Wall clock time and date at job start Wed Apr 1 2020 03:50:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86795 * 119.99959 * 2 1 4 4 H 1.48499 * 109.47264 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47375 * 300.00329 * 3 2 1 6 6 H 1.48506 * 109.47301 * 60.00327 * 3 2 1 7 7 C 1.38663 * 120.00220 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99731 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99751 * 359.97438 * 7 2 1 10 10 C 1.35750 * 117.00075 * 174.94575 * 9 7 2 11 11 C 1.38874 * 120.06878 * 185.26035 * 10 9 7 12 12 C 1.38112 * 119.92511 * 179.67938 * 11 10 9 13 13 C 1.38301 * 120.06988 * 0.61755 * 12 11 10 14 14 C 1.50695 * 119.93114 * 179.70420 * 13 12 11 15 15 C 1.50705 * 109.46992 * 269.97931 * 14 13 12 16 16 O 1.21287 * 119.99956 * 359.97438 * 15 14 13 17 17 N 1.34775 * 120.00246 * 180.02562 * 15 14 13 18 18 C 1.46495 * 120.00172 * 179.97438 * 17 15 14 19 19 C 1.53114 * 109.52350 * 274.87270 * 18 17 15 20 20 C 1.53047 * 109.27342 * 182.50445 * 19 18 17 21 21 N 1.46845 * 109.57637 * 59.08315 * 20 19 18 22 22 C 1.46905 * 111.00026 * 174.18905 * 21 20 19 23 23 C 1.53004 * 117.49622 * 12.83439 * 22 21 20 24 24 C 1.52994 * 117.49891 * 304.21421 * 22 21 20 25 25 C 1.46845 * 111.19753 * 298.28968 * 21 20 19 26 26 C 1.53036 * 109.52397 * 61.74182 * 25 21 20 27 27 C 1.38299 * 120.13638 * 359.68146 * 13 12 11 28 28 C 1.38101 * 120.07425 * 359.97438 * 27 13 12 29 29 H 0.96996 * 120.00178 * 359.97438 * 1 2 3 30 30 H 1.07996 * 120.03745 * 0.02562 * 11 10 9 31 31 H 1.08003 * 119.96174 * 180.31972 * 12 11 10 32 32 H 1.08998 * 109.47086 * 29.97216 * 14 13 12 33 33 H 1.08996 * 109.47192 * 149.97791 * 14 13 12 34 34 H 0.97005 * 119.99604 * 359.97438 * 17 15 14 35 35 H 1.09002 * 109.52244 * 35.00110 * 18 17 15 36 36 H 1.09003 * 109.50279 * 302.37819 * 19 18 17 37 37 H 1.08993 * 109.50387 * 62.50081 * 19 18 17 38 38 H 1.08999 * 109.40995 * 299.06925 * 20 19 18 39 39 H 1.08999 * 109.44993 * 179.12918 * 20 19 18 40 40 H 1.08994 * 115.54751 * 158.53793 * 22 21 20 41 41 H 1.08999 * 117.49654 * 359.97438 * 23 22 21 42 42 H 1.09005 * 117.49398 * 145.01796 * 23 22 21 43 43 H 1.09007 * 117.49798 * 214.97661 * 24 22 21 44 44 H 1.08997 * 117.50247 * 359.97438 * 24 22 21 45 45 H 1.08998 * 109.46467 * 301.72381 * 25 21 20 46 46 H 1.09008 * 109.45126 * 181.75073 * 25 21 20 47 47 H 1.09001 * 109.50177 * 180.87539 * 26 25 21 48 48 H 1.09006 * 109.53378 * 60.78068 * 26 25 21 49 49 H 1.07999 * 119.96503 * 180.02562 * 27 13 12 50 50 H 1.07992 * 120.03608 * 180.02562 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.7095 1.3464 -0.0006 5 1 1.8908 2.3964 -1.2124 6 1 1.8908 2.3964 1.2126 7 6 2.0089 -1.2008 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3348 -2.3685 -0.0005 10 6 2.0700 -3.5046 -0.1076 11 6 1.4365 -4.7349 -0.2242 12 6 2.1874 -5.8883 -0.3396 13 6 3.5687 -5.8202 -0.3264 14 6 4.3849 -7.0813 -0.4459 15 6 4.6507 -7.6397 0.9284 16 8 4.2201 -7.0694 1.9084 17 7 5.3677 -8.7723 1.0686 18 6 5.6266 -9.3147 2.4046 19 6 6.8626 -8.6364 3.0016 20 6 7.1646 -9.2511 4.3703 21 7 7.3979 -10.6932 4.2213 22 6 7.8257 -11.2915 5.4930 23 6 7.6662 -10.4479 6.7595 24 6 9.0584 -10.6949 6.1751 25 6 6.2072 -11.3721 3.6945 26 6 5.8775 -10.8219 2.3050 27 6 4.2024 -4.5970 -0.2043 28 6 3.4573 -3.4394 -0.0956 29 1 -0.4850 0.8400 0.0004 30 1 0.3579 -4.7892 -0.2301 31 1 1.6954 -6.8450 -0.4355 32 1 3.8358 -7.8149 -1.0361 33 1 5.3320 -6.8560 -0.9360 34 1 5.7124 -9.2282 0.2848 35 1 4.7646 -9.1306 3.0458 36 1 7.7157 -8.7870 2.3399 37 1 6.6730 -7.5691 3.1148 38 1 6.3172 -9.0872 5.0359 39 1 8.0533 -8.7809 4.7912 40 1 7.6724 -12.3670 5.5816 41 1 7.2443 -9.4490 6.6490 42 1 7.4078 -10.9686 7.6817 43 1 9.7161 -11.3779 6.7129 44 1 9.5523 -9.8588 5.6801 45 1 5.3643 -11.1983 4.3633 46 1 6.4007 -12.4426 3.6247 47 1 4.9846 -11.3150 1.9208 48 1 6.7142 -11.0078 1.6315 49 1 5.2812 -4.5470 -0.1947 50 1 3.9527 -2.4845 -0.0006 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000110614110.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:50:57 Heat of formation + Delta-G solvation = -9.500146 kcal Electronic energy + Delta-G solvation = -29036.767008 eV Core-core repulsion = 25030.245660 eV Total energy + Delta-G solvation = -4006.521348 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -40.39925 -39.46709 -38.72046 -36.91990 -36.26318 -34.05361 -32.44493 -31.61373 -31.22303 -30.29560 -30.08015 -26.70199 -25.20015 -24.31202 -23.63558 -22.78928 -21.91797 -21.34206 -20.89480 -20.18287 -19.68605 -17.93064 -17.35230 -16.91842 -16.79217 -16.20694 -15.78047 -15.31572 -14.79961 -14.61548 -14.47385 -14.28942 -14.22611 -14.05267 -13.68247 -13.59415 -13.41488 -13.29221 -12.75796 -12.65500 -12.53396 -12.42073 -12.03381 -11.93463 -11.81603 -11.50400 -11.43422 -11.27588 -11.22833 -11.06932 -10.87023 -10.77520 -10.69858 -10.66308 -10.55812 -10.38491 -9.64070 -9.27416 -9.09460 -8.78243 -8.54904 -8.09356 -7.10792 -6.40620 -3.98963 2.30269 2.31885 2.81301 3.12645 3.16453 3.18366 3.22157 3.23052 3.62373 4.00548 4.28096 4.42605 4.48892 4.55610 4.57626 4.61661 4.77136 4.86528 4.98631 5.00638 5.13719 5.15775 5.20734 5.25224 5.29472 5.31137 5.34678 5.37350 5.39812 5.46427 5.55203 5.64338 5.70227 5.71545 5.72523 5.78531 5.84927 5.90677 6.01553 6.27151 6.43573 6.47501 6.63283 6.68171 6.76021 6.97158 7.10933 7.29494 7.42736 7.49026 7.52731 7.89781 8.05032 8.37598 9.05287 9.76609 10.77700 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.017452 B = 0.001837 C = 0.001729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1604.035934 B =15238.639148 C =16194.656448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.038 3.962 3 Si 0.941 3.059 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.390 4.390 8 H 0.092 0.908 9 O -0.179 6.179 10 C 0.156 3.844 11 C -0.192 4.192 12 C -0.060 4.060 13 C -0.169 4.169 14 C -0.080 4.080 15 C 0.509 3.491 16 O -0.520 6.520 17 N -0.736 5.736 18 C 0.145 3.855 19 C -0.127 4.127 20 C 0.053 3.947 21 N -0.507 5.507 22 C 0.022 3.978 23 C -0.222 4.222 24 C -0.171 4.171 25 C 0.061 3.939 26 C -0.123 4.123 27 C -0.057 4.057 28 C -0.232 4.232 29 H 0.269 0.731 30 H 0.116 0.884 31 H 0.108 0.892 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.398 0.602 35 H 0.084 0.916 36 H 0.072 0.928 37 H 0.075 0.925 38 H 0.042 0.958 39 H 0.078 0.922 40 H 0.119 0.881 41 H 0.100 0.900 42 H 0.094 0.906 43 H 0.097 0.903 44 H 0.096 0.904 45 H 0.039 0.961 46 H 0.080 0.920 47 H 0.075 0.925 48 H 0.077 0.923 49 H 0.103 0.897 50 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.486 -24.636 5.445 30.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.166 4.166 3 Si 0.766 3.234 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.466 4.466 8 H 0.110 0.890 9 O -0.083 6.083 10 C 0.103 3.897 11 C -0.211 4.211 12 C -0.078 4.078 13 C -0.170 4.170 14 C -0.120 4.120 15 C 0.296 3.704 16 O -0.394 6.394 17 N -0.389 5.389 18 C 0.040 3.960 19 C -0.166 4.166 20 C -0.075 4.075 21 N -0.229 5.229 22 C -0.088 4.088 23 C -0.261 4.261 24 C -0.209 4.209 25 C -0.067 4.067 26 C -0.161 4.161 27 C -0.075 4.075 28 C -0.252 4.252 29 H 0.079 0.921 30 H 0.134 0.866 31 H 0.126 0.874 32 H 0.110 0.890 33 H 0.110 0.890 34 H 0.231 0.769 35 H 0.102 0.898 36 H 0.091 0.909 37 H 0.094 0.906 38 H 0.060 0.940 39 H 0.097 0.903 40 H 0.137 0.863 41 H 0.118 0.882 42 H 0.112 0.888 43 H 0.115 0.885 44 H 0.115 0.885 45 H 0.057 0.943 46 H 0.098 0.902 47 H 0.094 0.906 48 H 0.096 0.904 49 H 0.121 0.879 50 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 16.077 -24.033 5.817 29.494 hybrid contribution 0.125 0.725 0.334 0.808 sum 16.202 -23.308 6.152 29.045 Atomic orbital electron populations 1.70050 1.05936 1.27466 1.46428 1.25289 0.95845 0.98811 0.96673 0.85648 0.79143 0.80433 0.78200 1.19120 1.20178 1.20179 1.21377 0.91824 0.80852 1.52571 0.89043 1.83976 1.34359 1.11463 1.78466 1.19386 0.90286 0.88021 0.92025 1.20154 0.99465 0.90354 1.11128 1.20398 0.92784 0.96573 0.98075 1.18634 0.93203 0.92581 1.12606 1.20409 1.01223 0.96823 0.93552 1.21074 0.77103 0.79803 0.92395 1.90742 1.49654 1.58361 1.40669 1.46145 1.56760 1.27514 1.08520 1.20922 0.97984 0.92277 0.84843 1.21997 0.98156 1.00398 0.96035 1.22182 1.00636 0.87511 0.97123 1.61840 1.33565 1.03132 1.24374 1.22639 1.02315 0.97423 0.86384 1.23584 1.01145 1.02807 0.98607 1.23064 0.91001 1.03740 1.03095 1.22021 0.90982 0.98603 0.95129 1.21867 1.02270 0.94529 0.97461 1.20504 0.98021 0.91841 0.97148 1.21105 0.93804 0.98813 1.11436 0.92137 0.86576 0.87425 0.89032 0.89047 0.76872 0.89819 0.90927 0.90592 0.93994 0.90319 0.86295 0.88177 0.88783 0.88457 0.88511 0.94271 0.90152 0.90646 0.90428 0.87867 0.85612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.84 13.67 55.48 0.76 -25.08 16 2 C 0.04 1.06 5.49 -17.51 -0.10 0.96 16 3 Si 0.94 20.99 29.55 -169.99 -5.02 15.97 16 4 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 5 H -0.28 -6.01 7.11 56.52 0.40 -5.60 16 6 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 7 C -0.39 -11.20 9.49 30.89 0.29 -10.91 16 8 H 0.09 2.44 5.20 -52.49 -0.27 2.17 16 9 O -0.18 -5.29 9.76 0.05 0.00 -5.29 16 10 C 0.16 3.96 6.65 -39.11 -0.26 3.70 16 11 C -0.19 -4.27 9.99 -39.39 -0.39 -4.66 16 12 C -0.06 -1.13 9.69 -39.60 -0.38 -1.51 16 13 C -0.17 -2.99 4.38 -104.58 -0.46 -3.44 16 14 C -0.08 -1.00 5.83 -29.04 -0.17 -1.17 16 15 C 0.51 6.93 7.79 -10.98 -0.09 6.84 16 16 O -0.52 -9.72 15.70 5.55 0.09 -9.63 16 17 N -0.74 -7.00 5.08 -53.69 -0.27 -7.27 16 18 C 0.14 1.36 2.52 -67.81 -0.17 1.19 16 19 C -0.13 -1.22 5.68 -26.65 -0.15 -1.37 16 20 C 0.05 0.46 4.12 -3.83 -0.02 0.45 16 21 N -0.51 -3.92 4.88 -226.69 -1.11 -5.03 16 22 C 0.02 0.15 6.11 -67.71 -0.41 -0.26 16 23 C -0.22 -1.50 9.58 -26.73 -0.26 -1.76 16 24 C -0.17 -1.10 9.93 -26.74 -0.27 -1.37 16 25 C 0.06 0.41 5.44 -3.84 -0.02 0.39 16 26 C -0.12 -0.82 5.57 -26.65 -0.15 -0.97 16 27 C -0.06 -1.10 9.69 -39.61 -0.38 -1.48 16 28 C -0.23 -5.31 9.17 -39.39 -0.36 -5.67 16 29 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 30 H 0.12 2.49 8.06 -52.49 -0.42 2.06 16 31 H 0.11 1.70 8.06 -52.48 -0.42 1.27 16 32 H 0.09 0.91 8.08 -51.93 -0.42 0.49 16 33 H 0.09 0.93 8.08 -51.93 -0.42 0.51 16 34 H 0.40 2.54 8.60 -40.82 -0.35 2.19 16 35 H 0.08 1.01 7.58 -51.93 -0.39 0.61 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.04 0.40 7.12 -51.93 -0.37 0.03 16 39 H 0.08 0.66 6.43 -51.93 -0.33 0.32 16 40 H 0.12 0.68 8.04 -51.93 -0.42 0.26 16 41 H 0.10 0.76 5.97 -51.93 -0.31 0.45 16 42 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.10 0.51 8.14 -51.92 -0.42 0.09 16 44 H 0.10 0.67 7.23 -51.93 -0.38 0.30 16 45 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 46 H 0.08 0.44 8.07 -51.92 -0.42 0.03 16 47 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 48 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 49 H 0.10 1.71 8.06 -52.49 -0.42 1.29 16 50 H 0.13 2.87 5.64 -52.49 -0.30 2.57 16 LS Contribution 402.60 15.07 6.07 6.07 Total: -1.00 -34.43 402.60 -10.97 -45.40 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: -7.74 Total: 5.91 kcal Atomic # 6 Polarization: -17.31 SS G_CDS: -3.74 Total: -21.05 kcal Atomic # 7 Polarization: -36.76 SS G_CDS: -0.62 Total: -37.38 kcal Atomic # 8 Polarization: -15.01 SS G_CDS: 0.09 Total: -14.92 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -34.43 -10.97 -45.40 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110614110.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.905 kcal (2) G-P(sol) polarization free energy of solvation -34.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds