Wall clock time and date at job start Wed Apr 1 2020 02:32:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86790 * 120.00472 * 2 1 4 4 H 1.48502 * 109.47498 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47182 * 299.99915 * 3 2 1 6 6 H 1.48494 * 109.47265 * 59.99642 * 3 2 1 7 7 C 1.37881 * 119.99520 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99929 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00252 * 0.02562 * 7 2 1 10 10 N 1.46896 * 109.47374 * 184.38796 * 9 7 2 11 11 C 1.46898 * 111.00402 * 195.95310 * 10 9 7 12 12 C 1.53005 * 109.46738 * 66.04465 * 11 10 9 13 13 N 1.46897 * 109.47057 * 180.02562 * 12 11 10 14 14 C 1.47015 * 110.99640 * 293.63342 * 13 12 11 15 15 C 1.53101 * 109.25798 * 177.60951 * 14 13 12 16 16 O 1.43012 * 109.26128 * 56.84431 * 15 14 13 17 17 C 1.43015 * 113.73955 * 301.33422 * 16 15 14 18 18 C 1.47012 * 111.00038 * 169.99965 * 13 12 11 19 19 C 1.46908 * 111.00171 * 71.99710 * 10 9 7 20 20 C 1.50694 * 109.47066 * 199.97659 * 19 10 9 21 21 C 1.33998 * 126.90446 * 254.24814 * 20 19 10 22 22 O 1.34451 * 110.15423 * 179.97438 * 21 20 19 23 23 C 1.34804 * 110.88709 * 0.02562 * 22 21 20 24 24 C 1.38946 * 133.49096 * 179.97438 * 23 22 21 25 25 C 1.37846 * 119.81578 * 179.97438 * 24 23 22 26 26 C 1.38744 * 120.68906 * 0.02562 * 25 24 23 27 27 C 1.36739 * 120.41201 * 359.97132 * 26 25 24 28 28 C 1.39407 * 119.71887 * 359.76509 * 27 26 25 29 29 H 0.97000 * 119.99626 * 0.02562 * 1 2 3 30 30 H 1.08995 * 109.47292 * 64.37990 * 9 7 2 31 31 H 1.09003 * 109.46410 * 304.38131 * 9 7 2 32 32 H 1.08999 * 109.46948 * 306.04710 * 11 10 9 33 33 H 1.08996 * 109.47648 * 186.04275 * 11 10 9 34 34 H 1.08995 * 109.47174 * 59.99902 * 12 11 10 35 35 H 1.09009 * 109.47046 * 300.00148 * 12 11 10 36 36 H 1.09004 * 109.50906 * 297.53836 * 14 13 12 37 37 H 1.08994 * 109.50763 * 57.67622 * 14 13 12 38 38 H 1.09006 * 109.50500 * 296.91205 * 15 14 13 39 39 H 1.08999 * 109.54510 * 176.80707 * 15 14 13 40 40 H 1.09002 * 109.50878 * 298.72868 * 17 16 15 41 41 H 1.09000 * 109.54275 * 178.62007 * 17 16 15 42 42 H 1.08996 * 109.50833 * 302.32270 * 18 13 12 43 43 H 1.08995 * 109.51044 * 62.41549 * 18 13 12 44 44 H 1.08998 * 109.46817 * 319.97892 * 19 10 9 45 45 H 1.09000 * 109.46534 * 79.97733 * 19 10 9 46 46 H 1.08000 * 124.92822 * 359.96041 * 21 20 19 47 47 H 1.08003 * 120.09459 * 359.97438 * 24 23 22 48 48 H 1.08001 * 119.65736 * 179.97438 * 25 24 23 49 49 H 1.07996 * 119.79557 * 179.97438 * 26 25 24 50 50 H 1.08001 * 120.13823 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7093 1.3462 0.0006 5 1 1.8906 2.3963 -1.2125 6 1 1.8905 2.3963 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2018 -3.6138 0.1071 11 6 1.5667 -4.8852 -0.2643 12 6 1.2024 -4.8583 -1.7501 13 7 0.5666 -6.1294 -2.1215 14 6 1.5200 -7.2441 -2.0220 15 6 0.8025 -8.5539 -2.3590 16 8 0.2224 -8.4523 -3.6622 17 6 -0.7117 -7.3774 -3.7944 18 6 -0.0095 -6.0556 -3.4720 19 6 2.7776 -3.6874 1.4567 20 6 4.0599 -4.4777 1.4132 21 6 4.2495 -5.7287 1.8546 22 8 5.5240 -6.1043 1.6490 23 6 6.2281 -5.1151 1.0634 24 6 7.5495 -4.9969 0.6505 25 6 7.9832 -3.8255 0.0675 26 6 7.1135 -2.7596 -0.1122 27 6 5.8092 -2.8555 0.2871 28 6 5.3510 -4.0342 0.8737 29 1 -0.4849 0.8401 -0.0004 30 1 0.6848 -2.5919 -0.9262 31 1 0.5664 -2.5234 0.8485 32 1 0.6632 -5.0269 0.3288 33 1 2.2582 -5.7060 -0.0746 34 1 2.1058 -4.7165 -2.3432 35 1 0.5107 -4.0374 -1.9398 36 1 2.3387 -7.0866 -2.7243 37 1 1.9148 -7.2959 -1.0074 38 1 0.0182 -8.7385 -1.6248 39 1 1.5177 -9.3763 -2.3420 40 1 -1.5401 -7.5277 -3.1020 41 1 -1.0916 -7.3480 -4.8156 42 1 -0.7311 -5.2399 -3.5158 43 1 0.7846 -5.8784 -4.1973 44 1 2.9835 -2.6804 1.8192 45 1 2.0712 -4.1776 2.1267 46 1 3.4889 -6.3457 2.3097 47 1 8.2350 -5.8204 0.7861 48 1 9.0110 -3.7363 -0.2521 49 1 7.4688 -1.8484 -0.5703 50 1 5.1359 -2.0232 0.1447 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000156425317.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:32:47 Heat of formation + Delta-G solvation = 1.378993 kcal Electronic energy + Delta-G solvation = -30741.888228 eV Core-core repulsion = 26735.838635 eV Total energy + Delta-G solvation = -4006.049593 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.17053 -39.53913 -37.60090 -37.30235 -35.44231 -33.05871 -32.33348 -31.22313 -30.24589 -29.65308 -29.17379 -27.16704 -26.26478 -24.22260 -23.89017 -23.05862 -22.28656 -22.01849 -20.50203 -20.01044 -19.40081 -17.07191 -16.86208 -16.55699 -16.37998 -16.12274 -15.86795 -15.51398 -15.15515 -15.06172 -14.97360 -14.48404 -14.38367 -13.89202 -13.79141 -13.59416 -13.53273 -13.00144 -12.85901 -12.47940 -12.27581 -12.10006 -12.04235 -11.82439 -11.68580 -11.40643 -11.35509 -11.24462 -10.98903 -10.85583 -10.66487 -10.56990 -10.52412 -10.18510 -9.83508 -9.70356 -9.60009 -9.23859 -8.47900 -8.39868 -8.26844 -7.88804 -7.32126 -6.07517 -4.08891 1.17015 1.60333 2.60654 3.02917 3.26810 3.35161 3.38377 3.73218 3.89944 3.99232 4.38716 4.74659 4.84153 4.87219 4.96695 5.03020 5.07033 5.13341 5.15204 5.24977 5.28054 5.34318 5.41995 5.47723 5.53468 5.57769 5.61710 5.69172 5.69564 5.80769 5.82420 5.88815 5.93577 5.97765 6.06662 6.21187 6.32831 6.41180 6.42113 6.47943 6.56781 6.72124 6.80399 6.89112 7.01138 7.06389 7.13810 7.23071 7.31274 7.41948 7.78325 8.03404 8.11655 8.48291 8.99546 9.55661 11.02801 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.006391 B = 0.004572 C = 0.002972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4380.083176 B = 6122.714917 C = 9418.693676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.505 4.505 8 H 0.063 0.937 9 C 0.190 3.810 10 N -0.530 5.530 11 C 0.064 3.936 12 C 0.061 3.939 13 N -0.537 5.537 14 C 0.016 3.984 15 C 0.065 3.935 16 O -0.389 6.389 17 C 0.065 3.935 18 C 0.018 3.982 19 C 0.128 3.872 20 C -0.137 4.137 21 C -0.019 4.019 22 O -0.200 6.200 23 C 0.044 3.956 24 C -0.119 4.119 25 C -0.097 4.097 26 C -0.147 4.147 27 C -0.048 4.048 28 C -0.106 4.106 29 H 0.261 0.739 30 H 0.032 0.968 31 H -0.004 1.004 32 H 0.031 0.969 33 H 0.057 0.943 34 H 0.040 0.960 35 H 0.085 0.915 36 H 0.040 0.960 37 H 0.086 0.914 38 H 0.058 0.942 39 H 0.094 0.906 40 H 0.059 0.941 41 H 0.095 0.905 42 H 0.087 0.913 43 H 0.041 0.959 44 H 0.097 0.903 45 H 0.033 0.967 46 H 0.200 0.800 47 H 0.124 0.876 48 H 0.128 0.872 49 H 0.125 0.875 50 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.894 -13.721 -1.233 15.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.543 4.543 8 H 0.081 0.919 9 C 0.066 3.934 10 N -0.255 5.255 11 C -0.065 4.065 12 C -0.066 4.066 13 N -0.263 5.263 14 C -0.112 4.112 15 C -0.012 4.012 16 O -0.308 6.308 17 C -0.012 4.012 18 C -0.110 4.110 19 C 0.000 4.000 20 C -0.139 4.139 21 C -0.085 4.085 22 O -0.102 6.102 23 C -0.003 4.003 24 C -0.138 4.138 25 C -0.115 4.115 26 C -0.165 4.165 27 C -0.066 4.066 28 C -0.107 4.107 29 H 0.070 0.930 30 H 0.050 0.950 31 H 0.014 0.986 32 H 0.049 0.951 33 H 0.076 0.924 34 H 0.059 0.941 35 H 0.104 0.896 36 H 0.059 0.941 37 H 0.105 0.895 38 H 0.076 0.924 39 H 0.112 0.888 40 H 0.077 0.923 41 H 0.113 0.887 42 H 0.106 0.894 43 H 0.059 0.941 44 H 0.115 0.885 45 H 0.051 0.949 46 H 0.217 0.783 47 H 0.142 0.858 48 H 0.146 0.854 49 H 0.143 0.857 50 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 6.883 -13.957 -1.321 15.618 hybrid contribution 0.178 1.313 0.183 1.337 sum 7.061 -12.644 -1.138 14.527 Atomic orbital electron populations 1.69963 1.06023 1.26662 1.51020 1.24971 0.94810 0.99204 0.95486 0.86519 0.80167 0.83692 0.77538 1.19602 1.21071 1.21128 1.21178 0.93471 0.89783 1.49900 0.91857 1.19823 0.89858 0.87241 0.96498 1.61962 1.36494 1.03186 1.23861 1.21914 0.96777 0.93109 0.94705 1.22144 0.98116 0.89896 0.96437 1.62186 1.34370 1.04677 1.25043 1.22802 0.94327 0.91852 1.02232 1.22663 0.97151 0.96625 0.84802 1.87948 1.59823 1.51255 1.31781 1.22663 0.91332 0.85424 1.01782 1.22751 0.99538 0.98966 0.89748 1.20314 0.89325 0.99680 0.90636 1.21376 0.95566 0.94885 1.02098 1.23648 0.83928 0.96245 1.04630 1.83945 1.21028 1.39033 1.66173 1.19666 0.93924 0.87378 0.99318 1.19790 0.91138 0.99335 1.03512 1.20848 0.99635 0.92352 0.98692 1.20779 0.93697 0.99277 1.02772 1.20585 0.95385 0.96572 0.94066 1.19764 0.92918 0.95270 1.02771 0.92978 0.94969 0.98619 0.95123 0.92444 0.94140 0.89643 0.94132 0.89544 0.92391 0.88784 0.92315 0.88663 0.89427 0.94064 0.88461 0.94863 0.78308 0.85753 0.85404 0.85723 0.84496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.68 13.29 55.43 0.74 -24.94 16 2 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 3 Si 0.89 20.90 29.54 -169.99 -5.02 15.88 16 4 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 5 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.50 -13.30 8.30 -34.44 -0.29 -13.59 16 8 H 0.06 1.65 7.11 -52.48 -0.37 1.28 16 9 C 0.19 4.62 4.59 -4.98 -0.02 4.60 16 10 N -0.53 -10.65 4.37 -237.52 -1.04 -11.68 16 11 C 0.06 1.11 4.72 -3.82 -0.02 1.09 16 12 C 0.06 1.04 4.92 -3.82 -0.02 1.02 16 13 N -0.54 -7.81 4.73 -234.30 -1.11 -8.92 16 14 C 0.02 0.21 5.44 -3.71 -0.02 0.19 16 15 C 0.06 0.73 7.01 37.21 0.26 0.99 16 16 O -0.39 -5.02 10.83 -35.23 -0.38 -5.40 16 17 C 0.06 0.74 7.01 37.21 0.26 1.00 16 18 C 0.02 0.24 5.65 -3.71 -0.02 0.22 16 19 C 0.13 2.36 5.38 -4.97 -0.03 2.33 16 20 C -0.14 -2.28 5.22 -102.66 -0.54 -2.82 16 21 C -0.02 -0.28 11.51 29.24 0.34 0.06 16 22 O -0.20 -3.04 10.58 3.92 0.04 -3.00 16 23 C 0.04 0.70 7.42 -38.47 -0.29 0.41 16 24 C -0.12 -1.58 10.07 -39.46 -0.40 -1.98 16 25 C -0.10 -1.19 10.01 -39.54 -0.40 -1.59 16 26 C -0.15 -2.05 9.98 -39.94 -0.40 -2.45 16 27 C -0.05 -0.81 10.05 -39.69 -0.40 -1.21 16 28 C -0.11 -1.82 6.38 -105.16 -0.67 -2.49 16 29 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 30 H 0.03 0.83 5.94 -51.93 -0.31 0.52 16 31 H 0.00 -0.11 8.05 -51.93 -0.42 -0.53 16 32 H 0.03 0.55 8.12 -51.93 -0.42 0.13 16 33 H 0.06 0.92 5.52 -51.93 -0.29 0.63 16 34 H 0.04 0.73 8.12 -51.93 -0.42 0.31 16 35 H 0.09 1.62 6.18 -51.92 -0.32 1.30 16 36 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.09 1.08 6.38 -51.93 -0.33 0.75 16 38 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 42 H 0.09 1.11 8.09 -51.93 -0.42 0.69 16 43 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 44 H 0.10 1.99 7.11 -51.93 -0.37 1.62 16 45 H 0.03 0.57 7.99 -51.93 -0.41 0.15 16 46 H 0.20 2.07 8.06 -52.49 -0.42 1.65 16 47 H 0.12 1.32 8.06 -52.48 -0.42 0.90 16 48 H 0.13 1.16 8.06 -52.49 -0.42 0.73 16 49 H 0.12 1.48 8.06 -52.49 -0.42 1.05 16 50 H 0.14 2.50 7.37 -52.49 -0.39 2.12 16 LS Contribution 399.13 15.07 6.01 6.01 Total: -1.00 -30.11 399.13 -11.33 -41.43 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: -7.84 Total: 3.38 kcal Atomic # 6 Polarization: -10.03 SS G_CDS: -2.74 Total: -12.76 kcal Atomic # 7 Polarization: -44.13 SS G_CDS: -1.41 Total: -45.54 kcal Atomic # 8 Polarization: -8.06 SS G_CDS: -0.34 Total: -8.40 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -30.11 -11.33 -41.43 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156425317.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.813 kcal (2) G-P(sol) polarization free energy of solvation -30.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.434 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds