Wall clock time and date at job start Wed Apr 1 2020 02:42:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 119.99974 * 2 1 4 4 H 1.48494 * 109.47349 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47205 * 300.00233 * 3 2 1 6 6 H 1.48505 * 109.46961 * 60.00166 * 3 2 1 7 7 C 1.37876 * 119.99700 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99459 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00496 * 0.02562 * 7 2 1 10 10 N 1.46894 * 109.47647 * 175.53598 * 9 7 2 11 11 C 1.46900 * 111.00205 * 75.57788 * 10 9 7 12 12 C 1.50696 * 109.47252 * 190.00375 * 11 10 9 13 13 O 1.21278 * 120.00129 * 359.97438 * 12 11 10 14 14 N 1.34776 * 119.99728 * 180.02562 * 12 11 10 15 15 C 1.46503 * 119.99937 * 179.97438 * 14 12 11 16 16 H 1.09008 * 109.40021 * 35.10839 * 15 14 12 17 17 C 1.53069 * 109.43610 * 155.00024 * 15 14 12 18 18 C 1.53420 * 108.30013 * 168.22511 * 17 15 14 19 19 O 1.42836 * 108.35801 * 295.25083 * 18 17 15 20 20 C 1.35845 * 117.84887 * 49.20442 * 19 18 17 21 21 C 1.39142 * 118.48875 * 162.90305 * 20 19 18 22 22 C 1.37969 * 120.21405 * 179.78667 * 21 20 19 23 23 C 1.38294 * 119.95434 * 0.02562 * 22 21 20 24 24 C 1.38108 * 119.98545 * 0.09194 * 23 22 21 25 25 C 1.38369 * 121.81037 * 342.85187 * 20 19 18 26 26 C 1.46897 * 111.00400 * 199.53928 * 10 9 7 27 27 C 1.52999 * 109.47238 * 71.95380 * 26 10 9 28 28 C 1.52995 * 117.49991 * 243.79657 * 27 26 10 29 29 C 1.52998 * 60.00389 * 252.51268 * 28 27 26 30 30 H 0.96994 * 119.99830 * 359.97438 * 1 2 3 31 31 H 1.09005 * 109.47032 * 55.53378 * 9 7 2 32 32 H 1.09001 * 109.46960 * 295.53662 * 9 7 2 33 33 H 1.08996 * 109.47127 * 70.00340 * 11 10 9 34 34 H 1.09003 * 109.47384 * 310.00797 * 11 10 9 35 35 H 0.96997 * 120.00528 * 0.02562 * 14 12 11 36 36 H 1.08994 * 109.70006 * 48.52226 * 17 15 14 37 37 H 1.09004 * 109.73018 * 287.94208 * 17 15 14 38 38 H 1.08990 * 109.68407 * 175.53534 * 18 17 15 39 39 H 1.08999 * 109.71388 * 54.98065 * 18 17 15 40 40 H 1.08003 * 119.89596 * 359.79788 * 21 20 19 41 41 H 1.08001 * 120.02684 * 180.02562 * 22 21 20 42 42 H 1.08005 * 120.00630 * 180.11840 * 23 22 21 43 43 H 1.07999 * 119.83967 * 179.97438 * 24 23 22 44 44 H 1.09006 * 109.47045 * 191.95881 * 26 10 9 45 45 H 1.09005 * 109.46619 * 311.95313 * 26 10 9 46 46 H 1.08994 * 115.54985 * 29.51338 * 27 26 10 47 47 H 1.09004 * 117.50191 * 0.02562 * 28 27 26 48 48 H 1.08996 * 117.50109 * 145.02089 * 28 27 26 49 49 H 1.08991 * 117.50352 * 252.51001 * 29 28 27 50 50 H 1.08998 * 117.49911 * 107.48710 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 7 2.2020 -3.6136 -0.1099 11 6 2.8912 -3.8434 1.1669 12 6 4.0224 -4.8171 0.9590 13 8 4.2334 -5.2749 -0.1441 14 7 4.7989 -5.1799 1.9991 15 6 5.8983 -6.1269 1.7971 16 1 6.3408 -5.9638 0.8144 17 6 6.9616 -5.9108 2.8768 18 6 7.9439 -7.0883 2.8282 19 8 7.2379 -8.2780 3.1835 20 6 6.0579 -8.5265 2.5580 21 6 5.5389 -9.8165 2.6083 22 6 4.3407 -10.1074 1.9891 23 6 3.6526 -9.1148 1.3156 24 6 4.1661 -7.8338 1.2617 25 6 5.3686 -7.5360 1.8810 26 6 1.5308 -4.8353 -0.5733 27 6 1.1712 -4.6896 -2.0533 28 6 -0.3132 -4.6961 -2.4235 29 6 0.5632 -5.9054 -2.7556 30 1 -0.4849 0.8400 0.0004 31 1 0.5661 -2.5225 -0.8493 32 1 0.6854 -2.5929 0.9253 33 1 2.1873 -4.2535 1.8910 34 1 3.2882 -2.8996 1.5406 35 1 4.6294 -4.8147 2.8816 36 1 6.4867 -5.8687 3.8570 37 1 7.4950 -4.9793 2.6867 38 1 8.7560 -6.9183 3.5349 39 1 8.3483 -7.1883 1.8210 40 1 6.0755 -10.5926 3.1338 41 1 3.9404 -11.1097 2.0303 42 1 2.7137 -9.3411 0.8322 43 1 3.6269 -7.0605 0.7347 44 1 2.1977 -5.6877 -0.4436 45 1 0.6221 -4.9932 0.0076 46 1 1.8331 -4.0501 -2.6371 47 1 -1.0338 -4.8038 -1.6127 48 1 -0.6284 -4.0605 -3.2510 49 1 0.8248 -6.0655 -3.8015 50 1 0.4194 -6.8090 -2.1632 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081043876.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:42:53 Heat of formation + Delta-G solvation = -10.429632 kcal Electronic energy + Delta-G solvation = -30718.237576 eV Core-core repulsion = 26711.675922 eV Total energy + Delta-G solvation = -4006.561653 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.11838 -39.43412 -37.61633 -37.43691 -35.69335 -34.94786 -32.49285 -32.14056 -30.74929 -30.26872 -28.03221 -27.58680 -25.38652 -24.07453 -23.72738 -22.48766 -21.89353 -21.28587 -20.39868 -20.11792 -19.50398 -17.97679 -17.11876 -16.59741 -16.55821 -16.39022 -15.85197 -15.42714 -15.17334 -14.74425 -14.58622 -14.35013 -14.24539 -13.90829 -13.70010 -13.56761 -13.40482 -13.29916 -12.78934 -12.62171 -12.23673 -12.18299 -11.90897 -11.64318 -11.50944 -11.32166 -11.24381 -11.08195 -11.03941 -10.81998 -10.74411 -10.70459 -10.63514 -10.00608 -9.78317 -9.56946 -9.28748 -9.08732 -9.01779 -8.85271 -8.42848 -8.30225 -7.27603 -6.02970 -4.04301 1.18125 1.33822 2.92838 3.01453 3.21708 3.29607 3.37700 3.42158 3.72450 4.29052 4.31996 4.42233 4.42741 4.51824 4.74433 4.81454 4.86830 4.96914 5.10212 5.15652 5.27159 5.32506 5.32800 5.36178 5.38215 5.42634 5.46400 5.63253 5.67135 5.72531 5.83389 5.92001 6.00558 6.03936 6.08446 6.16596 6.23280 6.32505 6.34651 6.41599 6.49692 6.56137 6.58680 6.66283 6.89912 7.19922 7.25979 7.33285 7.58434 7.81048 8.09557 8.16745 8.48126 8.54997 9.03503 9.59874 11.07335 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.011567 B = 0.003157 C = 0.002586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2420.160203 B = 8866.412049 C =10824.622536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.895 3.105 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.286 1.286 7 C -0.505 4.505 8 H 0.062 0.938 9 C 0.193 3.807 10 N -0.515 5.515 11 C 0.045 3.955 12 C 0.515 3.485 13 O -0.515 6.515 14 N -0.732 5.732 15 C 0.192 3.808 16 H 0.100 0.900 17 C -0.167 4.167 18 C 0.066 3.934 19 O -0.318 6.318 20 C 0.134 3.866 21 C -0.157 4.157 22 C -0.085 4.085 23 C -0.156 4.156 24 C -0.066 4.066 25 C -0.173 4.173 26 C 0.086 3.914 27 C -0.120 4.120 28 C -0.182 4.182 29 C -0.188 4.188 30 H 0.260 0.740 31 H 0.044 0.956 32 H -0.012 1.012 33 H 0.049 0.951 34 H 0.112 0.888 35 H 0.401 0.599 36 H 0.084 0.916 37 H 0.093 0.907 38 H 0.112 0.888 39 H 0.068 0.932 40 H 0.128 0.872 41 H 0.126 0.874 42 H 0.123 0.877 43 H 0.136 0.864 44 H 0.074 0.926 45 H 0.018 0.982 46 H 0.111 0.889 47 H 0.088 0.912 48 H 0.089 0.911 49 H 0.087 0.913 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.952 -17.372 6.760 21.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.723 3.277 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.212 1.212 7 C -0.544 4.544 8 H 0.080 0.920 9 C 0.068 3.932 10 N -0.239 5.239 11 C -0.086 4.086 12 C 0.302 3.698 13 O -0.389 6.389 14 N -0.385 5.385 15 C 0.087 3.913 16 H 0.118 0.882 17 C -0.205 4.205 18 C -0.009 4.009 19 O -0.232 6.232 20 C 0.089 3.911 21 C -0.176 4.176 22 C -0.104 4.104 23 C -0.174 4.174 24 C -0.084 4.084 25 C -0.175 4.175 26 C -0.042 4.042 27 C -0.138 4.138 28 C -0.219 4.219 29 C -0.226 4.226 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.006 0.994 33 H 0.067 0.933 34 H 0.130 0.870 35 H 0.235 0.765 36 H 0.102 0.898 37 H 0.112 0.888 38 H 0.130 0.870 39 H 0.086 0.914 40 H 0.146 0.854 41 H 0.144 0.856 42 H 0.141 0.859 43 H 0.153 0.847 44 H 0.092 0.908 45 H 0.036 0.964 46 H 0.129 0.871 47 H 0.106 0.894 48 H 0.108 0.892 49 H 0.106 0.894 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 11.384 -17.521 5.721 21.663 hybrid contribution -0.423 1.177 0.891 1.536 sum 10.961 -16.344 6.612 20.760 Atomic orbital electron populations 1.69966 1.05998 1.26602 1.51119 1.24971 0.94830 0.99196 0.95530 0.86489 0.80101 0.83614 0.77488 1.19715 1.21037 1.21189 1.21203 0.93494 0.89935 1.49776 0.91965 1.19826 0.90038 0.86946 0.96363 1.61800 1.31868 1.05354 1.24928 1.21883 0.94051 0.98842 0.93852 1.21188 0.83192 0.81396 0.84005 1.90666 1.69954 1.54351 1.23955 1.46132 1.33034 1.46896 1.12470 1.19545 0.86830 0.84860 1.00105 0.88209 1.22508 0.97704 1.00177 1.00086 1.22938 0.93710 0.82164 1.02105 1.85979 1.32158 1.43236 1.61870 1.18693 0.85923 0.93164 0.93317 1.20526 0.98174 0.94087 1.04797 1.20943 0.93936 0.99283 0.96203 1.21101 1.01004 0.93347 1.01970 1.21351 0.94293 0.97214 0.95588 1.20241 0.97953 0.95464 1.03869 1.21676 0.95959 0.93723 0.92830 1.22145 0.95243 0.99820 0.96614 1.22976 0.94546 1.00965 1.03369 1.22900 1.06067 0.92865 1.00766 0.93020 0.93749 0.99411 0.93298 0.87014 0.76515 0.89771 0.88826 0.87040 0.91417 0.85445 0.85592 0.85946 0.84677 0.90769 0.96407 0.87083 0.89375 0.89250 0.89436 0.89661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.11 13.29 55.43 0.74 -25.37 16 2 C 0.06 1.55 5.46 -17.82 -0.10 1.46 16 3 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 4 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 5 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.51 -13.80 8.60 -34.44 -0.30 -14.10 16 8 H 0.06 1.70 7.66 -52.49 -0.40 1.30 16 9 C 0.19 4.86 4.59 -4.98 -0.02 4.84 16 10 N -0.51 -10.97 4.12 -237.52 -0.98 -11.95 16 11 C 0.05 0.81 5.27 -4.98 -0.03 0.78 16 12 C 0.51 8.25 5.96 -10.99 -0.07 8.18 16 13 O -0.51 -9.75 12.39 5.56 0.07 -9.68 16 14 N -0.73 -8.90 4.87 -54.86 -0.27 -9.17 16 15 C 0.19 2.20 2.70 -69.01 -0.19 2.01 16 16 H 0.10 1.31 7.58 -51.92 -0.39 0.92 16 17 C -0.17 -1.35 5.67 -26.48 -0.15 -1.50 16 18 C 0.07 0.51 7.03 37.37 0.26 0.77 16 19 O -0.32 -3.40 10.27 -19.25 -0.20 -3.60 16 20 C 0.13 1.60 6.47 -39.20 -0.25 1.34 16 21 C -0.16 -1.71 9.94 -39.34 -0.39 -2.10 16 22 C -0.09 -0.89 10.04 -39.66 -0.40 -1.29 16 23 C -0.16 -1.85 10.04 -39.61 -0.40 -2.25 16 24 C -0.07 -0.90 9.07 -39.53 -0.36 -1.26 16 25 C -0.17 -2.18 5.56 -104.44 -0.58 -2.76 16 26 C 0.09 1.65 4.80 -3.83 -0.02 1.63 16 27 C -0.12 -2.22 4.97 -90.62 -0.45 -2.67 16 28 C -0.18 -3.06 9.99 -26.73 -0.27 -3.33 16 29 C -0.19 -2.87 10.25 -26.73 -0.27 -3.14 16 30 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 31 H 0.04 1.21 6.97 -51.93 -0.36 0.85 16 32 H -0.01 -0.31 8.00 -51.93 -0.42 -0.73 16 33 H 0.05 0.80 8.12 -51.93 -0.42 0.38 16 34 H 0.11 2.04 7.32 -51.93 -0.38 1.66 16 35 H 0.40 3.91 8.58 -40.82 -0.35 3.56 16 36 H 0.08 0.65 8.11 -51.93 -0.42 0.23 16 37 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.13 1.16 8.06 -52.48 -0.42 0.73 16 41 H 0.13 0.97 8.06 -52.49 -0.42 0.54 16 42 H 0.12 1.27 8.06 -52.48 -0.42 0.85 16 43 H 0.14 2.09 4.35 -52.49 -0.23 1.86 16 44 H 0.07 1.38 5.49 -51.93 -0.28 1.09 16 45 H 0.02 0.34 7.79 -51.93 -0.40 -0.07 16 46 H 0.11 2.28 8.14 -51.93 -0.42 1.86 16 47 H 0.09 1.48 8.03 -51.93 -0.42 1.06 16 48 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 49 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 50 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 LS Contribution 399.69 15.07 6.02 6.02 Total: -1.00 -32.09 399.69 -11.45 -43.54 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: -7.84 Total: 7.34 kcal Atomic # 6 Polarization: -9.43 SS G_CDS: -3.97 Total: -13.40 kcal Atomic # 7 Polarization: -45.98 SS G_CDS: -0.51 Total: -46.49 kcal Atomic # 8 Polarization: -13.16 SS G_CDS: -0.13 Total: -13.29 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -32.09 -11.45 -43.54 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081043876.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.111 kcal (2) G-P(sol) polarization free energy of solvation -32.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds