Wall clock time and date at job start Wed Apr 1 2020 03:50:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86795 * 119.99959 * 2 1 4 4 H 1.48499 * 109.47264 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47375 * 300.00329 * 3 2 1 6 6 H 1.48506 * 109.47301 * 60.00327 * 3 2 1 7 7 C 1.38663 * 120.00220 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99731 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99751 * 359.97438 * 7 2 1 10 10 C 1.35750 * 117.00075 * 174.94575 * 9 7 2 11 11 C 1.38874 * 120.06878 * 185.26035 * 10 9 7 12 12 C 1.38112 * 119.92511 * 179.67938 * 11 10 9 13 13 C 1.38301 * 120.06988 * 0.61755 * 12 11 10 14 14 C 1.50695 * 119.93114 * 179.70420 * 13 12 11 15 15 C 1.50705 * 109.46992 * 269.97931 * 14 13 12 16 16 O 1.21287 * 119.99956 * 359.97438 * 15 14 13 17 17 N 1.34775 * 120.00246 * 180.02562 * 15 14 13 18 18 C 1.46495 * 120.00172 * 179.97438 * 17 15 14 19 19 C 1.53114 * 109.52350 * 274.87270 * 18 17 15 20 20 C 1.53047 * 109.27342 * 182.50445 * 19 18 17 21 21 N 1.46845 * 109.57637 * 59.08315 * 20 19 18 22 22 C 1.46905 * 111.00026 * 174.18905 * 21 20 19 23 23 C 1.53004 * 117.49622 * 12.83439 * 22 21 20 24 24 C 1.52994 * 117.49891 * 304.21421 * 22 21 20 25 25 C 1.46845 * 111.19753 * 298.28968 * 21 20 19 26 26 C 1.53036 * 109.52397 * 61.74182 * 25 21 20 27 27 C 1.38299 * 120.13638 * 359.68146 * 13 12 11 28 28 C 1.38101 * 120.07425 * 359.97438 * 27 13 12 29 29 H 0.96996 * 120.00178 * 359.97438 * 1 2 3 30 30 H 1.07996 * 120.03745 * 0.02562 * 11 10 9 31 31 H 1.08003 * 119.96174 * 180.31972 * 12 11 10 32 32 H 1.08998 * 109.47086 * 29.97216 * 14 13 12 33 33 H 1.08996 * 109.47192 * 149.97791 * 14 13 12 34 34 H 0.97005 * 119.99604 * 359.97438 * 17 15 14 35 35 H 1.09002 * 109.52244 * 35.00110 * 18 17 15 36 36 H 1.09003 * 109.50279 * 302.37819 * 19 18 17 37 37 H 1.08993 * 109.50387 * 62.50081 * 19 18 17 38 38 H 1.08999 * 109.40995 * 299.06925 * 20 19 18 39 39 H 1.08999 * 109.44993 * 179.12918 * 20 19 18 40 40 H 1.08994 * 115.54751 * 158.53793 * 22 21 20 41 41 H 1.08999 * 117.49654 * 359.97438 * 23 22 21 42 42 H 1.09005 * 117.49398 * 145.01796 * 23 22 21 43 43 H 1.09007 * 117.49798 * 214.97661 * 24 22 21 44 44 H 1.08997 * 117.50247 * 359.97438 * 24 22 21 45 45 H 1.08998 * 109.46467 * 301.72381 * 25 21 20 46 46 H 1.09008 * 109.45126 * 181.75073 * 25 21 20 47 47 H 1.09001 * 109.50177 * 180.87539 * 26 25 21 48 48 H 1.09006 * 109.53378 * 60.78068 * 26 25 21 49 49 H 1.07999 * 119.96503 * 180.02562 * 27 13 12 50 50 H 1.07992 * 120.03608 * 180.02562 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.7095 1.3464 -0.0006 5 1 1.8908 2.3964 -1.2124 6 1 1.8908 2.3964 1.2126 7 6 2.0089 -1.2008 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3348 -2.3685 -0.0005 10 6 2.0700 -3.5046 -0.1076 11 6 1.4365 -4.7349 -0.2242 12 6 2.1874 -5.8883 -0.3396 13 6 3.5687 -5.8202 -0.3264 14 6 4.3849 -7.0813 -0.4459 15 6 4.6507 -7.6397 0.9284 16 8 4.2201 -7.0694 1.9084 17 7 5.3677 -8.7723 1.0686 18 6 5.6266 -9.3147 2.4046 19 6 6.8626 -8.6364 3.0016 20 6 7.1646 -9.2511 4.3703 21 7 7.3979 -10.6932 4.2213 22 6 7.8257 -11.2915 5.4930 23 6 7.6662 -10.4479 6.7595 24 6 9.0584 -10.6949 6.1751 25 6 6.2072 -11.3721 3.6945 26 6 5.8775 -10.8219 2.3050 27 6 4.2024 -4.5970 -0.2043 28 6 3.4573 -3.4394 -0.0956 29 1 -0.4850 0.8400 0.0004 30 1 0.3579 -4.7892 -0.2301 31 1 1.6954 -6.8450 -0.4355 32 1 3.8358 -7.8149 -1.0361 33 1 5.3320 -6.8560 -0.9360 34 1 5.7124 -9.2282 0.2848 35 1 4.7646 -9.1306 3.0458 36 1 7.7157 -8.7870 2.3399 37 1 6.6730 -7.5691 3.1148 38 1 6.3172 -9.0872 5.0359 39 1 8.0533 -8.7809 4.7912 40 1 7.6724 -12.3670 5.5816 41 1 7.2443 -9.4490 6.6490 42 1 7.4078 -10.9686 7.6817 43 1 9.7161 -11.3779 6.7129 44 1 9.5523 -9.8588 5.6801 45 1 5.3643 -11.1983 4.3633 46 1 6.4007 -12.4426 3.6247 47 1 4.9846 -11.3150 1.9208 48 1 6.7142 -11.0078 1.6315 49 1 5.2812 -4.5470 -0.1947 50 1 3.9527 -2.4845 -0.0006 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000110614110.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:50:56 Heat of formation + Delta-G solvation = -33.008211 kcal Electronic energy + Delta-G solvation = -29037.786394 eV Core-core repulsion = 25030.245660 eV Total energy + Delta-G solvation = -4007.540734 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.29871 -40.73238 -40.05373 -38.29582 -37.36498 -34.88910 -34.39814 -32.95727 -31.94042 -31.77826 -31.17838 -28.21128 -27.04244 -25.13814 -24.32872 -23.63544 -23.31606 -22.52960 -21.77473 -21.24054 -20.48171 -19.84468 -18.86216 -18.02951 -17.75847 -17.06484 -16.62760 -16.40950 -16.33303 -15.91420 -15.86353 -15.52878 -15.32299 -15.13501 -14.92687 -14.79226 -14.67218 -14.38851 -14.21887 -14.06360 -13.60430 -13.35031 -13.11097 -12.98400 -12.78340 -12.61615 -12.56313 -12.47798 -12.27583 -12.25617 -12.10033 -12.03809 -11.96290 -11.67945 -11.51209 -11.20198 -11.18046 -10.88251 -10.70716 -10.00197 -9.76272 -9.15217 -8.89651 -8.48050 -6.16153 0.61435 0.67698 1.33241 1.41917 1.52136 1.76886 2.16953 2.26619 2.63472 2.84887 3.08411 3.18294 3.51745 3.66402 3.78165 3.87978 3.90173 4.00791 4.03922 4.06028 4.14885 4.17844 4.22789 4.23704 4.33555 4.50619 4.52018 4.58464 4.63040 4.65661 4.73455 4.74527 4.78502 4.81319 4.85091 4.94421 5.06845 5.08649 5.09870 5.13909 5.14932 5.21548 5.27643 5.31338 5.56703 5.59427 5.71626 5.78515 6.00429 6.02580 6.11710 6.23646 6.69518 6.96506 7.42040 7.78198 8.75695 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.017452 B = 0.001837 C = 0.001729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1604.035934 B =15238.639148 C =16194.656448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.025 4.025 3 Si 1.021 2.979 4 H -0.252 1.252 5 H -0.265 1.265 6 H -0.269 1.269 7 C -0.413 4.413 8 H 0.100 0.900 9 O -0.234 6.234 10 C 0.111 3.889 11 C -0.207 4.207 12 C -0.058 4.058 13 C -0.144 4.144 14 C -0.078 4.078 15 C 0.511 3.489 16 O -0.582 6.582 17 N -0.713 5.713 18 C 0.145 3.855 19 C -0.121 4.121 20 C 0.059 3.941 21 N -0.508 5.508 22 C 0.017 3.983 23 C -0.229 4.229 24 C -0.168 4.168 25 C 0.058 3.942 26 C -0.112 4.112 27 C -0.061 4.061 28 C -0.245 4.245 29 H 0.273 0.727 30 H 0.112 0.888 31 H 0.147 0.853 32 H 0.132 0.868 33 H 0.128 0.872 34 H 0.418 0.582 35 H 0.053 0.947 36 H 0.082 0.918 37 H 0.046 0.954 38 H 0.026 0.974 39 H 0.078 0.922 40 H 0.136 0.864 41 H 0.086 0.914 42 H 0.102 0.898 43 H 0.112 0.888 44 H 0.089 0.911 45 H 0.029 0.971 46 H 0.101 0.899 47 H 0.089 0.911 48 H 0.093 0.907 49 H 0.137 0.863 50 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.714 -28.078 4.379 34.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.222 4.222 3 Si 0.840 3.160 4 H -0.176 1.176 5 H -0.190 1.190 6 H -0.194 1.194 7 C -0.490 4.490 8 H 0.117 0.883 9 O -0.141 6.141 10 C 0.061 3.939 11 C -0.226 4.226 12 C -0.076 4.076 13 C -0.145 4.145 14 C -0.117 4.117 15 C 0.298 3.702 16 O -0.460 6.460 17 N -0.366 5.366 18 C 0.040 3.960 19 C -0.160 4.160 20 C -0.069 4.069 21 N -0.231 5.231 22 C -0.092 4.092 23 C -0.268 4.268 24 C -0.206 4.206 25 C -0.070 4.070 26 C -0.150 4.150 27 C -0.079 4.079 28 C -0.264 4.264 29 H 0.082 0.918 30 H 0.130 0.870 31 H 0.165 0.835 32 H 0.150 0.850 33 H 0.146 0.854 34 H 0.256 0.744 35 H 0.071 0.929 36 H 0.101 0.899 37 H 0.065 0.935 38 H 0.045 0.955 39 H 0.096 0.904 40 H 0.153 0.847 41 H 0.104 0.896 42 H 0.121 0.879 43 H 0.130 0.870 44 H 0.107 0.893 45 H 0.047 0.953 46 H 0.119 0.881 47 H 0.107 0.893 48 H 0.111 0.889 49 H 0.155 0.845 50 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 19.365 -27.578 4.717 34.027 hybrid contribution -0.739 1.399 0.683 1.723 sum 18.626 -26.179 5.401 32.580 Atomic orbital electron populations 1.70194 1.08020 1.28717 1.49057 1.26628 0.96917 1.02775 0.95906 0.84507 0.78160 0.74715 0.78652 1.17563 1.19022 1.19359 1.21860 0.92478 0.81505 1.53121 0.88282 1.83935 1.35969 1.12615 1.81614 1.19942 0.91640 0.87985 0.94315 1.20449 0.99887 0.90766 1.11538 1.20887 0.93553 0.96773 0.96389 1.19278 0.93360 0.94404 1.07489 1.20537 1.02635 0.94850 0.93681 1.21197 0.76801 0.80247 0.91914 1.90753 1.52425 1.60345 1.42523 1.45915 1.55063 1.26127 1.09529 1.20923 0.96583 0.94344 0.84176 1.21899 0.98560 0.98708 0.96807 1.22058 0.99978 0.88596 0.96265 1.61874 1.33903 1.02324 1.24966 1.22816 1.02406 0.98146 0.85848 1.23573 1.01709 1.02298 0.99184 1.23111 0.90914 1.03701 1.02854 1.22120 0.90292 0.99679 0.94908 1.21815 1.03481 0.91932 0.97774 1.20934 0.99666 0.91256 0.96066 1.21225 0.93142 1.00043 1.11969 0.91834 0.87026 0.83521 0.85022 0.85401 0.74389 0.92872 0.89892 0.93488 0.95533 0.90377 0.84666 0.89576 0.87948 0.86987 0.89250 0.95310 0.88057 0.89290 0.88884 0.84490 0.86591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -58.37 13.67 21.62 0.30 -58.08 16 2 C -0.03 -1.49 5.49 84.84 0.47 -1.02 16 3 Si 1.02 44.46 29.55 68.60 2.03 46.49 16 4 H -0.25 -10.19 7.11 99.48 0.71 -9.49 16 5 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 6 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 7 C -0.41 -25.23 9.49 67.92 0.64 -24.58 16 8 H 0.10 5.60 5.20 -2.91 -0.02 5.58 16 9 O -0.23 -14.89 9.76 -22.72 -0.22 -15.11 16 10 C 0.11 5.94 6.65 22.58 0.15 6.09 16 11 C -0.21 -9.50 9.99 22.39 0.22 -9.28 16 12 C -0.06 -2.08 9.69 22.25 0.22 -1.87 16 13 C -0.14 -4.67 4.38 -19.84 -0.09 -4.75 16 14 C -0.08 -1.53 5.83 29.10 0.17 -1.36 16 15 C 0.51 12.22 7.79 87.66 0.68 12.90 16 16 O -0.58 -21.12 15.70 -3.05 -0.05 -21.17 16 17 N -0.71 -10.93 5.08 -442.16 -2.25 -13.18 16 18 C 0.14 2.44 2.52 45.07 0.11 2.55 16 19 C -0.12 -2.18 5.68 30.65 0.17 -2.01 16 20 C 0.06 1.00 4.12 86.33 0.36 1.35 16 21 N -0.51 -6.86 4.88 -871.10 -4.25 -11.11 16 22 C 0.02 0.20 6.11 44.91 0.27 0.47 16 23 C -0.23 -2.89 9.58 30.59 0.29 -2.60 16 24 C -0.17 -1.89 9.93 30.59 0.30 -1.59 16 25 C 0.06 0.64 5.44 86.33 0.47 1.11 16 26 C -0.11 -1.12 5.57 30.65 0.17 -0.95 16 27 C -0.06 -2.27 9.69 22.25 0.22 -2.05 16 28 C -0.24 -11.48 9.17 22.39 0.21 -11.28 16 29 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 30 H 0.11 5.05 8.06 -2.91 -0.02 5.03 16 31 H 0.15 4.08 8.06 -2.91 -0.02 4.06 16 32 H 0.13 1.69 8.08 -2.39 -0.02 1.67 16 33 H 0.13 1.74 8.08 -2.39 -0.02 1.72 16 34 H 0.42 3.11 8.60 -92.70 -0.80 2.31 16 35 H 0.05 1.26 7.58 -2.39 -0.02 1.25 16 36 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.03 0.52 7.12 -2.39 -0.02 0.50 16 39 H 0.08 1.29 6.43 -2.39 -0.02 1.28 16 40 H 0.14 1.15 8.04 -2.39 -0.02 1.13 16 41 H 0.09 1.33 5.97 -2.39 -0.01 1.32 16 42 H 0.10 1.10 8.14 -2.38 -0.02 1.08 16 43 H 0.11 0.92 8.14 -2.38 -0.02 0.90 16 44 H 0.09 1.14 7.23 -2.39 -0.02 1.12 16 45 H 0.03 0.38 8.14 -2.39 -0.02 0.36 16 46 H 0.10 0.74 8.07 -2.38 -0.02 0.72 16 47 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 48 H 0.09 0.71 8.14 -2.38 -0.02 0.69 16 49 H 0.14 4.10 8.06 -2.91 -0.02 4.08 16 50 H 0.12 5.53 5.64 -2.91 -0.02 5.52 16 Total: -1.00 -83.68 402.60 0.75 -82.92 By element: Atomic # 1 Polarization: 27.95 SS G_CDS: 0.16 Total: 28.11 kcal Atomic # 6 Polarization: -43.90 SS G_CDS: 5.04 Total: -38.86 kcal Atomic # 7 Polarization: -76.17 SS G_CDS: -6.20 Total: -82.37 kcal Atomic # 8 Polarization: -36.02 SS G_CDS: -0.27 Total: -36.28 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Total: -83.68 0.75 -82.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110614110.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.913 kcal (2) G-P(sol) polarization free energy of solvation -83.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds