Wall clock time and date at job start Wed Apr 1 2020 02:42:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 119.99974 * 2 1 4 4 H 1.48494 * 109.47349 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47205 * 300.00233 * 3 2 1 6 6 H 1.48505 * 109.46961 * 60.00166 * 3 2 1 7 7 C 1.37876 * 119.99700 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99459 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00496 * 0.02562 * 7 2 1 10 10 N 1.46894 * 109.47647 * 175.53598 * 9 7 2 11 11 C 1.46900 * 111.00205 * 75.57788 * 10 9 7 12 12 C 1.50696 * 109.47252 * 190.00375 * 11 10 9 13 13 O 1.21278 * 120.00129 * 359.97438 * 12 11 10 14 14 N 1.34776 * 119.99728 * 180.02562 * 12 11 10 15 15 C 1.46503 * 119.99937 * 179.97438 * 14 12 11 16 16 H 1.09008 * 109.40021 * 35.10839 * 15 14 12 17 17 C 1.53069 * 109.43610 * 155.00024 * 15 14 12 18 18 C 1.53420 * 108.30013 * 168.22511 * 17 15 14 19 19 O 1.42836 * 108.35801 * 295.25083 * 18 17 15 20 20 C 1.35845 * 117.84887 * 49.20442 * 19 18 17 21 21 C 1.39142 * 118.48875 * 162.90305 * 20 19 18 22 22 C 1.37969 * 120.21405 * 179.78667 * 21 20 19 23 23 C 1.38294 * 119.95434 * 0.02562 * 22 21 20 24 24 C 1.38108 * 119.98545 * 0.09194 * 23 22 21 25 25 C 1.38369 * 121.81037 * 342.85187 * 20 19 18 26 26 C 1.46897 * 111.00400 * 199.53928 * 10 9 7 27 27 C 1.52999 * 109.47238 * 71.95380 * 26 10 9 28 28 C 1.52995 * 117.49991 * 243.79657 * 27 26 10 29 29 C 1.52998 * 60.00389 * 252.51268 * 28 27 26 30 30 H 0.96994 * 119.99830 * 359.97438 * 1 2 3 31 31 H 1.09005 * 109.47032 * 55.53378 * 9 7 2 32 32 H 1.09001 * 109.46960 * 295.53662 * 9 7 2 33 33 H 1.08996 * 109.47127 * 70.00340 * 11 10 9 34 34 H 1.09003 * 109.47384 * 310.00797 * 11 10 9 35 35 H 0.96997 * 120.00528 * 0.02562 * 14 12 11 36 36 H 1.08994 * 109.70006 * 48.52226 * 17 15 14 37 37 H 1.09004 * 109.73018 * 287.94208 * 17 15 14 38 38 H 1.08990 * 109.68407 * 175.53534 * 18 17 15 39 39 H 1.08999 * 109.71388 * 54.98065 * 18 17 15 40 40 H 1.08003 * 119.89596 * 359.79788 * 21 20 19 41 41 H 1.08001 * 120.02684 * 180.02562 * 22 21 20 42 42 H 1.08005 * 120.00630 * 180.11840 * 23 22 21 43 43 H 1.07999 * 119.83967 * 179.97438 * 24 23 22 44 44 H 1.09006 * 109.47045 * 191.95881 * 26 10 9 45 45 H 1.09005 * 109.46619 * 311.95313 * 26 10 9 46 46 H 1.08994 * 115.54985 * 29.51338 * 27 26 10 47 47 H 1.09004 * 117.50191 * 0.02562 * 28 27 26 48 48 H 1.08996 * 117.50109 * 145.02089 * 28 27 26 49 49 H 1.08991 * 117.50352 * 252.51001 * 29 28 27 50 50 H 1.08998 * 117.49911 * 107.48710 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 7 2.2020 -3.6136 -0.1099 11 6 2.8912 -3.8434 1.1669 12 6 4.0224 -4.8171 0.9590 13 8 4.2334 -5.2749 -0.1441 14 7 4.7989 -5.1799 1.9991 15 6 5.8983 -6.1269 1.7971 16 1 6.3408 -5.9638 0.8144 17 6 6.9616 -5.9108 2.8768 18 6 7.9439 -7.0883 2.8282 19 8 7.2379 -8.2780 3.1835 20 6 6.0579 -8.5265 2.5580 21 6 5.5389 -9.8165 2.6083 22 6 4.3407 -10.1074 1.9891 23 6 3.6526 -9.1148 1.3156 24 6 4.1661 -7.8338 1.2617 25 6 5.3686 -7.5360 1.8810 26 6 1.5308 -4.8353 -0.5733 27 6 1.1712 -4.6896 -2.0533 28 6 -0.3132 -4.6961 -2.4235 29 6 0.5632 -5.9054 -2.7556 30 1 -0.4849 0.8400 0.0004 31 1 0.5661 -2.5225 -0.8493 32 1 0.6854 -2.5929 0.9253 33 1 2.1873 -4.2535 1.8910 34 1 3.2882 -2.8996 1.5406 35 1 4.6294 -4.8147 2.8816 36 1 6.4867 -5.8687 3.8570 37 1 7.4950 -4.9793 2.6867 38 1 8.7560 -6.9183 3.5349 39 1 8.3483 -7.1883 1.8210 40 1 6.0755 -10.5926 3.1338 41 1 3.9404 -11.1097 2.0303 42 1 2.7137 -9.3411 0.8322 43 1 3.6269 -7.0605 0.7347 44 1 2.1977 -5.6877 -0.4436 45 1 0.6221 -4.9932 0.0076 46 1 1.8331 -4.0501 -2.6371 47 1 -1.0338 -4.8038 -1.6127 48 1 -0.6284 -4.0605 -3.2510 49 1 0.8248 -6.0655 -3.8015 50 1 0.4194 -6.8090 -2.1632 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081043876.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:42:51 Heat of formation + Delta-G solvation = -30.231511 kcal Electronic energy + Delta-G solvation = -30719.096250 eV Core-core repulsion = 26711.675922 eV Total energy + Delta-G solvation = -4007.420327 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.02506 -40.67059 -38.90876 -38.40664 -36.94259 -36.36861 -34.54856 -33.15211 -31.55703 -31.14546 -29.72640 -29.22779 -26.48281 -25.62222 -24.64853 -23.50465 -23.18375 -22.90431 -21.53139 -21.21256 -20.93502 -18.84325 -18.51416 -18.24495 -17.60857 -17.45849 -16.94582 -16.82968 -16.46572 -16.12602 -15.78543 -15.65145 -15.43195 -15.19382 -14.94382 -14.71101 -14.53729 -14.19858 -14.12038 -14.10854 -13.51009 -13.44184 -13.22060 -12.96925 -12.94784 -12.63657 -12.54236 -12.42109 -12.35836 -12.26761 -12.23335 -11.95872 -11.77353 -11.63614 -11.40102 -11.09447 -10.91573 -10.61990 -10.45060 -10.18039 -9.79699 -9.16175 -9.00563 -8.16626 -6.26140 0.30201 0.44320 1.40927 1.43047 1.55407 1.63571 2.03239 2.36207 2.42285 2.82044 2.94168 3.15265 3.30354 3.52331 3.61804 3.75909 3.83108 3.95971 4.03305 4.07370 4.17278 4.19920 4.21226 4.35958 4.38296 4.49835 4.50988 4.54320 4.57070 4.61425 4.66750 4.70731 4.76337 4.86716 4.93270 4.96331 5.02377 5.07007 5.19151 5.25219 5.28812 5.31319 5.36926 5.42685 5.53948 5.62933 5.69424 5.82582 6.09884 6.26968 6.45351 6.54745 6.63637 6.88801 7.27741 7.43004 8.93648 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.011567 B = 0.003157 C = 0.002586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2420.160203 B = 8866.412049 C =10824.622536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.005 3.995 3 Si 0.964 3.036 4 H -0.265 1.265 5 H -0.283 1.283 6 H -0.276 1.276 7 C -0.518 4.518 8 H 0.058 0.942 9 C 0.213 3.787 10 N -0.528 5.528 11 C 0.044 3.956 12 C 0.523 3.477 13 O -0.547 6.547 14 N -0.713 5.713 15 C 0.191 3.809 16 H 0.079 0.921 17 C -0.158 4.158 18 C 0.062 3.938 19 O -0.324 6.324 20 C 0.128 3.872 21 C -0.162 4.162 22 C -0.080 4.080 23 C -0.167 4.167 24 C -0.090 4.090 25 C -0.186 4.186 26 C 0.095 3.905 27 C -0.151 4.151 28 C -0.185 4.185 29 C -0.154 4.154 30 H 0.263 0.737 31 H 0.017 0.983 32 H -0.034 1.034 33 H 0.063 0.937 34 H 0.105 0.895 35 H 0.414 0.586 36 H 0.092 0.908 37 H 0.111 0.889 38 H 0.144 0.856 39 H 0.069 0.931 40 H 0.148 0.852 41 H 0.156 0.844 42 H 0.132 0.868 43 H 0.112 0.888 44 H 0.080 0.920 45 H 0.016 0.984 46 H 0.084 0.916 47 H 0.087 0.913 48 H 0.090 0.910 49 H 0.106 0.894 50 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.672 -18.576 7.960 23.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.193 4.193 3 Si 0.789 3.211 4 H -0.189 1.189 5 H -0.209 1.209 6 H -0.202 1.202 7 C -0.557 4.557 8 H 0.076 0.924 9 C 0.087 3.913 10 N -0.253 5.253 11 C -0.088 4.088 12 C 0.310 3.690 13 O -0.424 6.424 14 N -0.366 5.366 15 C 0.086 3.914 16 H 0.097 0.903 17 C -0.196 4.196 18 C -0.013 4.013 19 O -0.239 6.239 20 C 0.083 3.917 21 C -0.180 4.180 22 C -0.098 4.098 23 C -0.185 4.185 24 C -0.109 4.109 25 C -0.188 4.188 26 C -0.033 4.033 27 C -0.169 4.169 28 C -0.222 4.222 29 C -0.192 4.192 30 H 0.072 0.928 31 H 0.035 0.965 32 H -0.016 1.016 33 H 0.081 0.919 34 H 0.123 0.877 35 H 0.251 0.749 36 H 0.110 0.890 37 H 0.129 0.871 38 H 0.162 0.838 39 H 0.088 0.912 40 H 0.166 0.834 41 H 0.174 0.826 42 H 0.150 0.850 43 H 0.130 0.870 44 H 0.098 0.902 45 H 0.034 0.966 46 H 0.103 0.897 47 H 0.105 0.895 48 H 0.108 0.892 49 H 0.124 0.876 50 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 13.133 -18.741 6.964 23.921 hybrid contribution -0.933 1.469 0.537 1.822 sum 12.201 -17.271 7.502 22.437 Atomic orbital electron populations 1.70085 1.07544 1.27656 1.51900 1.25819 0.95663 1.02810 0.94983 0.85413 0.78981 0.79037 0.77646 1.18944 1.20879 1.20172 1.21459 0.93417 0.91102 1.49699 0.92354 1.19410 0.89909 0.88076 0.93919 1.61687 1.31106 1.05487 1.26975 1.21885 0.94866 0.99376 0.92639 1.20713 0.83020 0.80929 0.84301 1.90652 1.70772 1.55584 1.25391 1.45906 1.32354 1.46259 1.12103 1.19649 0.86971 0.84251 1.00534 0.90261 1.22500 0.96796 1.01316 0.98966 1.23228 0.93904 0.80833 1.03348 1.85977 1.31646 1.44514 1.61738 1.18849 0.86397 0.93389 0.93095 1.20886 0.98361 0.94263 1.04522 1.21273 0.93450 1.00203 0.94871 1.21300 1.01652 0.93129 1.02407 1.21304 0.95202 0.97612 0.96752 1.20298 0.97974 0.96135 1.04422 1.21624 0.95677 0.92803 0.93158 1.22070 0.96013 1.02554 0.96313 1.22995 0.93466 1.02353 1.03398 1.22988 1.02520 0.92098 1.01564 0.92792 0.96528 1.01593 0.91900 0.87684 0.74937 0.88966 0.87086 0.83806 0.91241 0.83446 0.82594 0.85043 0.87006 0.90205 0.96609 0.89741 0.89489 0.89192 0.87603 0.87881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.35 13.29 21.45 0.28 -55.06 16 2 C 0.01 0.30 5.46 84.65 0.46 0.76 16 3 Si 0.96 44.00 29.54 68.60 2.03 46.02 16 4 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 5 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 6 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 7 C -0.52 -29.09 8.60 25.60 0.22 -28.86 16 8 H 0.06 3.25 7.66 -2.91 -0.02 3.23 16 9 C 0.21 11.22 4.59 85.56 0.39 11.61 16 10 N -0.53 -23.49 4.12 -905.39 -3.73 -27.22 16 11 C 0.04 1.60 5.27 85.56 0.45 2.05 16 12 C 0.52 17.16 5.96 87.66 0.52 17.68 16 13 O -0.55 -21.44 12.39 -3.02 -0.04 -21.48 16 14 N -0.71 -17.20 4.87 -445.87 -2.17 -19.37 16 15 C 0.19 4.28 2.70 44.29 0.12 4.40 16 16 H 0.08 2.12 7.58 -2.38 -0.02 2.10 16 17 C -0.16 -2.23 5.67 30.76 0.17 -2.05 16 18 C 0.06 0.79 7.03 72.12 0.51 1.30 16 19 O -0.32 -6.21 10.27 -91.81 -0.94 -7.15 16 20 C 0.13 2.86 6.47 22.52 0.15 3.00 16 21 C -0.16 -3.18 9.94 22.42 0.22 -2.96 16 22 C -0.08 -1.50 10.04 22.22 0.22 -1.28 16 23 C -0.17 -3.84 10.04 22.25 0.22 -3.61 16 24 C -0.09 -2.49 9.07 22.30 0.20 -2.28 16 25 C -0.19 -4.61 5.56 -19.75 -0.11 -4.72 16 26 C 0.10 3.77 4.80 86.30 0.41 4.19 16 27 C -0.15 -5.79 4.97 -10.79 -0.05 -5.84 16 28 C -0.19 -6.35 9.99 30.59 0.31 -6.04 16 29 C -0.15 -4.57 10.25 30.60 0.31 -4.25 16 30 H 0.26 14.72 8.31 -92.71 -0.77 13.95 16 31 H 0.02 0.96 6.97 -2.38 -0.02 0.94 16 32 H -0.03 -1.87 8.00 -2.39 -0.02 -1.89 16 33 H 0.06 2.11 8.12 -2.39 -0.02 2.09 16 34 H 0.11 3.95 7.32 -2.39 -0.02 3.94 16 35 H 0.41 7.71 8.58 -92.71 -0.80 6.92 16 36 H 0.09 1.19 8.11 -2.39 -0.02 1.17 16 37 H 0.11 1.20 8.14 -2.38 -0.02 1.18 16 38 H 0.14 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.15 2.24 8.06 -2.91 -0.02 2.22 16 41 H 0.16 1.90 8.06 -2.91 -0.02 1.88 16 42 H 0.13 2.65 8.06 -2.91 -0.02 2.63 16 43 H 0.11 3.59 4.35 -2.91 -0.01 3.58 16 44 H 0.08 3.07 5.49 -2.38 -0.01 3.06 16 45 H 0.02 0.62 7.79 -2.38 -0.02 0.60 16 46 H 0.08 3.68 8.14 -2.39 -0.02 3.66 16 47 H 0.09 2.97 8.03 -2.38 -0.02 2.95 16 48 H 0.09 3.03 8.14 -2.39 -0.02 3.01 16 49 H 0.11 2.76 8.14 -2.39 -0.02 2.74 16 50 H 0.10 2.70 8.14 -2.39 -0.02 2.68 16 Total: -1.00 -71.53 399.69 0.32 -71.21 By element: Atomic # 1 Polarization: 29.80 SS G_CDS: 0.15 Total: 29.95 kcal Atomic # 6 Polarization: -21.64 SS G_CDS: 4.74 Total: -16.91 kcal Atomic # 7 Polarization: -96.04 SS G_CDS: -5.61 Total: -101.65 kcal Atomic # 8 Polarization: -27.65 SS G_CDS: -0.98 Total: -28.63 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.02 kcal Total: -71.53 0.32 -71.21 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081043876.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.979 kcal (2) G-P(sol) polarization free energy of solvation -71.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds