08994 * 109.47039 * 312.01039 * 26 10 9 46 46 H 1.09000 * 115.55388 * 29.48542 * 27 26 10 47 47 H 1.09003 * 117.49255 * 0.02562 * 28 27 26 48 48 H 1.08998 * 117.50189 * 145.02124 * 28 27 26 49 49 H 1.09001 * 117.49393 * 214.97528 * 29 27 26 50 50 H 1.08994 * 117.49904 * 359.97373 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6526 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0000 10 7 4.0013 -2.5762 0.0874 11 6 3.8538 -3.2694 -1.1995 12 6 4.1317 -4.7387 -1.0132 13 8 4.4242 -5.1664 0.0834 14 7 4.0551 -5.5777 -2.0653 15 6 4.3258 -7.0060 -1.8844 16 1 5.1073 -7.1351 -1.1356 17 6 4.7901 -7.6087 -3.2127 18 6 4.7808 -9.1368 -3.0778 19 8 3.4312 -9.5634 -2.8860 20 6 2.6936 -8.9283 -1.9384 21 6 1.5295 -9.5397 -1.4833 22 6 0.7508 -8.9240 -0.5250 23 6 1.1272 -7.6951 -0.0147 24 6 2.2826 -7.0859 -0.4630 25 6 3.0694 -7.7003 -1.4233 26 6 5.3957 -2.6126 0.5482 27 6 5.4514 -2.2510 2.0337 28 6 6.1991 -0.9739 2.4225 29 6 6.8093 -2.3431 2.7328 30 1 -0.4850 0.8400 -0.0004 31 1 3.8752 -0.6249 0.8555 32 1 3.8745 -0.7375 -0.9209 33 1 4.5599 -2.8543 -1.9186 34 1 2.8373 -3.1358 -1.5696 35 1 3.8215 -5.2355 -2.9424 36 1 4.1117 -7.3061 -4.0104 37 1 5.7998 -7.2659 -3.4387 38 1 5.3850 -9.4333 -2.2204 39 1 5.1833 -9.5885 -3.9844 40 1 1.2342 -10.4991 -1.8817 41 1 -0.1518 -9.4015 -0.1737 42 1 0.5181 -7.2122 0.7352 43 1 2.5746 -6.1264 -0.0626 44 1 5.8004 -3.6141 0.4025 45 1 5.9857 -1.8956 -0.0226 46 1 4.5673 -2.5132 2.6149 47 1 6.6509 -0.3912 1.6197 48 1 5.8072 -0.3963 3.2596 49 1 6.8184 -2.6655 3.7739 50 1 7.6628 -2.6617 2.1344 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081043875.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:42:48 Heat of formation + Delta-G solvation = -27.136262 kcal Electronic energy + Delta-G solvation = -30688.433944 eV Core-core repulsion = 26681.147837 eV Total energy + Delta-G solvation = -4007.286107 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.02204 -40.68420 -38.94874 -38.41310 -36.96577 -36.38407 -34.54495 -33.15595 -31.56934 -31.15754 -30.31543 -29.25105 -26.47870 -25.48467 -24.63804 -23.44957 -23.19556 -22.72678 -21.53824 -21.19127 -20.95412 -18.97159 -18.84795 -18.24056 -17.63098 -17.47189 -16.93175 -16.81613 -16.40603 -16.11366 -15.94167 -15.55676 -15.26587 -15.19184 -15.12058 -14.69497 -14.62674 -14.35338 -14.24084 -14.13252 -13.67944 -13.45984 -13.38302 -13.02767 -12.95783 -12.56244 -12.48238 -12.41754 -12.33696 -12.23444 -12.18607 -11.80035 -11.76748 -11.64750 -11.50842 -11.11552 -10.91199 -10.76720 -10.55504 -10.16114 -9.80728 -9.17465 -9.00076 -8.25556 -6.28409 0.28786 0.42722 1.34848 1.38384 1.48712 1.62547 2.03729 2.35802 2.36285 2.79902 2.92560 3.07753 3.23788 3.52636 3.61917 3.75865 3.82059 3.94807 4.04111 4.07627 4.16621 4.18937 4.20901 4.33530 4.39037 4.47645 4.49706 4.53986 4.54382 4.60220 4.66958 4.69857 4.76803 4.81698 4.92692 4.94962 4.96995 5.03873 5.07139 5.08849 5.26416 5.29236 5.36460 5.40947 5.52099 5.58407 5.63838 5.79995 6.00424 6.25623 6.45387 6.57407 6.66011 6.77395 7.27220 7.35006 8.91223 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.011292 B = 0.003137 C = 0.002783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2479.126292 B = 8923.368867 C =10058.362495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.011 3.989 3 Si 0.942 3.058 4 H -0.264 1.264 5 H -0.285 1.285 6 H -0.247 1.247 7 C -0.511 4.511 8 H 0.033 0.967 9 C 0.177 3.823 10 N -0.530 5.530 11 C 0.044 3.956 12 C 0.522 3.478 13 O -0.547 6.547 14 N -0.713 5.713 15 C 0.192 3.808 16 H 0.085 0.915 17 C -0.156 4.156 18 C 0.060 3.940 19 O -0.323 6.323 20 C 0.131 3.869 21 C -0.161 4.161 22 C -0.080 4.080 23 C -0.173 4.173 24 C -0.090 4.090 25 C -0.186 4.186 26 C 0.093 3.907 27 C -0.156 4.156 28 C -0.185 4.185 29 C -0.157 4.157 30 H 0.265 0.735 31 H 0.035 0.965 32 H -0.006 1.006 33 H 0.079 0.921 34 H 0.094 0.906 35 H 0.414 0.586 36 H 0.090 0.910 37 H 0.117 0.883 38 H 0.071 0.929 39 H 0.146 0.854 40 H 0.151 0.849 41 H 0.155 0.845 42 H 0.120 0.880 43 H 0.108 0.892 44 H 0.081 0.919 45 H 0.031 0.969 46 H 0.081 0.919 47 H 0.095 0.905 48 H 0.091 0.909 49 H 0.102 0.898 50 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.903 -16.891 -7.998 23.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.187 4.187 3 Si 0.766 3.234 4 H -0.189 1.189 5 H -0.211 1.211 6 H -0.171 1.171 7 C -0.550 4.550 8 H 0.051 0.949 9 C 0.050 3.950 10 N -0.254 5.254 11 C -0.088 4.088 12 C 0.309 3.691 13 O -0.425 6.425 14 N -0.367 5.367 15 C 0.088 3.912 16 H 0.103 0.897 17 C -0.194 4.194 18 C -0.015 4.015 19 O -0.238 6.238 20 C 0.085 3.915 21 C -0.179 4.179 22 C -0.098 4.098 23 C -0.192 4.192 24 C -0.109 4.109 25 C -0.188 4.188 26 C -0.034 4.034 27 C -0.175 4.175 28 C -0.222 4.222 29 C -0.194 4.194 30 H 0.074 0.926 31 H 0.053 0.947 32 H 0.011 0.989 33 H 0.096 0.904 34 H 0.112 0.888 35 H 0.250 0.750 36 H 0.108 0.892 37 H 0.136 0.864 38 H 0.089 0.911 39 H 0.164 0.836 40 H 0.169 0.831 41 H 0.173 0.827 42 H 0.138 0.862 43 H 0.126 0.874 44 H 0.099 0.901 45 H 0.049 0.951 46 H 0.100 0.900 47 H 0.114 0.886 48 H 0.110 0.890 49 H 0.120 0.880 50 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 13.654 -17.468 -6.999 23.249 hybrid contribution -0.183 1.862 -0.424 1.919 sum 13.471 -15.605 -7.423 21.911 Atomic orbital electron populations 1.70056 1.08164 1.27970 1.52782 1.25791 0.95489 1.02940 0.94431 0.85788 0.79601 0.78762 0.79285 1.18858 1.21132 1.17100 1.21240 0.91147 0.92973 1.49593 0.94879 1.19962 0.94033 0.85618 0.95378 1.61436 1.20048 1.17000 1.26939 1.21882 1.03623 0.90631 0.92617 1.20738 0.75476 0.88677 0.84195 1.90656 1.47582 1.78404 1.25823 1.45914 1.71691 1.06991 1.12060 1.19678 0.93073 0.79567 0.98926 0.89701 1.22501 1.05170 0.96416 0.95271 1.23270 0.79871 0.93552 1.04789 1.85980 1.26136 1.58918 1.52721 1.18794 0.92743 0.90446 0.89467 1.20880 0.95058 1.02029 0.99975 1.21238 0.99550 0.93968 0.94999 1.21276 0.97837 0.97428 1.02618 1.21292 0.94558 0.99744 0.95273 1.20334 1.00626 0.96082 1.01789 1.21676 0.88075 1.00569 0.93127 1.22115 0.96174 1.02851 0.96361 1.23097 1.04425 0.91031 1.03641 1.22986 0.95553 0.99328 1.01560 0.92557 0.94662 0.98851 0.90360 0.88766 0.74951 0.89188 0.86421 0.91053 0.83624 0.83111 0.82749 0.86194 0.87439 0.90097 0.95133 0.90025 0.88621 0.89013 0.88005 0.87708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.43 13.96 21.45 0.30 -59.13 16 2 C 0.01 0.62 5.47 84.66 0.46 1.08 16 3 Si 0.94 43.59 27.54 68.60 1.89 45.48 16 4 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 5 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 6 H -0.25 -10.68 6.44 99.48 0.64 -10.04 16 7 C -0.51 -29.47 9.15 25.60 0.23 -29.24 16 8 H 0.03 2.16 7.92 -2.91 -0.02 2.13 16 9 C 0.18 8.37 3.67 85.55 0.31 8.69 16 10 N -0.53 -22.37 4.12 -905.38 -3.73 -26.10 16 11 C 0.04 1.55 5.27 85.55 0.45 2.00 16 12 C 0.52 17.03 5.96 87.65 0.52 17.56 16 13 O -0.55 -21.42 12.40 -3.04 -0.04 -21.46 16 14 N -0.71 -17.26 4.86 -445.88 -2.17 -19.43 16 15 C 0.19 4.32 2.70 44.29 0.12 4.44 16 16 H 0.09 2.15 7.57 -2.38 -0.02 2.14 16 17 C -0.16 -2.05 5.67 30.76 0.17 -1.87 16 18 C 0.06 0.74 7.03 72.12 0.51 1.25 16 19 O -0.32 -6.46 10.27 -91.81 -0.94 -7.40 16 20 C 0.13 3.21 6.47 22.52 0.15 3.36 16 21 C -0.16 -3.67 9.94 22.42 0.22 -3.45 16 22 C -0.08 -1.89 10.04 22.22 0.22 -1.67 16 23 C -0.17 -5.19 10.04 22.25 0.22 -4.96 16 24 C -0.09 -2.99 9.08 22.30 0.20 -2.79 16 25 C -0.19 -5.11 5.56 -19.75 -0.11 -5.22 16 26 C 0.09 3.33 4.80 86.30 0.41 3.74 16 27 C -0.16 -5.48 4.97 -10.79 -0.05 -5.53 16 28 C -0.18 -5.47 10.00 30.62 0.31 -5.17 16 29 C -0.16 -4.18 10.25 30.62 0.31 -3.87 16 30 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 31 H 0.04 1.70 5.78 -2.39 -0.01 1.69 16 32 H -0.01 -0.28 7.61 -2.39 -0.02 -0.29 16 33 H 0.08 2.30 8.12 -2.39 -0.02 2.28 16 34 H 0.09 3.74 7.33 -2.39 -0.02 3.73 16 35 H 0.41 7.76 8.58 -92.70 -0.80 6.97 16 36 H 0.09 1.14 8.11 -2.39 -0.02 1.12 16 37 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.15 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.15 2.66 8.06 -2.91 -0.02 2.64 16 41 H 0.15 2.67 8.06 -2.91 -0.02 2.65 16 42 H 0.12 3.54 8.06 -2.91 -0.02 3.51 16 43 H 0.11 4.25 4.70 -2.91 -0.01 4.24 16 44 H 0.08 2.87 5.81 -2.39 -0.01 2.86 16 45 H 0.03 1.01 7.79 -2.39 -0.02 0.99 16 46 H 0.08 3.37 8.14 -2.39 -0.02 3.35 16 47 H 0.10 2.66 8.03 -2.39 -0.02 2.64 16 48 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 49 H 0.10 2.45 8.14 -2.39 -0.02 2.44 16 50 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 Total: -1.00 -75.58 396.70 0.07 -75.50 By element: Atomic # 1 Polarization: 34.09 SS G_CDS: 0.09 Total: 34.18 kcal Atomic # 6 Polarization: -26.32 SS G_CDS: 4.67 Total: -21.64 kcal Atomic # 7 Polarization: -99.06 SS G_CDS: -5.60 Total: -104.65 kcal Atomic # 8 Polarization: -27.88 SS G_CDS: -0.98 Total: -28.86 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 1.89 Total: 45.48 kcal Total: -75.58 0.07 -75.50 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081043875.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.366 kcal (2) G-P(sol) polarization free energy of solvation -75.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds