Wall clock time and date at job start Wed Apr 1 2020 03:51:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31419 * 1 3 3 Si 1.86802 * 119.99697 * 2 1 4 4 H 1.48494 * 109.46932 * 269.99603 * 3 2 1 5 5 H 1.48494 * 109.47414 * 29.99672 * 3 2 1 6 6 H 1.48498 * 109.46847 * 150.00071 * 3 2 1 7 7 C 1.38947 * 120.00142 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99956 * 199.10009 * 7 2 1 9 9 N 1.37099 * 119.99870 * 19.09905 * 7 2 1 10 10 C 1.34770 * 120.00170 * 42.78960 * 9 7 2 11 11 O 1.21300 * 120.00038 * 0.27243 * 10 9 7 12 12 C 1.50703 * 120.00336 * 180.27337 * 10 9 7 13 13 C 1.52994 * 109.47124 * 179.97438 * 12 10 9 14 14 N 1.46500 * 109.47249 * 180.02562 * 13 12 10 15 15 C 1.34770 * 120.00461 * 180.02562 * 14 13 12 16 16 O 1.21288 * 119.99889 * 0.02562 * 15 14 13 17 17 C 1.50703 * 120.00336 * 179.97438 * 15 14 13 18 18 C 1.50700 * 109.47057 * 179.97438 * 17 15 14 19 19 C 1.38234 * 120.00013 * 269.72589 * 18 17 15 20 20 C 1.38237 * 120.00092 * 179.76870 * 19 18 17 21 21 C 1.38243 * 119.99715 * 0.51019 * 20 19 18 22 22 C 1.38235 * 120.00041 * 359.74284 * 21 20 19 23 23 C 1.38232 * 119.99753 * 0.02562 * 22 21 20 24 24 C 1.46506 * 119.99922 * 223.06199 * 9 7 2 25 25 C 1.54264 * 110.02886 * 59.61200 * 24 9 7 26 26 C 1.54972 * 104.15777 * 217.13356 * 25 24 9 27 27 C 1.54889 * 102.77417 * 37.89301 * 26 25 24 28 28 C 1.53878 * 110.03000 * 302.39586 * 24 9 7 29 29 H 0.96997 * 120.00006 * 354.78176 * 1 2 3 30 30 H 1.08993 * 109.46984 * 299.99925 * 12 10 9 31 31 H 1.09005 * 109.46838 * 60.00073 * 12 10 9 32 32 H 1.08996 * 109.47870 * 300.00459 * 13 12 10 33 33 H 1.09005 * 109.46811 * 60.00537 * 13 12 10 34 34 H 0.97005 * 119.99778 * 0.02562 * 14 13 12 35 35 H 1.08993 * 109.46984 * 299.99925 * 17 15 14 36 36 H 1.08999 * 109.46947 * 59.99657 * 17 15 14 37 37 H 1.08002 * 120.00125 * 359.97438 * 19 18 17 38 38 H 1.08003 * 119.99938 * 180.22644 * 20 19 18 39 39 H 1.07992 * 119.99706 * 179.72656 * 21 20 19 40 40 H 1.07995 * 120.00013 * 179.97438 * 22 21 20 41 41 H 1.08007 * 119.99953 * 179.97438 * 23 22 21 42 42 H 1.09003 * 110.01441 * 181.00517 * 24 9 7 43 43 H 1.08995 * 110.48992 * 335.78378 * 25 24 9 44 44 H 1.09000 * 110.48161 * 98.43108 * 25 24 9 45 45 H 1.08998 * 110.71881 * 279.57863 * 26 25 24 46 46 H 1.08995 * 110.92026 * 156.29827 * 26 25 24 47 47 H 1.09000 * 110.48390 * 203.40667 * 27 26 25 48 48 H 1.08995 * 110.60199 * 80.81730 * 27 26 25 49 49 H 1.08998 * 110.02945 * 238.56473 * 28 24 9 50 50 H 1.08996 * 110.03085 * 359.97438 * 28 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0464 -1.4000 5 1 1.4456 2.6527 0.6999 6 1 3.5456 1.4402 0.7000 7 6 2.0090 -1.2033 0.0005 8 1 3.0444 -1.2289 0.3066 9 7 1.3801 -2.3581 -0.3874 10 6 0.5743 -2.3564 -1.4677 11 8 0.4093 -1.3342 -2.0997 12 6 -0.1219 -3.6243 -1.8906 13 6 -0.9691 -3.3503 -3.1347 14 7 -1.6464 -4.5828 -3.5455 15 6 -2.4523 -4.5810 -4.6257 16 8 -2.6165 -3.5592 -5.2581 17 6 -3.1485 -5.8489 -5.0486 18 6 -3.9831 -5.5790 -6.2740 19 6 -5.3000 -5.1810 -6.1393 20 6 -6.0642 -4.9288 -7.2633 21 6 -5.5145 -5.0848 -8.5221 22 6 -4.1991 -5.4878 -8.6568 23 6 -3.4336 -5.7354 -7.5327 24 6 1.5793 -3.5927 0.3758 25 6 1.1192 -3.3921 1.8345 26 6 2.1446 -4.1999 2.6699 27 6 3.4754 -3.9426 1.9204 28 6 3.0767 -3.9429 0.4302 29 1 -0.4850 0.8365 0.0764 30 1 0.6214 -4.3884 -2.1178 31 1 -0.7655 -3.9722 -1.0826 32 1 -1.7124 -2.5863 -2.9073 33 1 -0.3258 -3.0022 -3.9429 34 1 -1.5148 -5.4001 -3.0399 35 1 -2.4052 -6.6130 -5.2758 36 1 -3.7919 -6.1969 -4.2405 37 1 -5.7310 -5.0639 -5.1560 38 1 -7.0921 -4.6143 -7.1581 39 1 -6.1128 -4.8920 -9.4002 40 1 -3.7698 -5.6101 -9.6402 41 1 -2.4059 -6.0507 -7.6379 42 1 1.0213 -4.4090 -0.0828 43 1 1.1549 -2.3366 2.1041 44 1 0.1139 -3.7891 1.9754 45 1 1.8965 -5.2612 2.6634 46 1 2.1974 -3.8232 3.6913 47 1 4.1887 -4.7412 2.1246 48 1 3.8943 -2.9768 2.2030 49 1 3.2452 -4.9296 -0.0012 50 1 3.6550 -3.1946 -0.1117 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000125294031.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:51:57 Heat of formation + Delta-G solvation = -71.523862 kcal Electronic energy + Delta-G solvation = -29635.765746 eV Core-core repulsion = 25626.554848 eV Total energy + Delta-G solvation = -4009.210898 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.08925 -40.55970 -39.59634 -38.35825 -36.22605 -35.10110 -33.88350 -33.52653 -31.74843 -31.68189 -29.38239 -28.68285 -28.31541 -26.76650 -24.44637 -23.46118 -22.61892 -21.62890 -21.33373 -21.21870 -20.68162 -18.40000 -17.97510 -17.70773 -17.53211 -17.03754 -16.84853 -16.46725 -16.22086 -16.05745 -15.85376 -15.60899 -15.33944 -15.05243 -14.64730 -14.36131 -14.22991 -14.13226 -14.00757 -13.83259 -13.35564 -13.24062 -12.97247 -12.91130 -12.82887 -12.70853 -12.43398 -12.24214 -12.16464 -12.03689 -11.98523 -11.84809 -11.78908 -11.72527 -11.31259 -11.24189 -11.03574 -10.71817 -10.13020 -9.97548 -9.78137 -9.61226 -8.99509 -8.16285 -5.88388 0.43257 0.53942 1.34309 1.43419 1.46901 1.66743 2.13065 2.32051 2.52457 2.94117 3.26632 3.29845 3.70065 3.86092 3.93767 3.97284 3.98639 4.12013 4.14035 4.18325 4.19162 4.29326 4.41225 4.42734 4.55397 4.61133 4.67228 4.71363 4.75948 4.80090 4.87217 4.91096 4.96433 4.99819 5.01007 5.15918 5.18149 5.18702 5.23580 5.34636 5.42364 5.48516 5.57737 5.61557 5.62958 5.63888 5.68675 5.74424 6.15076 6.27949 6.61036 7.10828 7.29352 7.32376 7.79703 8.44374 8.93068 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.014354 B = 0.002272 C = 0.002057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1950.185715 B =12322.542764 C =13606.702508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.021 3.979 3 Si 0.957 3.043 4 H -0.296 1.296 5 H -0.285 1.285 6 H -0.253 1.253 7 C -0.339 4.339 8 H 0.078 0.922 9 N -0.459 5.459 10 C 0.457 3.543 11 O -0.594 6.594 12 C -0.125 4.125 13 C 0.156 3.844 14 N -0.712 5.712 15 C 0.505 3.495 16 O -0.589 6.589 17 C -0.090 4.090 18 C -0.084 4.084 19 C -0.125 4.125 20 C -0.133 4.133 21 C -0.132 4.132 22 C -0.132 4.132 23 C -0.123 4.123 24 C 0.120 3.880 25 C -0.126 4.126 26 C -0.110 4.110 27 C -0.115 4.115 28 C -0.127 4.127 29 H 0.254 0.746 30 H 0.118 0.882 31 H 0.103 0.897 32 H 0.031 0.969 33 H 0.042 0.958 34 H 0.421 0.579 35 H 0.136 0.864 36 H 0.133 0.867 37 H 0.128 0.872 38 H 0.138 0.862 39 H 0.141 0.859 40 H 0.139 0.861 41 H 0.131 0.869 42 H 0.099 0.901 43 H 0.042 0.958 44 H 0.059 0.941 45 H 0.089 0.911 46 H 0.064 0.936 47 H 0.085 0.915 48 H 0.043 0.957 49 H 0.087 0.913 50 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.055 -21.396 -4.898 22.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.185 4.185 3 Si 0.784 3.216 4 H -0.224 1.224 5 H -0.211 1.211 6 H -0.177 1.177 7 C -0.467 4.467 8 H 0.095 0.905 9 N -0.180 5.180 10 C 0.246 3.754 11 O -0.476 6.476 12 C -0.166 4.166 13 C 0.031 3.969 14 N -0.365 5.365 15 C 0.293 3.707 16 O -0.468 6.468 17 C -0.129 4.129 18 C -0.084 4.084 19 C -0.143 4.143 20 C -0.151 4.151 21 C -0.150 4.150 22 C -0.150 4.150 23 C -0.141 4.141 24 C 0.016 3.984 25 C -0.165 4.165 26 C -0.148 4.148 27 C -0.153 4.153 28 C -0.166 4.166 29 H 0.063 0.937 30 H 0.136 0.864 31 H 0.121 0.879 32 H 0.050 0.950 33 H 0.060 0.940 34 H 0.259 0.741 35 H 0.154 0.846 36 H 0.151 0.849 37 H 0.146 0.854 38 H 0.155 0.845 39 H 0.158 0.842 40 H 0.157 0.843 41 H 0.148 0.852 42 H 0.116 0.884 43 H 0.061 0.939 44 H 0.078 0.922 45 H 0.107 0.893 46 H 0.083 0.917 47 H 0.103 0.897 48 H 0.062 0.938 49 H 0.106 0.894 50 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -5.382 -20.049 -5.690 21.524 hybrid contribution 0.247 1.601 0.215 1.634 sum -5.135 -18.448 -5.475 19.916 Atomic orbital electron populations 1.69925 1.07777 1.27050 1.45687 1.25917 0.95361 1.02197 0.95017 0.85503 0.79300 0.79629 0.77203 1.22378 1.21134 1.17720 1.18981 0.95012 0.85316 1.47388 0.90484 1.43646 1.43291 1.08417 1.22645 1.20676 0.83355 0.89894 0.81511 1.90532 1.64594 1.36456 1.56047 1.21608 0.99988 0.97208 0.97773 1.20534 0.94499 0.86234 0.95648 1.45841 1.47472 1.13101 1.30127 1.21374 0.78583 0.91173 0.79535 1.90744 1.64030 1.36742 1.55329 1.20737 1.00187 0.94527 0.97467 1.19591 0.94364 0.99911 0.94547 1.21286 0.94235 0.99190 0.99595 1.21430 1.00873 1.00049 0.92742 1.21472 0.95888 0.99527 0.98093 1.21434 0.94699 0.99585 0.99283 1.21288 1.00188 1.00262 0.92366 1.22084 0.96716 0.87168 0.92408 1.22594 0.98645 1.00109 0.95122 1.22414 0.94019 1.00328 0.98000 1.22256 0.97699 1.01058 0.94282 1.22429 0.95247 1.01303 0.97591 0.93677 0.86362 0.87883 0.95039 0.93957 0.74105 0.84613 0.84931 0.85440 0.84461 0.84164 0.84299 0.85157 0.88354 0.93870 0.92218 0.89275 0.91741 0.89688 0.93777 0.89439 0.93673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -53.28 11.67 21.66 0.25 -53.02 16 2 C 0.02 1.20 4.35 84.92 0.37 1.57 16 3 Si 0.96 46.81 29.60 68.60 2.03 48.84 16 4 H -0.30 -15.27 7.11 99.48 0.71 -14.56 16 5 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 6 H -0.25 -11.33 7.11 99.48 0.71 -10.62 16 7 C -0.34 -18.26 7.45 84.04 0.63 -17.63 16 8 H 0.08 4.05 7.08 -2.91 -0.02 4.03 16 9 N -0.46 -21.67 2.46 -609.36 -1.50 -23.16 16 10 C 0.46 22.53 6.96 87.66 0.61 23.14 16 11 O -0.59 -36.31 13.64 -3.09 -0.04 -36.35 16 12 C -0.13 -4.22 4.13 29.85 0.12 -4.09 16 13 C 0.16 5.71 4.96 86.38 0.43 6.13 16 14 N -0.71 -17.76 5.56 -463.07 -2.57 -20.33 16 15 C 0.51 14.05 7.82 87.66 0.69 14.73 16 16 O -0.59 -23.73 16.03 -3.05 -0.05 -23.78 16 17 C -0.09 -1.51 5.83 29.10 0.17 -1.34 16 18 C -0.08 -1.83 4.37 -19.87 -0.09 -1.92 16 19 C -0.13 -2.74 9.70 22.27 0.22 -2.52 16 20 C -0.13 -2.68 10.05 22.27 0.22 -2.46 16 21 C -0.13 -2.51 10.05 22.27 0.22 -2.29 16 22 C -0.13 -2.60 10.05 22.27 0.22 -2.38 16 23 C -0.12 -2.62 9.70 22.27 0.22 -2.41 16 24 C 0.12 4.13 3.20 45.72 0.15 4.28 16 25 C -0.13 -4.28 6.42 31.70 0.20 -4.08 16 26 C -0.11 -2.73 6.91 31.91 0.22 -2.51 16 27 C -0.12 -3.00 6.83 31.67 0.22 -2.78 16 28 C -0.13 -3.77 6.19 31.32 0.19 -3.58 16 29 H 0.25 15.31 8.32 -92.71 -0.77 14.54 16 30 H 0.12 3.02 7.77 -2.39 -0.02 3.00 16 31 H 0.10 3.01 7.82 -2.38 -0.02 2.99 16 32 H 0.03 1.42 8.10 -2.39 -0.02 1.40 16 33 H 0.04 1.79 8.10 -2.38 -0.02 1.77 16 34 H 0.42 6.27 8.47 -92.70 -0.79 5.49 16 35 H 0.14 1.37 8.09 -2.39 -0.02 1.35 16 36 H 0.13 1.43 8.08 -2.39 -0.02 1.41 16 37 H 0.13 2.43 8.06 -2.91 -0.02 2.41 16 38 H 0.14 2.14 8.06 -2.91 -0.02 2.12 16 39 H 0.14 1.94 8.06 -2.91 -0.02 1.91 16 40 H 0.14 2.06 8.06 -2.91 -0.02 2.04 16 41 H 0.13 2.34 8.06 -2.91 -0.02 2.31 16 42 H 0.10 2.72 5.82 -2.39 -0.01 2.70 16 43 H 0.04 1.88 7.10 -2.39 -0.02 1.87 16 44 H 0.06 1.87 8.14 -2.39 -0.02 1.86 16 45 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 46 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 47 H 0.08 1.69 8.14 -2.39 -0.02 1.68 16 48 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 49 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 50 H 0.04 1.62 6.85 -2.39 -0.02 1.60 16 Total: -1.00 -86.40 406.02 3.28 -83.12 By element: Atomic # 1 Polarization: 24.68 SS G_CDS: 0.15 Total: 24.83 kcal Atomic # 6 Polarization: -5.14 SS G_CDS: 5.01 Total: -0.13 kcal Atomic # 7 Polarization: -92.70 SS G_CDS: -3.82 Total: -96.52 kcal Atomic # 8 Polarization: -60.05 SS G_CDS: -0.09 Total: -60.14 kcal Atomic # 14 Polarization: 46.81 SS G_CDS: 2.03 Total: 48.84 kcal Total: -86.40 3.28 -83.12 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125294031.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.597 kcal (2) G-P(sol) polarization free energy of solvation -86.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds