Wall clock time and date at job start Wed Apr 1 2020 03:49:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31559 * 1 3 3 Si 1.86799 * 119.99872 * 2 1 4 4 H 1.48501 * 109.46927 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47291 * 300.00118 * 3 2 1 6 6 H 1.48495 * 109.47132 * 60.00340 * 3 2 1 7 7 C 1.38652 * 120.00021 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00120 * 180.02562 * 7 2 1 9 9 O 1.34830 * 120.00222 * 359.97438 * 7 2 1 10 10 C 1.35748 * 117.00158 * 185.06116 * 9 7 2 11 11 C 1.38874 * 120.06919 * 354.45958 * 10 9 7 12 12 C 1.38104 * 119.93261 * 180.25382 * 11 10 9 13 13 C 1.38306 * 120.06267 * 359.43483 * 12 11 10 14 14 C 1.50702 * 119.92948 * 180.27562 * 13 12 11 15 15 C 1.50700 * 109.47058 * 270.31736 * 14 13 12 16 16 O 1.21280 * 120.00147 * 359.97438 * 15 14 13 17 17 N 1.34776 * 119.99895 * 179.97438 * 15 14 13 18 18 C 1.47017 * 125.64920 * 359.68817 * 17 15 14 19 19 C 1.54317 * 107.27455 * 180.96849 * 18 17 15 20 20 C 1.55159 * 102.86436 * 22.53054 * 19 18 17 21 21 H 1.08997 * 111.00565 * 82.37620 * 20 19 18 22 22 N 1.46898 * 111.00451 * 206.22977 * 20 19 18 23 23 C 1.48530 * 111.00049 * 169.79984 * 22 20 19 24 24 C 1.54940 * 103.22756 * 159.72105 * 23 22 20 25 25 C 1.54603 * 102.91964 * 322.58492 * 24 23 22 26 26 C 1.47907 * 110.99941 * 287.19301 * 22 20 19 27 27 C 1.47426 * 125.64407 * 180.02562 * 17 15 14 28 28 C 1.38293 * 120.14048 * 0.59218 * 13 12 11 29 29 C 1.38102 * 120.07094 * 359.67990 * 28 13 12 30 30 H 0.96996 * 119.99996 * 359.97438 * 1 2 3 31 31 H 1.08000 * 120.03448 * 359.97438 * 11 10 9 32 32 H 1.07999 * 119.97135 * 179.70079 * 12 11 10 33 33 H 1.09002 * 109.47071 * 30.31852 * 14 13 12 34 34 H 1.09000 * 109.47249 * 150.31782 * 14 13 12 35 35 H 1.08994 * 109.88648 * 300.51544 * 18 17 15 36 36 H 1.09003 * 109.87949 * 61.68503 * 18 17 15 37 37 H 1.09005 * 110.92620 * 264.11057 * 19 18 17 38 38 H 1.09003 * 110.59014 * 140.79212 * 19 18 17 39 39 H 1.09000 * 110.66602 * 278.15140 * 23 22 20 40 40 H 1.09000 * 110.66935 * 41.28201 * 23 22 20 41 41 H 1.09002 * 110.72362 * 204.22742 * 24 23 22 42 42 H 1.08996 * 110.72602 * 80.94260 * 24 23 22 43 43 H 1.09005 * 110.30425 * 263.04019 * 25 24 23 44 44 H 1.08996 * 110.30566 * 140.87715 * 25 24 23 45 45 H 1.08998 * 109.91578 * 333.51491 * 26 22 20 46 46 H 1.09007 * 109.91541 * 94.60276 * 26 22 20 47 47 H 1.09002 * 110.36607 * 274.66599 * 27 17 15 48 48 H 1.08997 * 110.37284 * 36.88533 * 27 17 15 49 49 H 1.08006 * 119.96586 * 179.70420 * 28 13 12 50 50 H 1.07996 * 120.03470 * 179.97438 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.7096 1.3464 0.0006 5 1 1.8908 2.3964 -1.2124 6 1 1.8909 2.3964 1.2125 7 6 2.0089 -1.2008 -0.0005 8 1 3.0889 -1.2008 -0.0001 9 8 1.3348 -2.3684 -0.0005 10 6 2.0701 -3.5046 0.1056 11 6 3.4572 -3.4395 0.0921 12 6 4.2025 -4.5976 0.1950 13 6 3.5688 -5.8202 0.3232 14 6 4.3850 -7.0815 0.4415 15 6 4.6504 -7.6389 -0.9332 16 8 4.2187 -7.0685 -1.9126 17 7 5.3674 -8.7714 -1.0743 18 6 5.9527 -9.5571 0.0218 19 6 6.6999 -10.7473 -0.6158 20 6 6.9781 -10.2479 -2.0582 21 1 7.8659 -9.6164 -2.0886 22 7 7.1046 -11.3759 -2.9907 23 6 7.1259 -10.9028 -4.3985 24 6 7.7745 -12.0859 -5.1603 25 6 8.8473 -12.5897 -4.1676 26 6 8.3828 -12.0915 -2.7865 27 6 5.7005 -9.4235 -2.3538 28 6 2.1876 -5.8884 0.3364 29 6 1.4367 -4.7345 0.2283 30 1 -0.4850 0.8400 0.0004 31 1 3.9526 -2.4846 -0.0033 32 1 5.2812 -4.5481 0.1797 33 1 5.3324 -6.8565 0.9315 34 1 3.8362 -7.8155 1.0315 35 1 6.6497 -8.9403 0.5890 36 1 5.1630 -9.9256 0.6765 37 1 6.0722 -11.6383 -0.6304 38 1 7.6337 -10.9409 -0.0879 39 1 6.1132 -10.7222 -4.7590 40 1 7.7351 -10.0040 -4.4932 41 1 8.2365 -11.7419 -6.0857 42 1 7.0390 -12.8648 -5.3614 43 1 9.8205 -12.1657 -4.4151 44 1 8.8936 -13.6786 -4.1812 45 1 9.1255 -11.4128 -2.3674 46 1 8.2319 -12.9369 -2.1151 47 1 4.8893 -10.0808 -2.6671 48 1 5.8990 -8.6750 -3.1208 49 1 1.6956 -6.8452 0.4319 50 1 0.3581 -4.7884 0.2382 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000110690659.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:49:26 Heat of formation + Delta-G solvation = -49.584680 kcal Electronic energy + Delta-G solvation = -29089.066773 eV Core-core repulsion = 25080.807229 eV Total energy + Delta-G solvation = -4008.259544 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.37756 -40.71279 -39.86919 -38.36747 -37.68313 -34.41425 -33.70704 -32.68127 -31.79143 -31.02757 -29.93745 -29.12427 -27.87383 -26.86651 -24.43685 -23.64920 -22.85642 -22.43144 -21.61558 -21.16930 -20.09488 -19.83065 -18.84131 -18.17129 -17.83935 -17.00198 -16.58657 -16.54153 -16.25461 -16.03285 -15.71989 -15.49612 -15.33042 -15.01343 -14.89320 -14.67326 -14.43749 -14.25481 -13.95627 -13.87059 -13.70483 -13.59400 -13.33102 -13.10632 -12.97823 -12.79664 -12.48928 -12.35612 -12.28596 -12.22727 -12.17539 -12.09526 -12.04727 -11.82768 -11.75619 -11.42249 -11.18813 -10.96493 -10.76398 -9.77794 -9.66560 -9.46920 -8.91621 -8.48019 -6.16305 0.60200 0.64984 1.33418 1.42029 1.52385 1.66307 1.95013 2.17019 2.81145 2.97986 3.15082 3.31949 3.50591 3.66692 3.74076 3.81587 3.92791 4.01038 4.03942 4.10410 4.13910 4.18905 4.31039 4.34017 4.40425 4.45960 4.57170 4.59690 4.63716 4.68355 4.69921 4.78278 4.82079 4.85043 4.93768 4.96831 5.00461 5.07554 5.08316 5.13906 5.17258 5.23964 5.28838 5.30696 5.33464 5.55408 5.70373 5.76433 5.86652 6.02218 6.04846 6.21006 6.51560 6.96407 7.20834 7.77639 8.75660 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.023384 B = 0.001753 C = 0.001706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.134870 B =15965.861580 C =16408.102761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.025 4.025 3 Si 1.021 2.979 4 H -0.252 1.252 5 H -0.269 1.269 6 H -0.265 1.265 7 C -0.414 4.414 8 H 0.100 0.900 9 O -0.233 6.233 10 C 0.113 3.887 11 C -0.244 4.244 12 C -0.060 4.060 13 C -0.147 4.147 14 C -0.069 4.069 15 C 0.524 3.476 16 O -0.584 6.584 17 N -0.622 5.622 18 C 0.094 3.906 19 C -0.110 4.110 20 C 0.067 3.933 21 H 0.058 0.942 22 N -0.515 5.515 23 C 0.027 3.973 24 C -0.122 4.122 25 C -0.130 4.130 26 C 0.036 3.964 27 C 0.114 3.886 28 C -0.057 4.057 29 C -0.206 4.206 30 H 0.273 0.727 31 H 0.118 0.882 32 H 0.137 0.863 33 H 0.127 0.873 34 H 0.129 0.871 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.103 0.897 39 H 0.074 0.926 40 H 0.041 0.959 41 H 0.079 0.921 42 H 0.074 0.926 43 H 0.072 0.928 44 H 0.081 0.919 45 H 0.049 0.951 46 H 0.089 0.911 47 H 0.066 0.934 48 H 0.050 0.950 49 H 0.146 0.854 50 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.143 -28.888 -1.002 36.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.222 4.222 3 Si 0.840 3.160 4 H -0.175 1.175 5 H -0.194 1.194 6 H -0.190 1.190 7 C -0.490 4.490 8 H 0.118 0.882 9 O -0.140 6.140 10 C 0.063 3.937 11 C -0.263 4.263 12 C -0.078 4.078 13 C -0.148 4.148 14 C -0.108 4.108 15 C 0.314 3.686 16 O -0.463 6.463 17 N -0.357 5.357 18 C -0.028 4.028 19 C -0.148 4.148 20 C -0.043 4.043 21 H 0.076 0.924 22 N -0.239 5.239 23 C -0.101 4.101 24 C -0.160 4.160 25 C -0.168 4.168 26 C -0.091 4.091 27 C -0.009 4.009 28 C -0.075 4.075 29 C -0.225 4.225 30 H 0.082 0.918 31 H 0.136 0.864 32 H 0.155 0.845 33 H 0.145 0.855 34 H 0.147 0.853 35 H 0.109 0.891 36 H 0.110 0.890 37 H 0.108 0.892 38 H 0.122 0.878 39 H 0.092 0.908 40 H 0.059 0.941 41 H 0.097 0.903 42 H 0.093 0.907 43 H 0.091 0.909 44 H 0.100 0.900 45 H 0.067 0.933 46 H 0.108 0.892 47 H 0.084 0.916 48 H 0.069 0.931 49 H 0.164 0.836 50 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 21.025 -28.693 -1.407 35.600 hybrid contribution 0.344 1.817 -0.598 1.944 sum 21.369 -26.876 -2.005 34.395 Atomic orbital electron populations 1.70197 1.08028 1.28731 1.48987 1.26629 0.96913 1.02772 0.95860 0.84502 0.78159 0.74689 0.78648 1.17550 1.19378 1.19006 1.21871 0.92505 0.81486 1.53173 0.88239 1.83937 1.35956 1.12606 1.81532 1.19932 0.91624 0.87986 0.94180 1.21222 0.93140 1.00002 1.11949 1.20921 0.99671 0.91208 0.95986 1.19254 0.93393 0.94273 1.07875 1.20483 1.02523 0.94821 0.93010 1.20965 0.76651 0.78763 0.92228 1.90748 1.52445 1.60274 1.42813 1.48541 1.53322 1.24712 1.09141 1.22387 0.98439 0.92646 0.89354 1.22661 1.01954 0.97558 0.92658 1.22907 0.95523 0.91348 0.94477 0.92421 1.64802 1.34613 1.22017 1.02512 1.23284 1.00886 0.97222 0.88708 1.22478 0.98148 0.97209 0.98163 1.22418 0.98627 1.02077 0.93680 1.22925 0.89166 0.98710 0.98336 1.22079 0.97234 0.95055 0.86561 1.20868 0.93493 0.96814 0.96355 1.20441 0.99923 0.90704 1.11477 0.91823 0.86432 0.84484 0.85475 0.85263 0.89129 0.89044 0.89248 0.87816 0.90778 0.94095 0.90265 0.90750 0.90922 0.89981 0.93275 0.89245 0.91573 0.93129 0.83637 0.86901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -58.35 13.67 21.61 0.30 -58.06 16 2 C -0.02 -1.45 5.49 84.83 0.47 -0.98 16 3 Si 1.02 44.43 29.55 68.60 2.03 46.45 16 4 H -0.25 -10.17 7.11 99.48 0.71 -9.46 16 5 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 6 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 7 C -0.41 -25.28 9.49 67.92 0.64 -24.64 16 8 H 0.10 5.62 5.20 -2.91 -0.02 5.60 16 9 O -0.23 -14.85 9.76 -22.72 -0.22 -15.08 16 10 C 0.11 6.06 6.65 22.58 0.15 6.21 16 11 C -0.24 -11.52 9.17 22.39 0.21 -11.31 16 12 C -0.06 -2.25 9.69 22.25 0.22 -2.04 16 13 C -0.15 -4.92 4.38 -19.83 -0.09 -5.01 16 14 C -0.07 -1.51 5.02 29.10 0.15 -1.37 16 15 C 0.52 14.27 7.84 87.66 0.69 14.96 16 16 O -0.58 -22.96 16.29 -3.03 -0.05 -23.01 16 17 N -0.62 -12.29 3.33 -811.85 -2.70 -14.99 16 18 C 0.09 0.93 6.48 86.73 0.56 1.49 16 19 C -0.11 -0.90 6.27 31.78 0.20 -0.70 16 20 C 0.07 0.88 2.45 46.30 0.11 0.99 16 21 H 0.06 0.79 7.90 -2.39 -0.02 0.77 16 22 N -0.51 -6.58 5.15 -849.80 -4.38 -10.96 16 23 C 0.03 0.36 5.78 86.65 0.50 0.86 16 24 C -0.12 -1.20 7.06 31.80 0.22 -0.98 16 25 C -0.13 -1.00 6.93 31.47 0.22 -0.78 16 26 C 0.04 0.32 6.35 86.44 0.55 0.87 16 27 C 0.11 2.27 5.59 86.85 0.49 2.75 16 28 C -0.06 -2.11 9.69 22.25 0.22 -1.89 16 29 C -0.21 -9.55 9.99 22.39 0.22 -9.33 16 30 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 31 H 0.12 5.61 5.64 -2.91 -0.02 5.60 16 32 H 0.14 4.19 8.06 -2.91 -0.02 4.16 16 33 H 0.13 1.97 8.09 -2.39 -0.02 1.96 16 34 H 0.13 1.98 8.08 -2.39 -0.02 1.96 16 35 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 37 H 0.09 0.77 8.14 -2.38 -0.02 0.75 16 38 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 39 H 0.07 1.14 8.01 -2.39 -0.02 1.12 16 40 H 0.04 0.59 8.02 -2.39 -0.02 0.57 16 41 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 42 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 43 H 0.07 0.49 8.14 -2.38 -0.02 0.47 16 44 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 45 H 0.05 0.40 7.62 -2.39 -0.02 0.39 16 46 H 0.09 0.65 8.14 -2.38 -0.02 0.63 16 47 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 48 H 0.05 1.24 8.03 -2.39 -0.02 1.22 16 49 H 0.15 4.22 8.06 -2.91 -0.02 4.20 16 50 H 0.11 5.15 8.06 -2.91 -0.02 5.12 16 Total: -1.00 -84.02 403.89 1.61 -82.41 By element: Atomic # 1 Polarization: 23.20 SS G_CDS: 0.92 Total: 24.13 kcal Atomic # 6 Polarization: -36.62 SS G_CDS: 5.72 Total: -30.90 kcal Atomic # 7 Polarization: -77.22 SS G_CDS: -6.78 Total: -84.00 kcal Atomic # 8 Polarization: -37.81 SS G_CDS: -0.27 Total: -38.09 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.45 kcal Total: -84.02 1.61 -82.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110690659.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.823 kcal (2) G-P(sol) polarization free energy of solvation -84.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds