Wall clock time and date at job start Wed Apr 1 2020 02:43:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 120.00145 * 2 1 4 4 H 1.48500 * 109.47127 * 269.99740 * 3 2 1 5 5 H 1.48496 * 109.47055 * 29.99623 * 3 2 1 6 6 H 1.48493 * 109.47331 * 149.99895 * 3 2 1 7 7 C 1.38816 * 119.99947 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99813 * 206.43870 * 7 2 1 9 9 N 1.36936 * 119.99891 * 26.71662 * 7 2 1 10 10 C 1.46499 * 119.99937 * 39.59045 * 9 7 2 11 11 C 1.50696 * 109.47364 * 90.00330 * 10 9 7 12 12 O 1.21275 * 119.99746 * 359.97438 * 11 10 9 13 13 N 1.34773 * 119.99953 * 180.02562 * 11 10 9 14 14 C 1.46501 * 119.99712 * 179.97438 * 13 11 10 15 15 H 1.08992 * 109.43693 * 325.08780 * 14 13 11 16 16 C 1.53070 * 109.43459 * 205.21302 * 14 13 11 17 17 C 1.53413 * 108.30247 * 191.78201 * 16 14 13 18 18 O 1.42831 * 108.36360 * 64.74742 * 17 16 14 19 19 C 1.35851 * 117.84675 * 310.79137 * 18 17 16 20 20 C 1.39144 * 118.49221 * 197.07698 * 19 18 17 21 21 C 1.37966 * 120.21606 * 180.22853 * 20 19 18 22 22 C 1.38292 * 119.95356 * 0.02562 * 21 20 19 23 23 C 1.38110 * 119.98685 * 359.90858 * 22 21 20 24 24 C 1.38370 * 121.80787 * 17.16444 * 19 18 17 25 25 C 1.46501 * 119.99822 * 219.59083 * 9 7 2 26 26 C 1.54261 * 110.03290 * 60.82493 * 25 9 7 27 27 C 1.54886 * 104.19529 * 217.10423 * 26 25 9 28 28 C 1.54886 * 102.74855 * 37.94605 * 27 26 25 29 29 C 1.53878 * 110.03177 * 303.65763 * 25 9 7 30 30 H 0.97002 * 119.99672 * 185.93903 * 1 2 3 31 31 H 1.09004 * 109.46985 * 210.00272 * 10 9 7 32 32 H 1.08998 * 109.47225 * 329.99858 * 10 9 7 33 33 H 0.96998 * 120.00434 * 359.97438 * 13 11 10 34 34 H 1.09001 * 109.69958 * 311.48802 * 16 14 13 35 35 H 1.09002 * 109.69940 * 72.08775 * 16 14 13 36 36 H 1.09000 * 109.68506 * 305.03542 * 17 16 14 37 37 H 1.08993 * 109.72274 * 184.48781 * 17 16 14 38 38 H 1.08000 * 119.89372 * 0.21186 * 20 19 18 39 39 H 1.07993 * 120.02588 * 180.02562 * 21 20 19 40 40 H 1.08004 * 120.00729 * 179.97438 * 22 21 20 41 41 H 1.07997 * 119.84123 * 180.02562 * 23 22 21 42 42 H 1.08999 * 110.01697 * 182.27007 * 25 9 7 43 43 H 1.09005 * 110.48975 * 335.78302 * 26 25 9 44 44 H 1.08997 * 110.48729 * 98.42669 * 26 25 9 45 45 H 1.08996 * 110.75959 * 279.62839 * 27 26 25 46 46 H 1.09011 * 110.91199 * 156.32884 * 27 26 25 47 47 H 1.09001 * 110.48713 * 203.37849 * 28 27 26 48 48 H 1.08997 * 110.60487 * 80.78887 * 28 27 26 49 49 H 1.08991 * 110.03075 * 238.57250 * 29 25 9 50 50 H 1.08996 * 110.02981 * 0.02562 * 29 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6526 0.6999 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 3.0055 -1.2509 0.4170 9 7 1.4352 -2.3250 -0.5321 10 6 0.6409 -2.2293 -1.7594 11 6 1.5371 -2.4277 -2.9546 12 8 2.7226 -2.6288 -2.7968 13 7 1.0212 -2.3807 -4.1988 14 6 1.8926 -2.5731 -5.3607 15 1 2.8713 -2.1394 -5.1558 16 6 1.2756 -1.8830 -6.5798 17 6 2.0377 -2.3413 -7.8298 18 8 1.8202 -3.7425 -8.0010 19 6 2.0048 -4.5496 -6.9239 20 6 2.1545 -5.9165 -7.1365 21 6 2.3392 -6.7693 -6.0678 22 6 2.3753 -6.2654 -4.7805 23 6 2.2284 -4.9090 -4.5658 24 6 2.0448 -4.0478 -5.6349 25 6 1.6143 -3.6219 0.1253 26 6 1.0306 -3.5760 1.5525 27 6 2.0105 -4.4333 2.3914 28 6 3.3885 -4.0687 1.7855 29 6 3.1136 -3.9352 0.2735 30 1 -0.4850 -0.8356 0.0869 31 1 -0.1317 -2.9982 -1.7529 32 1 0.1743 -1.2458 -1.8144 33 1 0.0731 -2.2196 -4.3250 34 1 0.2253 -2.1613 -6.6671 35 1 1.3621 -0.8017 -6.4728 36 1 3.1028 -2.1481 -7.7019 37 1 1.6693 -1.8032 -8.7031 38 1 2.1258 -6.3112 -8.1414 39 1 2.4555 -7.8296 -6.2364 40 1 2.5194 -6.9322 -3.9433 41 1 2.2573 -4.5179 -3.5596 42 1 1.1248 -4.4047 -0.4541 43 1 1.0076 -2.5510 1.9225 44 1 0.0315 -4.0114 1.5702 45 1 1.8012 -5.4954 2.2637 46 1 1.9661 -4.1562 3.4447 47 1 4.1102 -4.8636 1.9733 48 1 3.7486 -3.1239 2.1926 49 1 3.3514 -4.8703 -0.2333 50 1 3.7078 -3.1221 -0.1434 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000156622893.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:43:34 Heat of formation + Delta-G solvation = -32.704995 kcal Electronic energy + Delta-G solvation = -31599.236013 eV Core-core repulsion = 27591.708428 eV Total energy + Delta-G solvation = -4007.527586 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.89483 -38.93122 -37.61096 -37.41669 -35.27047 -34.23345 -31.83886 -30.94509 -30.55646 -30.09725 -27.87649 -27.76167 -26.04392 -24.97382 -23.69852 -22.65116 -22.08443 -20.15370 -19.94690 -19.89754 -19.23894 -17.78492 -17.03101 -16.71744 -16.29945 -16.17370 -15.67857 -15.25207 -14.98786 -14.79707 -14.37503 -14.11488 -13.71299 -13.67436 -13.56660 -13.29833 -13.16181 -12.98754 -12.66635 -12.56516 -12.39491 -12.01822 -11.75215 -11.42814 -11.31165 -11.09468 -10.88587 -10.70354 -10.61087 -10.57370 -10.41286 -10.33214 -10.27901 -10.09215 -9.93988 -9.86150 -9.30792 -9.10616 -8.79350 -8.61710 -8.35738 -8.15467 -6.82302 -6.05739 -3.41360 1.34271 1.48544 3.17974 3.44489 3.48013 3.50583 3.58215 3.67810 3.92343 4.49865 4.55673 4.62069 4.71798 4.93392 5.00267 5.10244 5.15762 5.29605 5.30628 5.33717 5.43737 5.47045 5.47307 5.54256 5.59947 5.68670 5.77450 5.84861 6.01424 6.10551 6.11307 6.17604 6.25285 6.29198 6.32616 6.44116 6.51390 6.55739 6.56570 6.63073 6.63637 6.72057 6.81215 6.83921 6.91363 7.00815 7.26057 7.29411 7.40639 8.01023 8.22021 8.54855 8.95789 9.11909 9.76569 10.22224 11.10986 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.011353 B = 0.003938 C = 0.003131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2465.699861 B = 7109.229298 C = 8940.402038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C -0.016 4.016 3 Si 1.059 2.941 4 H -0.294 1.294 5 H -0.290 1.290 6 H -0.291 1.291 7 C -0.329 4.329 8 H 0.052 0.948 9 N -0.560 5.560 10 C 0.121 3.879 11 C 0.486 3.514 12 O -0.522 6.522 13 N -0.738 5.738 14 C 0.189 3.811 15 H 0.096 0.904 16 C -0.166 4.166 17 C 0.067 3.933 18 O -0.319 6.319 19 C 0.132 3.868 20 C -0.159 4.159 21 C -0.088 4.088 22 C -0.157 4.157 23 C -0.064 4.064 24 C -0.168 4.168 25 C 0.177 3.823 26 C -0.131 4.131 27 C -0.122 4.122 28 C -0.118 4.118 29 C -0.127 4.127 30 H 0.269 0.731 31 H 0.058 0.942 32 H 0.103 0.897 33 H 0.396 0.604 34 H 0.082 0.918 35 H 0.091 0.909 36 H 0.066 0.934 37 H 0.110 0.890 38 H 0.126 0.874 39 H 0.125 0.875 40 H 0.121 0.879 41 H 0.138 0.862 42 H 0.043 0.957 43 H 0.084 0.916 44 H 0.044 0.956 45 H 0.053 0.947 46 H 0.053 0.947 47 H 0.047 0.953 48 H 0.061 0.939 49 H 0.040 0.960 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.617 -8.868 -11.781 14.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.219 4.219 3 Si 0.889 3.111 4 H -0.222 1.222 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.459 4.459 8 H 0.070 0.930 9 N -0.278 5.278 10 C -0.011 4.011 11 C 0.273 3.727 12 O -0.396 6.396 13 N -0.392 5.392 14 C 0.083 3.917 15 H 0.113 0.887 16 C -0.204 4.204 17 C -0.009 4.009 18 O -0.233 6.233 19 C 0.086 3.914 20 C -0.177 4.177 21 C -0.106 4.106 22 C -0.176 4.176 23 C -0.083 4.083 24 C -0.170 4.170 25 C 0.070 3.930 26 C -0.170 4.170 27 C -0.160 4.160 28 C -0.156 4.156 29 C -0.166 4.166 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.120 0.880 33 H 0.229 0.771 34 H 0.101 0.899 35 H 0.110 0.890 36 H 0.084 0.916 37 H 0.128 0.872 38 H 0.144 0.856 39 H 0.142 0.858 40 H 0.139 0.861 41 H 0.156 0.844 42 H 0.061 0.939 43 H 0.102 0.898 44 H 0.063 0.937 45 H 0.071 0.929 46 H 0.072 0.928 47 H 0.065 0.935 48 H 0.080 0.920 49 H 0.059 0.941 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 1.279 -7.376 -11.834 14.003 hybrid contribution -0.102 -1.440 0.031 1.444 sum 1.177 -8.816 -11.803 14.779 Atomic orbital electron populations 1.70786 1.06736 1.30216 1.46635 1.25867 0.96360 1.01610 0.98089 0.83605 0.74915 0.76068 0.76519 1.22180 1.21681 1.21690 1.19695 0.98398 0.88436 1.39365 0.93035 1.43603 1.60243 1.03954 1.19999 1.21018 0.92731 1.03162 0.84163 1.23281 0.90996 0.74225 0.84234 1.90589 1.16644 1.46786 1.85568 1.46504 1.11500 1.75939 1.05293 1.19509 0.96192 0.90092 0.85927 0.88653 1.22502 1.01166 1.02202 0.94530 1.22930 1.00230 0.79031 0.98724 1.85960 1.84898 1.18657 1.33835 1.18710 0.96872 0.90357 0.85428 1.20492 1.06798 0.90635 0.99820 1.20904 0.98374 0.99174 0.92193 1.21087 1.03969 0.95550 0.96962 1.21402 0.94268 0.92748 0.99840 1.20318 1.07313 0.97109 0.92282 1.21037 0.93232 0.87063 0.91686 1.22774 0.96487 1.00929 0.96798 1.22406 0.96244 0.98734 0.98579 1.22263 0.96260 1.00167 0.96873 1.22469 0.99110 1.00467 0.94548 0.92058 0.92366 0.87987 0.77084 0.89941 0.89002 0.91565 0.87191 0.85591 0.85754 0.86128 0.84438 0.93883 0.89772 0.93711 0.92867 0.92785 0.93461 0.91976 0.94079 0.90273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.94 12.31 55.49 0.68 -24.26 16 2 C -0.02 -0.43 4.78 -17.43 -0.08 -0.51 16 3 Si 1.06 24.90 29.99 -169.99 -5.10 19.80 16 4 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.33 -8.64 7.63 -15.06 -0.11 -8.76 16 8 H 0.05 1.45 7.05 -52.49 -0.37 1.08 16 9 N -0.56 -13.01 1.60 -165.75 -0.27 -13.28 16 10 C 0.12 2.54 5.34 -5.20 -0.03 2.52 16 11 C 0.49 9.65 6.46 -10.99 -0.07 9.58 16 12 O -0.52 -12.00 14.36 5.56 0.08 -11.92 16 13 N -0.74 -11.55 4.86 -54.87 -0.27 -11.81 16 14 C 0.19 2.74 2.70 -69.01 -0.19 2.55 16 15 H 0.10 1.59 7.57 -51.93 -0.39 1.20 16 16 C -0.17 -1.78 5.67 -26.48 -0.15 -1.94 16 17 C 0.07 0.65 7.03 37.37 0.26 0.92 16 18 O -0.32 -4.02 10.27 -19.27 -0.20 -4.22 16 19 C 0.13 1.83 6.47 -39.20 -0.25 1.58 16 20 C -0.16 -2.00 9.94 -39.34 -0.39 -2.39 16 21 C -0.09 -1.06 10.04 -39.66 -0.40 -1.46 16 22 C -0.16 -2.18 10.04 -39.61 -0.40 -2.57 16 23 C -0.06 -1.04 9.08 -39.53 -0.36 -1.40 16 24 C -0.17 -2.53 5.56 -104.44 -0.58 -3.11 16 25 C 0.18 3.66 3.42 -66.81 -0.23 3.43 16 26 C -0.13 -2.56 6.42 -25.08 -0.16 -2.72 16 27 C -0.12 -2.03 6.91 -24.74 -0.17 -2.20 16 28 C -0.12 -2.08 6.83 -25.08 -0.17 -2.25 16 29 C -0.13 -2.54 6.17 -25.61 -0.16 -2.70 16 30 H 0.27 7.39 7.45 -40.82 -0.30 7.09 16 31 H 0.06 1.10 7.95 -51.93 -0.41 0.69 16 32 H 0.10 2.38 5.78 -51.93 -0.30 2.08 16 33 H 0.40 5.25 8.58 -40.82 -0.35 4.90 16 34 H 0.08 0.85 8.11 -51.93 -0.42 0.43 16 35 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 39 H 0.12 1.14 8.06 -52.49 -0.42 0.71 16 40 H 0.12 1.48 8.06 -52.48 -0.42 1.06 16 41 H 0.14 2.56 4.70 -52.49 -0.25 2.31 16 42 H 0.04 0.85 7.85 -51.93 -0.41 0.44 16 43 H 0.08 1.93 7.15 -51.93 -0.37 1.56 16 44 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 46 H 0.05 0.85 8.14 -51.92 -0.42 0.42 16 47 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 48 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 49 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 50 H 0.08 1.85 6.78 -51.93 -0.35 1.50 16 LS Contribution 391.63 15.07 5.90 5.90 Total: -1.00 -30.27 391.63 -10.60 -40.87 By element: Atomic # 1 Polarization: 18.17 SS G_CDS: -7.80 Total: 10.37 kcal Atomic # 6 Polarization: -7.81 SS G_CDS: -3.64 Total: -11.45 kcal Atomic # 7 Polarization: -49.50 SS G_CDS: 0.15 Total: -49.35 kcal Atomic # 8 Polarization: -16.02 SS G_CDS: -0.12 Total: -16.14 kcal Atomic # 14 Polarization: 24.90 SS G_CDS: -5.10 Total: 19.80 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -30.27 -10.60 -40.87 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156622893.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.165 kcal (2) G-P(sol) polarization free energy of solvation -30.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds