Wall clock time and date at job start Wed Apr 1 2020 03:52:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31554 * 1 3 3 Si 1.86793 * 120.00491 * 2 1 4 4 H 1.48498 * 109.47361 * 269.99505 * 3 2 1 5 5 H 1.48499 * 109.47296 * 30.00131 * 3 2 1 6 6 H 1.48500 * 109.47101 * 149.99760 * 3 2 1 7 7 C 1.38660 * 119.99247 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99591 * 179.97438 * 7 2 1 9 9 O 1.34827 * 120.00549 * 0.02562 * 7 2 1 10 10 C 1.35745 * 117.00402 * 185.05594 * 9 7 2 11 11 C 1.38883 * 120.06827 * 354.45645 * 10 9 7 12 12 C 1.38095 * 119.93167 * 179.97438 * 11 10 9 13 13 C 1.38301 * 120.06745 * 359.97438 * 12 11 10 14 14 C 1.50709 * 119.92981 * 179.97438 * 13 12 11 15 15 C 1.50698 * 109.46672 * 89.99903 * 14 13 12 16 16 O 1.21281 * 120.00745 * 359.97438 * 15 14 13 17 17 N 1.34782 * 119.99544 * 179.97438 * 15 14 13 18 18 C 1.46502 * 119.99864 * 179.97438 * 17 15 14 19 19 C 1.52998 * 109.46774 * 180.02562 * 18 17 15 20 20 H 1.08999 * 110.76532 * 308.19495 * 19 18 17 21 21 C 1.55396 * 110.84850 * 71.46637 * 19 18 17 22 22 C 1.54909 * 101.74190 * 153.86006 * 21 19 18 23 23 N 1.47849 * 104.79684 * 323.01839 * 22 21 19 24 24 C 1.46899 * 110.99887 * 146.36538 * 23 22 21 25 25 C 1.53001 * 117.49932 * 127.90933 * 24 23 22 26 26 C 1.52996 * 117.50357 * 59.24793 * 24 23 22 27 27 C 1.47449 * 108.56548 * 24.09560 * 23 22 21 28 28 C 1.38300 * 120.14122 * 0.27321 * 13 12 11 29 29 C 1.38101 * 120.06707 * 359.48964 * 28 13 12 30 30 H 0.97010 * 119.99591 * 0.02562 * 1 2 3 31 31 H 1.07998 * 120.03237 * 359.96134 * 11 10 9 32 32 H 1.07991 * 119.96642 * 180.02562 * 12 11 10 33 33 H 1.09002 * 109.46809 * 329.99949 * 14 13 12 34 34 H 1.08998 * 109.46893 * 209.99725 * 14 13 12 35 35 H 0.97001 * 120.00346 * 0.02562 * 17 15 14 36 36 H 1.08994 * 109.47173 * 60.00157 * 18 17 15 37 37 H 1.08998 * 109.47297 * 299.99833 * 18 17 15 38 38 H 1.09000 * 110.86903 * 35.77492 * 21 19 18 39 39 H 1.08997 * 111.02613 * 272.01335 * 21 19 18 40 40 H 1.09001 * 110.37265 * 204.19372 * 22 21 19 41 41 H 1.09001 * 110.37660 * 81.84851 * 22 21 19 42 42 H 1.09003 * 115.54941 * 273.57141 * 24 23 22 43 43 H 1.09001 * 117.49839 * 359.97438 * 25 24 23 44 44 H 1.08996 * 117.49875 * 145.02039 * 25 24 23 45 45 H 1.08998 * 117.49736 * 214.98469 * 26 24 23 46 46 H 1.09006 * 117.49458 * 359.97260 * 26 24 23 47 47 H 1.08999 * 109.88423 * 118.41840 * 27 23 22 48 48 H 1.08998 * 109.88778 * 239.43665 * 27 23 22 49 49 H 1.08000 * 119.96592 * 179.72869 * 28 13 12 50 50 H 1.07996 * 120.03726 * 180.25171 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6176 0.0000 4 1 2.4973 2.0462 -1.4000 5 1 1.4472 2.6526 0.7001 6 1 3.5472 1.4399 0.7001 7 6 2.0087 -1.2009 0.0005 8 1 3.0887 -1.2010 0.0001 9 8 1.3345 -2.3685 0.0005 10 6 2.0696 -3.5047 0.1077 11 6 3.4568 -3.4397 0.0950 12 6 4.2019 -4.5973 0.2047 13 6 3.5680 -5.8203 0.3276 14 6 4.3841 -7.0816 0.4465 15 6 4.6636 -7.3638 1.9003 16 8 4.2421 -6.6143 2.7555 17 7 5.3821 -8.4492 2.2500 18 6 5.6543 -8.7233 3.6631 19 6 6.4827 -10.0039 3.7838 20 1 6.0150 -10.8200 3.2332 21 6 7.9371 -9.7704 3.2888 22 6 8.7179 -10.8443 4.0868 23 7 8.0623 -10.8814 5.4115 24 6 8.0800 -12.2401 5.9697 25 6 8.6280 -12.4142 7.3876 26 6 9.4445 -12.8972 6.1863 27 6 6.6805 -10.3881 5.2653 28 6 2.1867 -5.8888 0.3354 29 6 1.4360 -4.7344 0.2310 30 1 -0.4850 0.8402 -0.0004 31 1 3.9524 -2.4849 -0.0007 32 1 5.2806 -4.5473 0.1954 33 1 5.3263 -6.9564 -0.0870 34 1 3.8299 -7.9150 0.0147 35 1 5.7195 -9.0485 1.5660 36 1 4.7123 -8.8478 4.1971 37 1 6.2091 -7.8901 4.0945 38 1 8.2786 -8.7678 3.5461 39 1 8.0180 -9.9456 2.2161 40 1 9.7639 -10.5552 4.1892 41 1 8.6377 -11.8145 3.5964 42 1 7.2539 -12.8835 5.6670 43 1 8.9758 -11.5206 7.9060 44 1 8.1628 -13.1724 8.0174 45 1 9.5161 -13.9730 6.0263 46 1 10.3292 -12.3215 5.9141 47 1 5.9757 -11.1721 5.5424 48 1 6.5300 -9.5138 5.8985 49 1 1.6946 -6.8458 0.4271 50 1 0.3574 -4.7881 0.2412 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000110654897.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:52:05 Heat of formation + Delta-G solvation = -10.428826 kcal Electronic energy + Delta-G solvation = -28331.791566 eV Core-core repulsion = 24325.229948 eV Total energy + Delta-G solvation = -4006.561618 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -40.16073 -39.50272 -38.70730 -36.92796 -36.38118 -34.53237 -32.44375 -31.62896 -30.65149 -30.09232 -29.81577 -26.94325 -25.41084 -24.59671 -23.09873 -22.54543 -21.91631 -21.11442 -20.89626 -20.68308 -19.86984 -17.92608 -17.21449 -16.95672 -16.79507 -16.67019 -15.65199 -15.49919 -14.76695 -14.67372 -14.52046 -14.25716 -14.16054 -13.97773 -13.70212 -13.60848 -13.42845 -13.31433 -12.98790 -12.65293 -12.56267 -12.34012 -12.27647 -11.94973 -11.81292 -11.67533 -11.47176 -11.29791 -11.21811 -11.14640 -10.85452 -10.79438 -10.71511 -10.57672 -10.56048 -10.38698 -9.68124 -9.27078 -9.11852 -8.79461 -8.76841 -8.09248 -7.10644 -6.39744 -3.98188 2.30451 2.31940 2.81848 3.13211 3.17026 3.20079 3.22728 3.25113 3.41479 4.01508 4.11373 4.14301 4.34783 4.46117 4.54417 4.60193 4.72523 4.88550 4.89209 4.95549 5.01748 5.05991 5.13801 5.19342 5.23343 5.30189 5.35378 5.37331 5.39217 5.40699 5.49550 5.56177 5.63186 5.65958 5.71047 5.73222 5.78639 5.85404 5.90511 6.27334 6.36029 6.44159 6.47612 6.65150 6.76102 6.97324 7.11070 7.29529 7.42753 7.47468 7.51413 7.89917 8.05666 8.36450 9.06079 9.77007 10.78460 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.024343 B = 0.001531 C = 0.001498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.956349 B =18279.106036 C =18684.923552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.039 3.961 3 Si 0.941 3.059 4 H -0.274 1.274 5 H -0.278 1.278 6 H -0.268 1.268 7 C -0.391 4.391 8 H 0.092 0.908 9 O -0.179 6.179 10 C 0.156 3.844 11 C -0.232 4.232 12 C -0.056 4.056 13 C -0.170 4.170 14 C -0.079 4.079 15 C 0.508 3.492 16 O -0.519 6.519 17 N -0.741 5.741 18 C 0.132 3.868 19 C -0.121 4.121 20 H 0.082 0.918 21 C -0.126 4.126 22 C 0.045 3.955 23 N -0.502 5.502 24 C -0.003 4.003 25 C -0.163 4.163 26 C -0.175 4.175 27 C 0.054 3.946 28 C -0.060 4.060 29 C -0.191 4.191 30 H 0.269 0.731 31 H 0.126 0.874 32 H 0.103 0.897 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.397 0.603 36 H 0.067 0.933 37 H 0.070 0.930 38 H 0.080 0.920 39 H 0.076 0.924 40 H 0.080 0.920 41 H 0.049 0.951 42 H 0.090 0.910 43 H 0.101 0.899 44 H 0.094 0.906 45 H 0.094 0.906 46 H 0.098 0.902 47 H 0.060 0.940 48 H 0.085 0.915 49 H 0.108 0.892 50 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.027 -26.507 6.969 32.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.165 4.165 3 Si 0.765 3.235 4 H -0.199 1.199 5 H -0.203 1.203 6 H -0.192 1.192 7 C -0.467 4.467 8 H 0.109 0.891 9 O -0.082 6.082 10 C 0.103 3.897 11 C -0.252 4.252 12 C -0.075 4.075 13 C -0.171 4.171 14 C -0.119 4.119 15 C 0.294 3.706 16 O -0.393 6.393 17 N -0.395 5.395 18 C 0.008 3.992 19 C -0.141 4.141 20 H 0.100 0.900 21 C -0.164 4.164 22 C -0.082 4.082 23 N -0.226 5.226 24 C -0.112 4.112 25 C -0.201 4.201 26 C -0.212 4.212 27 C -0.075 4.075 28 C -0.078 4.078 29 C -0.211 4.211 30 H 0.079 0.921 31 H 0.144 0.856 32 H 0.121 0.879 33 H 0.109 0.891 34 H 0.109 0.891 35 H 0.230 0.770 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.099 0.901 39 H 0.094 0.906 40 H 0.098 0.902 41 H 0.067 0.933 42 H 0.107 0.893 43 H 0.119 0.881 44 H 0.112 0.888 45 H 0.112 0.888 46 H 0.116 0.884 47 H 0.078 0.922 48 H 0.103 0.897 49 H 0.126 0.874 50 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 17.539 -25.395 7.947 31.869 hybrid contribution 0.257 -0.085 -0.787 0.832 sum 17.796 -25.479 7.161 31.893 Atomic orbital electron populations 1.70046 1.05943 1.27564 1.46316 1.25279 0.95836 0.98789 0.96623 0.85716 0.78958 0.80143 0.78639 1.19919 1.20275 1.19210 1.21329 0.91800 0.80864 1.52717 0.89098 1.83972 1.34364 1.11455 1.78448 1.19380 0.90297 0.88026 0.92026 1.21105 0.93812 0.98761 1.11479 1.20500 0.98018 0.91782 0.97180 1.18639 0.93216 0.92816 1.12477 1.20404 1.01155 0.98061 0.92304 1.21064 0.77339 0.79994 0.92169 1.90756 1.49687 1.46699 1.52147 1.46070 1.57117 1.28218 1.08078 1.21225 0.99233 0.95879 0.82890 1.22690 0.96261 0.97862 0.97292 0.89982 1.22871 0.93703 1.00046 0.99744 1.22999 0.99162 0.98073 0.87953 1.63382 1.15697 1.19798 1.23716 1.22669 0.97456 0.90709 1.00365 1.23070 1.03207 1.03094 0.90681 1.23042 0.94656 1.00297 1.03221 1.22791 0.88753 1.00839 0.95079 1.20396 0.92774 0.96692 0.97973 1.20152 0.99476 0.90304 1.11140 0.92093 0.85599 0.87852 0.89071 0.89063 0.76992 0.91493 0.91208 0.90103 0.90554 0.90194 0.93284 0.89263 0.88077 0.88784 0.88751 0.88371 0.92189 0.89702 0.87421 0.86562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.87 13.67 55.48 0.76 -25.11 16 2 C 0.04 1.09 5.49 -17.51 -0.10 0.99 16 3 Si 0.94 21.04 29.55 -169.99 -5.02 16.02 16 4 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 5 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 6 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 7 C -0.39 -11.26 9.49 30.89 0.29 -10.97 16 8 H 0.09 2.43 5.20 -52.49 -0.27 2.16 16 9 O -0.18 -5.29 9.76 0.07 0.00 -5.29 16 10 C 0.16 3.96 6.65 -39.11 -0.26 3.70 16 11 C -0.23 -5.31 9.17 -39.40 -0.36 -5.67 16 12 C -0.06 -1.09 9.69 -39.61 -0.38 -1.48 16 13 C -0.17 -3.02 4.38 -104.57 -0.46 -3.47 16 14 C -0.08 -0.99 5.83 -29.03 -0.17 -1.16 16 15 C 0.51 6.96 7.82 -10.98 -0.09 6.87 16 16 O -0.52 -9.91 16.03 5.56 0.09 -9.83 16 17 N -0.74 -6.88 5.48 -60.30 -0.33 -7.21 16 18 C 0.13 1.18 4.97 -4.04 -0.02 1.16 16 19 C -0.12 -0.76 2.97 -88.66 -0.26 -1.02 16 20 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 21 C -0.13 -0.73 6.46 -24.45 -0.16 -0.89 16 22 C 0.05 0.27 6.26 -2.29 -0.01 0.26 16 23 N -0.50 -3.62 5.33 -223.28 -1.19 -4.80 16 24 C 0.00 -0.02 4.91 -67.71 -0.33 -0.35 16 25 C -0.16 -0.95 10.46 -26.69 -0.28 -1.23 16 26 C -0.17 -0.94 9.93 -26.70 -0.27 -1.20 16 27 C 0.05 0.37 6.48 -2.83 -0.02 0.35 16 28 C -0.06 -1.13 9.69 -39.61 -0.38 -1.52 16 29 C -0.19 -4.27 9.99 -39.39 -0.39 -4.66 16 30 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 31 H 0.13 2.87 5.64 -52.49 -0.30 2.57 16 32 H 0.10 1.71 8.06 -52.49 -0.42 1.29 16 33 H 0.09 0.91 8.08 -51.93 -0.42 0.49 16 34 H 0.09 0.90 8.08 -51.93 -0.42 0.48 16 35 H 0.40 2.42 8.47 -40.82 -0.35 2.07 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.07 0.73 8.00 -51.93 -0.42 0.32 16 38 H 0.08 0.57 7.95 -51.93 -0.41 0.16 16 39 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.05 0.28 7.81 -51.93 -0.41 -0.13 16 42 H 0.09 0.53 7.79 -51.93 -0.40 0.13 16 43 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 44 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 45 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.10 0.55 8.11 -51.93 -0.42 0.13 16 47 H 0.06 0.39 7.37 -51.93 -0.38 0.00 16 48 H 0.08 0.65 7.82 -51.93 -0.41 0.25 16 49 H 0.11 1.70 8.06 -52.49 -0.42 1.27 16 50 H 0.12 2.49 8.06 -52.49 -0.42 2.07 16 LS Contribution 411.58 15.07 6.20 6.20 Total: -1.00 -34.93 411.58 -11.11 -46.03 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -7.96 Total: 4.26 kcal Atomic # 6 Polarization: -16.63 SS G_CDS: -3.65 Total: -20.28 kcal Atomic # 7 Polarization: -36.36 SS G_CDS: -0.76 Total: -37.13 kcal Atomic # 8 Polarization: -15.20 SS G_CDS: 0.09 Total: -15.11 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -34.93 -11.11 -46.03 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110654897.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.605 kcal (2) G-P(sol) polarization free energy of solvation -34.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds