Wall clock time and date at job start Wed Apr 1 2020 02:43:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 120.00145 * 2 1 4 4 H 1.48500 * 109.47127 * 269.99740 * 3 2 1 5 5 H 1.48496 * 109.47055 * 29.99623 * 3 2 1 6 6 H 1.48493 * 109.47331 * 149.99895 * 3 2 1 7 7 C 1.38816 * 119.99947 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99813 * 206.43870 * 7 2 1 9 9 N 1.36936 * 119.99891 * 26.71662 * 7 2 1 10 10 C 1.46499 * 119.99937 * 39.59045 * 9 7 2 11 11 C 1.50696 * 109.47364 * 90.00330 * 10 9 7 12 12 O 1.21275 * 119.99746 * 359.97438 * 11 10 9 13 13 N 1.34773 * 119.99953 * 180.02562 * 11 10 9 14 14 C 1.46501 * 119.99712 * 179.97438 * 13 11 10 15 15 H 1.08992 * 109.43693 * 325.08780 * 14 13 11 16 16 C 1.53070 * 109.43459 * 205.21302 * 14 13 11 17 17 C 1.53413 * 108.30247 * 191.78201 * 16 14 13 18 18 O 1.42831 * 108.36360 * 64.74742 * 17 16 14 19 19 C 1.35851 * 117.84675 * 310.79137 * 18 17 16 20 20 C 1.39144 * 118.49221 * 197.07698 * 19 18 17 21 21 C 1.37966 * 120.21606 * 180.22853 * 20 19 18 22 22 C 1.38292 * 119.95356 * 0.02562 * 21 20 19 23 23 C 1.38110 * 119.98685 * 359.90858 * 22 21 20 24 24 C 1.38370 * 121.80787 * 17.16444 * 19 18 17 25 25 C 1.46501 * 119.99822 * 219.59083 * 9 7 2 26 26 C 1.54261 * 110.03290 * 60.82493 * 25 9 7 27 27 C 1.54886 * 104.19529 * 217.10423 * 26 25 9 28 28 C 1.54886 * 102.74855 * 37.94605 * 27 26 25 29 29 C 1.53878 * 110.03177 * 303.65763 * 25 9 7 30 30 H 0.97002 * 119.99672 * 185.93903 * 1 2 3 31 31 H 1.09004 * 109.46985 * 210.00272 * 10 9 7 32 32 H 1.08998 * 109.47225 * 329.99858 * 10 9 7 33 33 H 0.96998 * 120.00434 * 359.97438 * 13 11 10 34 34 H 1.09001 * 109.69958 * 311.48802 * 16 14 13 35 35 H 1.09002 * 109.69940 * 72.08775 * 16 14 13 36 36 H 1.09000 * 109.68506 * 305.03542 * 17 16 14 37 37 H 1.08993 * 109.72274 * 184.48781 * 17 16 14 38 38 H 1.08000 * 119.89372 * 0.21186 * 20 19 18 39 39 H 1.07993 * 120.02588 * 180.02562 * 21 20 19 40 40 H 1.08004 * 120.00729 * 179.97438 * 22 21 20 41 41 H 1.07997 * 119.84123 * 180.02562 * 23 22 21 42 42 H 1.08999 * 110.01697 * 182.27007 * 25 9 7 43 43 H 1.09005 * 110.48975 * 335.78302 * 26 25 9 44 44 H 1.08997 * 110.48729 * 98.42669 * 26 25 9 45 45 H 1.08996 * 110.75959 * 279.62839 * 27 26 25 46 46 H 1.09011 * 110.91199 * 156.32884 * 27 26 25 47 47 H 1.09001 * 110.48713 * 203.37849 * 28 27 26 48 48 H 1.08997 * 110.60487 * 80.78887 * 28 27 26 49 49 H 1.08991 * 110.03075 * 238.57250 * 29 25 9 50 50 H 1.08996 * 110.02981 * 0.02562 * 29 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6526 0.6999 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 3.0055 -1.2509 0.4170 9 7 1.4352 -2.3250 -0.5321 10 6 0.6409 -2.2293 -1.7594 11 6 1.5371 -2.4277 -2.9546 12 8 2.7226 -2.6288 -2.7968 13 7 1.0212 -2.3807 -4.1988 14 6 1.8926 -2.5731 -5.3607 15 1 2.8713 -2.1394 -5.1558 16 6 1.2756 -1.8830 -6.5798 17 6 2.0377 -2.3413 -7.8298 18 8 1.8202 -3.7425 -8.0010 19 6 2.0048 -4.5496 -6.9239 20 6 2.1545 -5.9165 -7.1365 21 6 2.3392 -6.7693 -6.0678 22 6 2.3753 -6.2654 -4.7805 23 6 2.2284 -4.9090 -4.5658 24 6 2.0448 -4.0478 -5.6349 25 6 1.6143 -3.6219 0.1253 26 6 1.0306 -3.5760 1.5525 27 6 2.0105 -4.4333 2.3914 28 6 3.3885 -4.0687 1.7855 29 6 3.1136 -3.9352 0.2735 30 1 -0.4850 -0.8356 0.0869 31 1 -0.1317 -2.9982 -1.7529 32 1 0.1743 -1.2458 -1.8144 33 1 0.0731 -2.2196 -4.3250 34 1 0.2253 -2.1613 -6.6671 35 1 1.3621 -0.8017 -6.4728 36 1 3.1028 -2.1481 -7.7019 37 1 1.6693 -1.8032 -8.7031 38 1 2.1258 -6.3112 -8.1414 39 1 2.4555 -7.8296 -6.2364 40 1 2.5194 -6.9322 -3.9433 41 1 2.2573 -4.5179 -3.5596 42 1 1.1248 -4.4047 -0.4541 43 1 1.0076 -2.5510 1.9225 44 1 0.0315 -4.0114 1.5702 45 1 1.8012 -5.4954 2.2637 46 1 1.9661 -4.1562 3.4447 47 1 4.1102 -4.8636 1.9733 48 1 3.7486 -3.1239 2.1926 49 1 3.3514 -4.8703 -0.2333 50 1 3.7078 -3.1221 -0.1434 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000156622893.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:43:33 Heat of formation + Delta-G solvation = -49.212088 kcal Electronic energy + Delta-G solvation = -31599.951814 eV Core-core repulsion = 27591.708428 eV Total energy + Delta-G solvation = -4008.243387 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.97599 -40.44356 -39.17902 -38.42966 -36.61268 -35.99280 -33.18249 -32.74416 -31.56699 -31.15579 -29.44812 -29.32370 -27.79677 -26.20691 -24.73870 -24.26185 -23.28651 -21.49947 -21.42573 -21.11035 -21.01460 -18.82996 -18.74253 -18.11780 -17.48674 -17.42254 -17.18214 -16.67288 -16.43264 -15.94923 -15.70803 -15.53176 -15.26740 -15.18886 -14.84554 -14.60474 -14.56331 -14.17328 -14.16785 -14.10182 -13.57773 -13.48358 -12.98351 -12.90794 -12.57182 -12.42611 -12.33108 -12.24650 -12.05552 -11.95896 -11.85872 -11.80882 -11.80485 -11.67299 -11.63367 -11.41038 -11.17062 -10.74902 -10.38395 -10.10088 -9.80447 -9.18741 -8.78183 -8.09151 -5.47199 0.29013 0.41845 1.55384 1.58320 1.78661 1.85615 2.16892 2.36744 2.63057 2.81539 3.22612 3.48442 3.52059 3.62114 3.74070 3.89366 3.91777 3.98160 4.06355 4.17858 4.19667 4.26304 4.39274 4.47625 4.48084 4.54010 4.56630 4.60036 4.63751 4.68267 4.82335 4.86192 4.88566 4.90511 4.93520 4.94836 5.04858 5.14214 5.16315 5.24187 5.29161 5.43552 5.45902 5.53036 5.59145 5.63399 5.65739 5.80410 6.08789 6.41897 6.45274 6.64402 7.14630 7.46463 7.79613 8.24549 9.00857 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.011353 B = 0.003938 C = 0.003131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2465.699861 B = 7109.229298 C = 8940.402038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.055 4.055 3 Si 1.095 2.905 4 H -0.291 1.291 5 H -0.288 1.288 6 H -0.285 1.285 7 C -0.323 4.323 8 H 0.025 0.975 9 N -0.572 5.572 10 C 0.122 3.878 11 C 0.492 3.508 12 O -0.558 6.558 13 N -0.721 5.721 14 C 0.187 3.813 15 H 0.067 0.933 16 C -0.157 4.157 17 C 0.064 3.936 18 O -0.322 6.322 19 C 0.126 3.874 20 C -0.160 4.160 21 C -0.079 4.079 22 C -0.166 4.166 23 C -0.091 4.091 24 C -0.183 4.183 25 C 0.169 3.831 26 C -0.126 4.126 27 C -0.109 4.109 28 C -0.114 4.114 29 C -0.120 4.120 30 H 0.260 0.740 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.409 0.591 34 H 0.092 0.908 35 H 0.104 0.896 36 H 0.066 0.934 37 H 0.147 0.853 38 H 0.151 0.849 39 H 0.160 0.840 40 H 0.131 0.869 41 H 0.106 0.894 42 H 0.053 0.947 43 H 0.044 0.956 44 H 0.057 0.943 45 H 0.081 0.919 46 H 0.068 0.932 47 H 0.076 0.924 48 H 0.042 0.958 49 H 0.052 0.948 50 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.256 -10.618 -13.602 17.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.254 4.254 3 Si 0.923 3.077 4 H -0.218 1.218 5 H -0.214 1.214 6 H -0.211 1.211 7 C -0.453 4.453 8 H 0.042 0.958 9 N -0.291 5.291 10 C -0.008 4.008 11 C 0.278 3.722 12 O -0.436 6.436 13 N -0.375 5.375 14 C 0.082 3.918 15 H 0.085 0.915 16 C -0.195 4.195 17 C -0.011 4.011 18 O -0.236 6.236 19 C 0.081 3.919 20 C -0.178 4.178 21 C -0.096 4.096 22 C -0.184 4.184 23 C -0.109 4.109 24 C -0.185 4.185 25 C 0.063 3.937 26 C -0.165 4.165 27 C -0.147 4.147 28 C -0.151 4.151 29 C -0.159 4.159 30 H 0.070 0.930 31 H 0.096 0.904 32 H 0.100 0.900 33 H 0.244 0.756 34 H 0.111 0.889 35 H 0.123 0.877 36 H 0.085 0.915 37 H 0.164 0.836 38 H 0.169 0.831 39 H 0.178 0.822 40 H 0.149 0.851 41 H 0.124 0.876 42 H 0.071 0.929 43 H 0.063 0.937 44 H 0.076 0.924 45 H 0.099 0.901 46 H 0.086 0.914 47 H 0.094 0.906 48 H 0.061 0.939 49 H 0.071 0.929 50 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 0.891 -9.135 -13.692 16.484 hybrid contribution 0.032 -0.989 0.501 1.110 sum 0.923 -10.125 -13.191 16.654 Atomic orbital electron populations 1.70864 1.07031 1.29615 1.48673 1.26726 0.96582 1.03760 0.98326 0.83086 0.74304 0.73713 0.76623 1.21809 1.21379 1.21120 1.19565 0.97091 0.89794 1.38879 0.95754 1.43680 1.60252 1.04064 1.21117 1.20951 0.92975 1.02649 0.84261 1.22778 0.90069 0.74131 0.85256 1.90576 1.17973 1.48737 1.86274 1.46200 1.12353 1.74309 1.04645 1.19595 0.94893 0.90751 0.86563 0.91546 1.22488 1.01476 1.02537 0.93023 1.23201 1.00413 0.77974 0.99512 1.85964 1.84718 1.19759 1.33184 1.18873 0.96626 0.91312 0.85118 1.20892 1.05557 0.90131 1.01217 1.21274 0.96468 1.00903 0.91002 1.21280 1.03934 0.94730 0.98500 1.21285 0.96659 0.94239 0.98756 1.20296 1.08515 0.96853 0.92886 1.21224 0.93881 0.86203 0.92399 1.22659 0.98103 0.99382 0.96401 1.22370 0.94067 0.99643 0.98635 1.22231 0.97788 1.00323 0.94797 1.22346 0.97940 0.99288 0.96357 0.93012 0.90369 0.90039 0.75555 0.88943 0.87720 0.91527 0.83553 0.83105 0.82244 0.85134 0.87577 0.92890 0.93735 0.92427 0.90087 0.91369 0.90564 0.93886 0.92910 0.94469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.27 12.31 21.65 0.27 -52.00 16 2 C -0.05 -3.02 4.78 84.86 0.41 -2.61 16 3 Si 1.10 51.74 29.99 68.60 2.06 53.79 16 4 H -0.29 -13.47 7.11 99.48 0.71 -12.77 16 5 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 6 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 7 C -0.32 -17.76 7.63 84.03 0.64 -17.12 16 8 H 0.02 1.47 7.05 -2.91 -0.02 1.45 16 9 N -0.57 -27.74 1.60 -678.33 -1.09 -28.83 16 10 C 0.12 5.36 5.34 85.63 0.46 5.82 16 11 C 0.49 20.34 6.46 87.66 0.57 20.91 16 12 O -0.56 -27.17 14.36 -3.01 -0.04 -27.21 16 13 N -0.72 -23.08 4.86 -445.89 -2.17 -25.25 16 14 C 0.19 5.49 2.70 44.29 0.12 5.61 16 15 H 0.07 2.33 7.57 -2.39 -0.02 2.31 16 16 C -0.16 -3.14 5.67 30.76 0.17 -2.96 16 17 C 0.06 1.10 7.03 72.12 0.51 1.61 16 18 O -0.32 -7.31 10.27 -91.87 -0.94 -8.26 16 19 C 0.13 3.31 6.47 22.52 0.15 3.45 16 20 C -0.16 -3.58 9.94 22.42 0.22 -3.36 16 21 C -0.08 -1.69 10.04 22.22 0.22 -1.47 16 22 C -0.17 -4.46 10.04 22.25 0.22 -4.23 16 23 C -0.09 -2.99 9.08 22.30 0.20 -2.78 16 24 C -0.18 -5.51 5.56 -19.75 -0.11 -5.62 16 25 C 0.17 7.16 3.42 45.71 0.16 7.31 16 26 C -0.13 -4.96 6.42 31.67 0.20 -4.76 16 27 C -0.11 -3.47 6.91 31.88 0.22 -3.25 16 28 C -0.11 -3.96 6.83 31.67 0.22 -3.74 16 29 C -0.12 -4.93 6.17 31.32 0.19 -4.73 16 30 H 0.26 14.80 7.45 -92.71 -0.69 14.11 16 31 H 0.08 3.02 7.95 -2.38 -0.02 3.01 16 32 H 0.08 3.95 5.78 -2.39 -0.01 3.93 16 33 H 0.41 10.84 8.58 -92.71 -0.80 10.05 16 34 H 0.09 1.69 8.11 -2.39 -0.02 1.67 16 35 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.15 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.15 2.61 8.06 -2.91 -0.02 2.59 16 39 H 0.16 2.26 8.06 -2.91 -0.02 2.24 16 40 H 0.13 3.10 8.06 -2.91 -0.02 3.08 16 41 H 0.11 4.16 4.70 -2.91 -0.01 4.15 16 42 H 0.05 2.11 7.85 -2.39 -0.02 2.09 16 43 H 0.04 2.11 7.15 -2.38 -0.02 2.09 16 44 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 45 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 46 H 0.07 2.00 8.14 -2.38 -0.02 1.98 16 47 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 48 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 49 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 50 H 0.04 1.82 6.78 -2.39 -0.02 1.81 16 Total: -1.00 -69.61 391.63 3.09 -66.52 By element: Atomic # 1 Polarization: 32.93 SS G_CDS: 0.23 Total: 33.16 kcal Atomic # 6 Polarization: -16.69 SS G_CDS: 4.77 Total: -11.92 kcal Atomic # 7 Polarization: -103.10 SS G_CDS: -2.99 Total: -106.08 kcal Atomic # 8 Polarization: -34.48 SS G_CDS: -0.99 Total: -35.47 kcal Atomic # 14 Polarization: 51.74 SS G_CDS: 2.06 Total: 53.79 kcal Total: -69.61 3.09 -66.52 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156622893.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.308 kcal (2) G-P(sol) polarization free energy of solvation -69.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds