Wall clock time and date at job start Wed Apr 1 2020 03:52:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31557 * 1 3 3 Si 1.86798 * 120.00177 * 2 1 4 4 H 1.48496 * 109.46895 * 269.99727 * 3 2 1 5 5 H 1.48502 * 109.47283 * 29.99990 * 3 2 1 6 6 H 1.48505 * 109.47104 * 149.99863 * 3 2 1 7 7 C 1.38655 * 119.99712 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99868 * 0.02562 * 7 2 1 9 9 O 1.34831 * 119.99777 * 179.97438 * 7 2 1 10 10 C 1.35751 * 116.99722 * 185.05865 * 9 7 2 11 11 C 1.38880 * 120.06982 * 354.47315 * 10 9 7 12 12 C 1.38105 * 119.92739 * 180.02562 * 11 10 9 13 13 C 1.38300 * 120.07215 * 0.02661 * 12 11 10 14 14 C 1.50698 * 119.92931 * 179.97438 * 13 12 11 15 15 C 1.50708 * 109.46971 * 89.99968 * 14 13 12 16 16 O 1.21277 * 119.99560 * 359.97438 * 15 14 13 17 17 N 1.34772 * 119.99930 * 179.97438 * 15 14 13 18 18 C 1.46494 * 119.99945 * 179.97438 * 17 15 14 19 19 C 1.53005 * 109.46992 * 180.02562 * 18 17 15 20 20 H 1.08996 * 110.90260 * 57.41526 * 19 18 17 21 21 C 1.55138 * 110.98930 * 293.54686 * 19 18 17 22 22 C 1.54317 * 103.01851 * 206.25454 * 21 19 18 23 23 N 1.47450 * 107.23500 * 22.28755 * 22 21 19 24 24 C 1.46897 * 111.00073 * 123.25505 * 23 22 21 25 25 C 1.53001 * 117.49919 * 59.87528 * 24 23 22 26 26 C 1.53003 * 60.03271 * 107.49993 * 25 24 23 27 27 C 1.47847 * 108.56273 * 0.98901 * 23 22 21 28 28 C 1.38306 * 120.13719 * 0.24395 * 13 12 11 29 29 C 1.38097 * 120.06805 * 359.45871 * 28 13 12 30 30 H 0.97009 * 119.99756 * 0.02562 * 1 2 3 31 31 H 1.07996 * 120.03774 * 0.03777 * 11 10 9 32 32 H 1.07998 * 119.95800 * 179.97438 * 12 11 10 33 33 H 1.08994 * 109.47112 * 329.99909 * 14 13 12 34 34 H 1.08998 * 109.46607 * 209.99285 * 14 13 12 35 35 H 0.97000 * 119.99867 * 0.02562 * 17 15 14 36 36 H 1.09001 * 109.47067 * 60.00276 * 18 17 15 37 37 H 1.09003 * 109.47462 * 300.00193 * 18 17 15 38 38 H 1.09000 * 110.70904 * 87.87650 * 21 19 18 39 39 H 1.09000 * 110.70965 * 324.63333 * 21 19 18 40 40 H 1.08997 * 109.89313 * 262.88094 * 22 21 19 41 41 H 1.09011 * 110.02368 * 141.76388 * 22 21 19 42 42 H 1.09000 * 115.56414 * 274.18552 * 24 23 22 43 43 H 1.08993 * 117.50174 * 0.02562 * 25 24 23 44 44 H 1.08994 * 117.49784 * 214.99768 * 25 24 23 45 45 H 1.08999 * 117.50207 * 107.47205 * 26 25 24 46 46 H 1.09001 * 117.49864 * 252.47516 * 26 25 24 47 47 H 1.08994 * 110.37675 * 94.73830 * 27 23 22 48 48 H 1.09004 * 110.37179 * 217.08011 * 27 23 22 49 49 H 1.07998 * 119.96332 * 179.70787 * 28 13 12 50 50 H 1.07996 * 120.03725 * 180.27113 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4972 2.0463 -1.4001 5 1 1.4471 2.6527 0.7000 6 1 3.5472 1.4401 0.7001 7 6 2.0088 -1.2008 0.0005 8 1 1.4687 -2.1361 0.0005 9 8 3.3571 -1.2008 0.0000 10 6 3.9733 -2.4058 -0.1061 11 6 3.2232 -3.5745 -0.0922 12 6 3.8532 -4.7988 -0.1998 13 6 5.2294 -4.8618 -0.3207 14 6 5.9136 -6.1995 -0.4373 15 6 6.0202 -6.5842 -1.8905 16 8 5.5832 -5.8450 -2.7470 17 7 6.6011 -7.7495 -2.2383 18 6 6.7043 -8.1237 -3.6508 19 6 7.3990 -9.4818 -3.7692 20 1 6.8617 -10.2439 -3.2048 21 6 8.8785 -9.3909 -3.3116 22 6 9.5557 -10.5348 -4.0954 23 7 8.7077 -10.8238 -5.2665 24 6 9.4720 -10.6956 -6.5144 25 6 10.6917 -11.6021 -6.6920 26 6 9.4191 -11.8662 -7.4994 27 6 7.5555 -9.8974 -5.2533 28 6 5.9796 -3.6999 -0.3291 29 6 5.3552 -2.4723 -0.2281 30 1 -0.4850 0.8401 -0.0004 31 1 2.1485 -3.5261 0.0023 32 1 3.2704 -5.7080 -0.1887 33 1 5.3331 -6.9521 0.0961 34 1 6.9117 -6.1359 -0.0041 35 1 6.9503 -8.3407 -1.5531 36 1 7.2841 -7.3708 -4.1847 37 1 5.7059 -8.1877 -4.0837 38 1 8.9608 -9.5582 -2.2376 39 1 9.3087 -8.4279 -3.5867 40 1 9.6327 -11.4210 -3.4656 41 1 10.5483 -10.2258 -4.4235 42 1 9.5276 -9.6898 -6.9307 43 1 10.9268 -12.2938 -5.8832 44 1 11.5498 -11.1925 -7.2249 45 1 9.4398 -11.6299 -8.5632 46 1 8.8174 -12.7316 -7.2216 47 1 7.7633 -9.0245 -5.8720 48 1 6.6563 -10.4053 -5.6019 49 1 7.0546 -3.7526 -0.4189 50 1 5.9411 -1.5652 -0.2392 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000110654893.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:52:00 Heat of formation + Delta-G solvation = -31.683320 kcal Electronic energy + Delta-G solvation = -28379.789726 eV Core-core repulsion = 24372.306443 eV Total energy + Delta-G solvation = -4007.483282 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.18372 -40.66904 -40.09495 -38.35029 -37.37970 -35.40185 -34.52216 -33.10251 -31.81449 -31.52210 -30.31386 -28.54238 -27.02869 -25.66230 -23.70876 -23.61489 -22.99842 -22.45989 -21.76040 -21.00509 -20.81365 -19.81776 -19.11379 -17.99028 -17.50342 -17.41108 -16.78943 -16.67806 -16.18081 -15.95765 -15.83854 -15.68472 -15.52629 -15.12535 -14.80594 -14.71894 -14.43217 -14.33497 -14.22856 -14.07436 -14.00147 -13.57834 -13.07396 -13.04547 -12.83923 -12.72579 -12.51761 -12.41221 -12.37432 -12.32149 -12.14187 -11.92910 -11.88795 -11.71847 -11.31245 -11.28163 -10.99734 -10.94544 -10.79725 -10.04979 -9.78538 -9.32446 -8.97747 -8.50845 -6.23374 0.58827 0.62261 1.29510 1.34380 1.50699 1.75764 2.23879 2.27402 2.77762 2.79138 2.91169 3.06052 3.18773 3.63691 3.65650 3.78498 3.86361 4.00403 4.04436 4.10909 4.15571 4.23405 4.26045 4.33136 4.36175 4.44211 4.49197 4.58241 4.61397 4.69832 4.71375 4.77562 4.79002 4.83138 4.86746 4.96426 4.98710 5.02680 5.06491 5.17408 5.25886 5.29292 5.32556 5.37829 5.50787 5.56901 5.74337 5.79869 5.91304 5.94326 6.13971 6.25325 6.65923 6.83412 7.39091 7.58211 8.60978 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.027193 B = 0.001534 C = 0.001518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.436351 B =18247.549234 C =18444.053441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.009 3.991 3 Si 0.972 3.028 4 H -0.268 1.268 5 H -0.264 1.264 6 H -0.262 1.262 7 C -0.401 4.401 8 H 0.079 0.921 9 O -0.246 6.246 10 C 0.117 3.883 11 C -0.239 4.239 12 C -0.065 4.065 13 C -0.138 4.138 14 C -0.079 4.079 15 C 0.509 3.491 16 O -0.584 6.584 17 N -0.715 5.715 18 C 0.134 3.866 19 C -0.096 4.096 20 H 0.103 0.897 21 C -0.132 4.132 22 C 0.042 3.958 23 N -0.511 5.511 24 C -0.016 4.016 25 C -0.165 4.165 26 C -0.164 4.164 27 C 0.052 3.948 28 C -0.060 4.060 29 C -0.194 4.194 30 H 0.285 0.715 31 H 0.106 0.894 32 H 0.133 0.867 33 H 0.127 0.873 34 H 0.136 0.864 35 H 0.418 0.582 36 H 0.051 0.949 37 H 0.053 0.947 38 H 0.097 0.903 39 H 0.063 0.937 40 H 0.083 0.917 41 H 0.059 0.941 42 H 0.086 0.914 43 H 0.098 0.902 44 H 0.105 0.895 45 H 0.102 0.898 46 H 0.094 0.906 47 H 0.045 0.955 48 H 0.082 0.918 49 H 0.154 0.846 50 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.669 -26.921 -7.279 37.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.189 4.189 3 Si 0.794 3.206 4 H -0.193 1.193 5 H -0.188 1.188 6 H -0.187 1.187 7 C -0.477 4.477 8 H 0.096 0.904 9 O -0.154 6.154 10 C 0.068 3.932 11 C -0.259 4.259 12 C -0.083 4.083 13 C -0.139 4.139 14 C -0.118 4.118 15 C 0.297 3.703 16 O -0.463 6.463 17 N -0.369 5.369 18 C 0.009 3.991 19 C -0.115 4.115 20 H 0.121 0.879 21 C -0.170 4.170 22 C -0.085 4.085 23 N -0.234 5.234 24 C -0.125 4.125 25 C -0.203 4.203 26 C -0.202 4.202 27 C -0.076 4.076 28 C -0.078 4.078 29 C -0.213 4.213 30 H 0.094 0.906 31 H 0.124 0.876 32 H 0.151 0.849 33 H 0.145 0.855 34 H 0.154 0.846 35 H 0.256 0.744 36 H 0.070 0.930 37 H 0.072 0.928 38 H 0.116 0.884 39 H 0.082 0.918 40 H 0.101 0.899 41 H 0.077 0.923 42 H 0.104 0.896 43 H 0.116 0.884 44 H 0.123 0.877 45 H 0.120 0.880 46 H 0.113 0.887 47 H 0.064 0.936 48 H 0.101 0.899 49 H 0.171 0.829 50 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 24.097 -26.593 -7.849 36.735 hybrid contribution -0.367 1.457 -0.098 1.506 sum 23.730 -25.136 -7.948 35.470 Atomic orbital electron populations 1.69736 1.06885 1.29582 1.50239 1.25295 0.95919 1.02167 0.95498 0.85201 0.78839 0.77346 0.79196 1.19325 1.18849 1.18653 1.20712 0.78179 0.96107 1.52709 0.90393 1.83507 1.21193 1.27460 1.83265 1.19690 0.93297 0.85076 0.95141 1.21258 1.00056 0.93394 1.11150 1.20921 0.94821 0.96101 0.96486 1.19340 0.92818 0.95299 1.06430 1.20560 1.04609 0.94496 0.92148 1.21190 0.76416 0.80700 0.92007 1.90763 1.48989 1.52830 1.53687 1.45798 1.61002 1.21278 1.08826 1.21141 1.00049 0.95398 0.82474 1.22434 0.96643 0.95645 0.96782 0.87881 1.22859 0.93688 0.98544 1.01951 1.22857 0.95865 0.98289 0.91457 1.63392 1.07909 1.50830 1.01310 1.22747 1.00821 0.94987 0.93987 1.23074 0.91771 1.02265 1.03153 1.23096 1.00628 0.99493 0.96982 1.22983 0.94513 0.94348 0.95728 1.20955 1.00397 0.90234 0.96169 1.20514 0.90561 0.99868 1.10386 0.90564 0.87649 0.84927 0.85469 0.84615 0.74434 0.93035 0.92820 0.88419 0.91819 0.89869 0.92267 0.89635 0.88351 0.87686 0.87988 0.88710 0.93629 0.89936 0.82854 0.85431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.79 13.96 21.61 0.30 -56.49 16 2 C 0.01 0.56 5.49 84.83 0.47 1.03 16 3 Si 0.97 47.03 28.62 68.60 1.96 48.99 16 4 H -0.27 -12.57 7.11 99.48 0.71 -11.87 16 5 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 6 H -0.26 -12.63 7.11 99.48 0.71 -11.92 16 7 C -0.40 -24.70 9.95 67.92 0.68 -24.03 16 8 H 0.08 5.05 5.44 -2.91 -0.02 5.03 16 9 O -0.25 -14.10 8.59 -22.76 -0.20 -14.29 16 10 C 0.12 5.81 6.65 22.58 0.15 5.96 16 11 C -0.24 -11.25 9.17 22.39 0.21 -11.05 16 12 C -0.07 -2.39 9.69 22.25 0.22 -2.18 16 13 C -0.14 -4.21 4.38 -19.83 -0.09 -4.29 16 14 C -0.08 -1.43 5.83 29.10 0.17 -1.26 16 15 C 0.51 11.56 7.82 87.66 0.69 12.24 16 16 O -0.58 -20.66 16.03 -3.02 -0.05 -20.71 16 17 N -0.72 -9.97 5.41 -463.06 -2.50 -12.47 16 18 C 0.13 2.03 5.12 86.38 0.44 2.48 16 19 C -0.10 -0.93 3.10 -9.41 -0.03 -0.96 16 20 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 21 C -0.13 -1.02 6.12 31.77 0.19 -0.83 16 22 C 0.04 0.39 6.57 86.64 0.57 0.96 16 23 N -0.51 -6.27 5.33 -860.18 -4.58 -10.85 16 24 C -0.02 -0.19 5.00 44.94 0.22 0.03 16 25 C -0.17 -1.52 9.64 30.60 0.29 -1.23 16 26 C -0.16 -1.71 10.46 30.62 0.32 -1.39 16 27 C 0.05 0.64 6.20 86.77 0.54 1.18 16 28 C -0.06 -1.92 9.69 22.25 0.22 -1.70 16 29 C -0.19 -7.90 9.99 22.39 0.22 -7.68 16 30 H 0.28 16.01 8.31 -92.70 -0.77 15.24 16 31 H 0.11 5.43 5.64 -2.91 -0.02 5.41 16 32 H 0.13 4.08 8.06 -2.91 -0.02 4.06 16 33 H 0.13 1.59 8.08 -2.39 -0.02 1.57 16 34 H 0.14 1.44 8.08 -2.39 -0.02 1.42 16 35 H 0.42 2.59 8.34 -92.71 -0.77 1.82 16 36 H 0.05 0.96 8.11 -2.39 -0.02 0.94 16 37 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.10 0.39 8.14 -2.39 -0.02 0.37 16 39 H 0.06 0.63 8.01 -2.39 -0.02 0.61 16 40 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 41 H 0.06 0.56 7.23 -2.38 -0.02 0.54 16 42 H 0.09 1.07 7.75 -2.39 -0.02 1.05 16 43 H 0.10 0.91 8.12 -2.39 -0.02 0.89 16 44 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 45 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 46 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 47 H 0.05 0.62 7.46 -2.39 -0.02 0.60 16 48 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 49 H 0.15 3.62 8.06 -2.91 -0.02 3.60 16 50 H 0.13 4.79 8.06 -2.91 -0.02 4.76 16 Total: -1.00 -79.90 410.00 0.58 -79.32 By element: Atomic # 1 Polarization: 19.04 SS G_CDS: 0.17 Total: 19.21 kcal Atomic # 6 Polarization: -38.18 SS G_CDS: 5.47 Total: -32.71 kcal Atomic # 7 Polarization: -73.03 SS G_CDS: -6.78 Total: -79.82 kcal Atomic # 8 Polarization: -34.76 SS G_CDS: -0.24 Total: -35.00 kcal Atomic # 14 Polarization: 47.03 SS G_CDS: 1.96 Total: 48.99 kcal Total: -79.90 0.58 -79.32 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110654893.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.641 kcal (2) G-P(sol) polarization free energy of solvation -79.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds