Wall clock time and date at job start Wed Apr 1 2020 03:51:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31419 * 1 3 3 Si 1.86802 * 119.99697 * 2 1 4 4 H 1.48494 * 109.46932 * 269.99603 * 3 2 1 5 5 H 1.48494 * 109.47414 * 29.99672 * 3 2 1 6 6 H 1.48498 * 109.46847 * 150.00071 * 3 2 1 7 7 C 1.38947 * 120.00142 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99956 * 199.10009 * 7 2 1 9 9 N 1.37099 * 119.99870 * 19.09905 * 7 2 1 10 10 C 1.34770 * 120.00170 * 42.78960 * 9 7 2 11 11 O 1.21300 * 120.00038 * 0.27243 * 10 9 7 12 12 C 1.50703 * 120.00336 * 180.27337 * 10 9 7 13 13 C 1.52994 * 109.47124 * 179.97438 * 12 10 9 14 14 N 1.46500 * 109.47249 * 180.02562 * 13 12 10 15 15 C 1.34770 * 120.00461 * 180.02562 * 14 13 12 16 16 O 1.21288 * 119.99889 * 0.02562 * 15 14 13 17 17 C 1.50703 * 120.00336 * 179.97438 * 15 14 13 18 18 C 1.50700 * 109.47057 * 179.97438 * 17 15 14 19 19 C 1.38234 * 120.00013 * 269.72589 * 18 17 15 20 20 C 1.38237 * 120.00092 * 179.76870 * 19 18 17 21 21 C 1.38243 * 119.99715 * 0.51019 * 20 19 18 22 22 C 1.38235 * 120.00041 * 359.74284 * 21 20 19 23 23 C 1.38232 * 119.99753 * 0.02562 * 22 21 20 24 24 C 1.46506 * 119.99922 * 223.06199 * 9 7 2 25 25 C 1.54264 * 110.02886 * 59.61200 * 24 9 7 26 26 C 1.54972 * 104.15777 * 217.13356 * 25 24 9 27 27 C 1.54889 * 102.77417 * 37.89301 * 26 25 24 28 28 C 1.53878 * 110.03000 * 302.39586 * 24 9 7 29 29 H 0.96997 * 120.00006 * 354.78176 * 1 2 3 30 30 H 1.08993 * 109.46984 * 299.99925 * 12 10 9 31 31 H 1.09005 * 109.46838 * 60.00073 * 12 10 9 32 32 H 1.08996 * 109.47870 * 300.00459 * 13 12 10 33 33 H 1.09005 * 109.46811 * 60.00537 * 13 12 10 34 34 H 0.97005 * 119.99778 * 0.02562 * 14 13 12 35 35 H 1.08993 * 109.46984 * 299.99925 * 17 15 14 36 36 H 1.08999 * 109.46947 * 59.99657 * 17 15 14 37 37 H 1.08002 * 120.00125 * 359.97438 * 19 18 17 38 38 H 1.08003 * 119.99938 * 180.22644 * 20 19 18 39 39 H 1.07992 * 119.99706 * 179.72656 * 21 20 19 40 40 H 1.07995 * 120.00013 * 179.97438 * 22 21 20 41 41 H 1.08007 * 119.99953 * 179.97438 * 23 22 21 42 42 H 1.09003 * 110.01441 * 181.00517 * 24 9 7 43 43 H 1.08995 * 110.48992 * 335.78378 * 25 24 9 44 44 H 1.09000 * 110.48161 * 98.43108 * 25 24 9 45 45 H 1.08998 * 110.71881 * 279.57863 * 26 25 24 46 46 H 1.08995 * 110.92026 * 156.29827 * 26 25 24 47 47 H 1.09000 * 110.48390 * 203.40667 * 27 26 25 48 48 H 1.08995 * 110.60199 * 80.81730 * 27 26 25 49 49 H 1.08998 * 110.02945 * 238.56473 * 28 24 9 50 50 H 1.08996 * 110.03085 * 359.97438 * 28 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0464 -1.4000 5 1 1.4456 2.6527 0.6999 6 1 3.5456 1.4402 0.7000 7 6 2.0090 -1.2033 0.0005 8 1 3.0444 -1.2289 0.3066 9 7 1.3801 -2.3581 -0.3874 10 6 0.5743 -2.3564 -1.4677 11 8 0.4093 -1.3342 -2.0997 12 6 -0.1219 -3.6243 -1.8906 13 6 -0.9691 -3.3503 -3.1347 14 7 -1.6464 -4.5828 -3.5455 15 6 -2.4523 -4.5810 -4.6257 16 8 -2.6165 -3.5592 -5.2581 17 6 -3.1485 -5.8489 -5.0486 18 6 -3.9831 -5.5790 -6.2740 19 6 -5.3000 -5.1810 -6.1393 20 6 -6.0642 -4.9288 -7.2633 21 6 -5.5145 -5.0848 -8.5221 22 6 -4.1991 -5.4878 -8.6568 23 6 -3.4336 -5.7354 -7.5327 24 6 1.5793 -3.5927 0.3758 25 6 1.1192 -3.3921 1.8345 26 6 2.1446 -4.1999 2.6699 27 6 3.4754 -3.9426 1.9204 28 6 3.0767 -3.9429 0.4302 29 1 -0.4850 0.8365 0.0764 30 1 0.6214 -4.3884 -2.1178 31 1 -0.7655 -3.9722 -1.0826 32 1 -1.7124 -2.5863 -2.9073 33 1 -0.3258 -3.0022 -3.9429 34 1 -1.5148 -5.4001 -3.0399 35 1 -2.4052 -6.6130 -5.2758 36 1 -3.7919 -6.1969 -4.2405 37 1 -5.7310 -5.0639 -5.1560 38 1 -7.0921 -4.6143 -7.1581 39 1 -6.1128 -4.8920 -9.4002 40 1 -3.7698 -5.6101 -9.6402 41 1 -2.4059 -6.0507 -7.6379 42 1 1.0213 -4.4090 -0.0828 43 1 1.1549 -2.3366 2.1041 44 1 0.1139 -3.7891 1.9754 45 1 1.8965 -5.2612 2.6634 46 1 2.1974 -3.8232 3.6913 47 1 4.1887 -4.7412 2.1246 48 1 3.8943 -2.9768 2.2030 49 1 3.2452 -4.9296 -0.0012 50 1 3.6550 -3.1946 -0.1117 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000125294031.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:51:58 Heat of formation + Delta-G solvation = -49.049113 kcal Electronic energy + Delta-G solvation = -29634.791167 eV Core-core repulsion = 25626.554848 eV Total energy + Delta-G solvation = -4008.236320 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -39.99754 -38.99372 -38.58077 -36.80870 -34.81895 -33.27698 -32.98628 -31.67982 -30.98441 -30.22298 -28.08743 -27.66682 -26.85448 -25.03083 -22.92135 -22.68709 -21.62284 -20.36042 -20.11999 -19.80364 -18.98043 -17.05941 -16.91965 -16.38840 -15.94558 -15.81180 -15.57582 -15.10067 -14.92779 -14.88919 -14.40605 -14.14321 -14.02764 -13.50528 -13.47956 -13.44257 -13.12004 -12.81412 -12.61953 -12.51835 -12.24426 -12.05607 -11.44766 -11.28232 -11.22271 -11.15386 -11.09826 -10.99206 -10.79258 -10.63710 -10.61840 -10.49690 -10.41142 -10.19216 -10.04926 -9.81201 -9.76610 -8.99449 -8.81846 -8.81185 -8.69537 -8.02787 -7.04728 -6.07151 -3.79669 1.23252 1.32911 2.78610 3.27651 3.34091 3.40440 3.45072 3.78715 4.20482 4.40158 4.51069 4.69726 4.89267 4.92281 4.98253 5.00028 5.11528 5.17041 5.22003 5.28382 5.34005 5.40278 5.44683 5.48672 5.53150 5.70816 5.80261 5.88245 5.89711 5.93664 6.02987 6.10072 6.12820 6.21308 6.28843 6.34551 6.40551 6.40918 6.44422 6.46186 6.48280 6.49513 6.59640 6.71146 6.79682 6.90303 6.94217 7.19327 7.65261 7.68685 8.32299 8.39391 9.11008 9.21772 9.72328 10.34139 11.02248 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.014354 B = 0.002272 C = 0.002057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1950.185715 B =12322.542764 C =13606.702508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.073 3.927 3 Si 0.908 3.092 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.275 1.275 7 C -0.343 4.343 8 H 0.078 0.922 9 N -0.448 5.448 10 C 0.477 3.523 11 O -0.532 6.532 12 C -0.145 4.145 13 C 0.139 3.861 14 N -0.731 5.731 15 C 0.508 3.492 16 O -0.529 6.529 17 C -0.103 4.103 18 C -0.063 4.063 19 C -0.106 4.106 20 C -0.120 4.120 21 C -0.123 4.123 22 C -0.120 4.120 23 C -0.106 4.106 24 C 0.130 3.870 25 C -0.125 4.125 26 C -0.123 4.123 27 C -0.117 4.117 28 C -0.131 4.131 29 H 0.263 0.737 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.396 0.604 35 H 0.101 0.899 36 H 0.102 0.898 37 H 0.120 0.880 38 H 0.121 0.879 39 H 0.119 0.881 40 H 0.120 0.880 41 H 0.120 0.880 42 H 0.066 0.934 43 H 0.091 0.909 44 H 0.050 0.950 45 H 0.056 0.944 46 H 0.058 0.942 47 H 0.052 0.948 48 H 0.065 0.935 49 H 0.051 0.949 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.674 -17.295 -5.626 19.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.465 5.465 2 C -0.137 4.137 3 Si 0.736 3.264 4 H -0.204 1.204 5 H -0.215 1.215 6 H -0.200 1.200 7 C -0.469 4.469 8 H 0.095 0.905 9 N -0.170 5.170 10 C 0.263 3.737 11 O -0.410 6.410 12 C -0.187 4.187 13 C 0.016 3.984 14 N -0.383 5.383 15 C 0.294 3.706 16 O -0.405 6.405 17 C -0.143 4.143 18 C -0.064 4.064 19 C -0.124 4.124 20 C -0.138 4.138 21 C -0.141 4.141 22 C -0.138 4.138 23 C -0.124 4.124 24 C 0.025 3.975 25 C -0.163 4.163 26 C -0.161 4.161 27 C -0.155 4.155 28 C -0.169 4.169 29 H 0.073 0.927 30 H 0.095 0.905 31 H 0.097 0.903 32 H 0.094 0.906 33 H 0.090 0.910 34 H 0.229 0.771 35 H 0.120 0.880 36 H 0.120 0.880 37 H 0.138 0.862 38 H 0.139 0.861 39 H 0.137 0.863 40 H 0.138 0.862 41 H 0.138 0.862 42 H 0.084 0.916 43 H 0.109 0.891 44 H 0.069 0.931 45 H 0.074 0.926 46 H 0.076 0.924 47 H 0.071 0.929 48 H 0.084 0.916 49 H 0.070 0.930 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -6.040 -15.863 -6.487 18.171 hybrid contribution 0.419 0.378 0.485 0.744 sum -5.621 -15.484 -6.002 17.533 Atomic orbital electron populations 1.69817 1.06486 1.27280 1.42928 1.25196 0.94750 0.99238 0.94563 0.86286 0.79294 0.82583 0.78284 1.20417 1.21466 1.20033 1.18799 0.94929 0.84004 1.49213 0.90456 1.43370 1.43976 1.07425 1.22223 1.19562 0.83656 0.88432 0.82014 1.90565 1.62656 1.33628 1.54131 1.21786 0.99391 0.99827 0.97669 1.21067 0.95900 0.85132 0.96281 1.46134 1.48312 1.13819 1.30049 1.20450 0.79391 0.90305 0.80488 1.90761 1.62131 1.34103 1.53466 1.20701 0.99574 0.96818 0.97246 1.19298 0.93945 0.99452 0.93673 1.21001 0.93748 0.98795 0.98816 1.21101 0.99901 1.00196 0.92606 1.21127 0.95592 1.00068 0.97353 1.21091 0.94407 0.99907 0.98439 1.20987 0.99436 0.99937 0.92017 1.21694 0.94501 0.88763 0.92584 1.22662 0.96764 1.02297 0.94627 1.22450 0.95930 0.99146 0.98533 1.22257 0.96782 1.00923 0.95544 1.22454 0.97564 1.00455 0.96461 0.92719 0.90548 0.90348 0.90633 0.90983 0.77058 0.88026 0.88009 0.86209 0.86142 0.86287 0.86162 0.86247 0.91634 0.89078 0.93080 0.92570 0.92368 0.92947 0.91591 0.92992 0.90619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -24.28 11.67 55.50 0.65 -23.63 16 2 C 0.07 2.02 4.35 -17.47 -0.08 1.94 16 3 Si 0.91 21.96 29.60 -169.99 -5.03 16.93 16 4 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.34 -8.99 7.45 -14.93 -0.11 -9.10 16 8 H 0.08 1.98 7.08 -52.49 -0.37 1.61 16 9 N -0.45 -10.53 2.46 -106.54 -0.26 -10.79 16 10 C 0.48 11.58 6.96 -10.99 -0.08 11.50 16 11 O -0.53 -15.47 13.64 5.54 0.08 -15.39 16 12 C -0.15 -2.57 4.13 -27.88 -0.12 -2.69 16 13 C 0.14 2.52 4.96 -4.04 -0.02 2.50 16 14 N -0.73 -9.79 5.56 -60.30 -0.33 -10.12 16 15 C 0.51 7.33 7.82 -10.99 -0.09 7.24 16 16 O -0.53 -10.37 16.03 5.55 0.09 -10.29 16 17 C -0.10 -1.01 5.83 -29.03 -0.17 -1.18 16 18 C -0.06 -0.73 4.37 -104.62 -0.46 -1.19 16 19 C -0.11 -1.20 9.70 -39.58 -0.38 -1.58 16 20 C -0.12 -1.25 10.05 -39.58 -0.40 -1.65 16 21 C -0.12 -1.24 10.05 -39.58 -0.40 -1.64 16 22 C -0.12 -1.24 10.05 -39.58 -0.40 -1.64 16 23 C -0.11 -1.18 9.70 -39.58 -0.38 -1.57 16 24 C 0.13 2.38 3.20 -66.81 -0.21 2.17 16 25 C -0.13 -2.22 6.42 -25.03 -0.16 -2.38 16 26 C -0.12 -1.75 6.91 -24.69 -0.17 -1.92 16 27 C -0.12 -1.71 6.83 -25.07 -0.17 -1.89 16 28 C -0.13 -2.13 6.19 -25.61 -0.16 -2.29 16 29 H 0.26 7.47 8.32 -40.82 -0.34 7.13 16 30 H 0.08 1.14 7.77 -51.93 -0.40 0.73 16 31 H 0.08 1.27 7.82 -51.93 -0.41 0.86 16 32 H 0.08 1.62 8.10 -51.93 -0.42 1.20 16 33 H 0.07 1.46 8.10 -51.93 -0.42 1.04 16 34 H 0.40 3.75 8.47 -40.82 -0.35 3.40 16 35 H 0.10 0.73 8.09 -51.93 -0.42 0.31 16 36 H 0.10 0.75 8.08 -51.93 -0.42 0.33 16 37 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 38 H 0.12 0.99 8.06 -52.48 -0.42 0.57 16 39 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 40 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 41 H 0.12 1.15 8.06 -52.48 -0.42 0.73 16 42 H 0.07 1.05 5.82 -51.93 -0.30 0.75 16 43 H 0.09 1.97 7.10 -51.93 -0.37 1.60 16 44 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 45 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 46 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 47 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 48 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 49 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 50 H 0.08 1.41 6.85 -51.93 -0.36 1.05 16 LS Contribution 406.02 15.07 6.12 6.12 Total: -1.00 -35.57 406.02 -10.67 -46.24 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: -8.02 Total: 6.29 kcal Atomic # 6 Polarization: -1.40 SS G_CDS: -3.95 Total: -5.35 kcal Atomic # 7 Polarization: -44.60 SS G_CDS: 0.05 Total: -44.54 kcal Atomic # 8 Polarization: -25.84 SS G_CDS: 0.16 Total: -25.68 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.03 Total: 16.93 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -35.57 -10.67 -46.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125294031.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.812 kcal (2) G-P(sol) polarization free energy of solvation -35.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds