Wall clock time and date at job start Wed Apr 1 2020 03:28:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00041 * 2 1 4 4 H 1.48499 * 109.46994 * 269.99960 * 3 2 1 5 5 H 1.48502 * 109.47282 * 29.99851 * 3 2 1 6 6 H 1.48503 * 109.47143 * 150.00135 * 3 2 1 7 7 C 1.37882 * 119.99939 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99862 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00108 * 179.97438 * 7 2 1 10 10 C 1.52995 * 109.47196 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.46951 * 179.97438 * 10 9 7 12 12 N 1.46495 * 109.47007 * 179.97438 * 11 10 9 13 13 C 1.34782 * 120.00335 * 180.02562 * 12 11 10 14 14 O 1.21725 * 119.99539 * 0.02562 * 13 12 11 15 15 C 1.46198 * 120.00339 * 180.02562 * 13 12 11 16 16 C 1.35040 * 119.99988 * 179.97438 * 15 13 12 17 17 C 1.46924 * 120.00105 * 180.02562 * 16 15 13 18 18 C 1.40029 * 120.09322 * 180.02562 * 17 16 15 19 19 C 1.37099 * 119.90333 * 179.97438 * 18 17 16 20 20 C 1.39245 * 120.09355 * 359.97438 * 19 18 17 21 21 N 1.39116 * 119.90609 * 179.97438 * 20 19 18 22 22 C 1.47014 * 111.00116 * 180.02562 * 21 20 19 23 23 C 1.53096 * 109.25675 * 182.39064 * 22 21 20 24 24 O 1.43015 * 109.25724 * 303.14825 * 23 22 21 25 25 C 1.43010 * 113.73980 * 58.67537 * 24 23 22 26 26 C 1.47017 * 110.99633 * 303.63437 * 21 20 19 27 27 C 1.39241 * 120.19016 * 0.25643 * 20 19 18 28 28 C 1.37100 * 120.09458 * 359.48922 * 27 20 19 29 29 H 0.97001 * 120.00373 * 359.97438 * 1 2 3 30 30 H 1.09004 * 109.46620 * 60.00052 * 9 7 2 31 31 H 1.09003 * 109.47081 * 300.00328 * 9 7 2 32 32 H 1.09008 * 109.46805 * 60.00472 * 10 9 7 33 33 H 1.09003 * 109.47368 * 300.00146 * 10 9 7 34 34 H 1.09008 * 109.46777 * 60.00704 * 11 10 9 35 35 H 1.08990 * 109.47605 * 300.00506 * 11 10 9 36 36 H 0.97006 * 120.00192 * 0.02562 * 12 11 10 37 37 H 1.08000 * 120.00000 * 0.02562 * 15 13 12 38 38 H 1.08000 * 120.00012 * 0.02562 * 16 15 13 39 39 H 1.07996 * 120.04731 * 359.95062 * 18 17 16 40 40 H 1.07994 * 119.95447 * 179.97438 * 19 18 17 41 41 H 1.09004 * 109.50706 * 62.45381 * 22 21 20 42 42 H 1.09000 * 109.50503 * 302.32169 * 22 21 20 43 43 H 1.08997 * 109.50375 * 183.21864 * 23 22 21 44 44 H 1.08996 * 109.54637 * 63.10402 * 23 22 21 45 45 H 1.08993 * 109.51045 * 61.26026 * 25 24 23 46 46 H 1.08999 * 109.51323 * 181.39624 * 25 24 23 47 47 H 1.09006 * 109.50736 * 297.54374 * 26 21 20 48 48 H 1.08997 * 109.50641 * 57.67438 * 26 21 20 49 49 H 1.07997 * 119.95603 * 179.72017 * 27 20 19 50 50 H 1.07997 * 120.04920 * 180.25417 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6366 0.0001 11 6 5.5515 -2.6366 -0.0012 12 7 6.0398 -4.0178 -0.0004 13 6 7.3649 -4.2641 -0.0008 14 8 8.1559 -3.3389 -0.0012 15 6 7.8522 -5.6425 -0.0006 16 6 9.1799 -5.8893 -0.0015 17 6 9.6697 -7.2745 -0.0019 18 6 11.0460 -7.5326 -0.0022 19 6 11.4987 -8.8266 -0.0021 20 6 10.5921 -9.8835 -0.0010 21 7 11.0557 -11.1951 -0.0014 22 6 9.9374 -12.1493 -0.0007 23 6 10.4906 -13.5756 0.0591 24 8 11.3790 -13.7835 -1.0422 25 6 12.4803 -12.8718 -1.0735 26 6 11.9469 -11.4385 -1.1451 27 6 9.2227 -9.6313 -0.0055 28 6 8.7614 -8.3403 -0.0004 29 1 -0.4851 0.8400 0.0004 30 1 3.8751 -0.6797 0.8895 31 1 3.8745 -0.6809 -0.8905 32 1 3.6578 -3.1506 -0.8898 33 1 3.6585 -3.1503 0.8903 34 1 5.9155 -2.1225 0.8885 35 1 5.9141 -2.1231 -0.8915 36 1 5.4094 -4.7551 0.0003 37 1 7.1504 -6.4634 -0.0006 38 1 9.8817 -5.0684 -0.0019 39 1 11.7497 -6.7134 -0.0030 40 1 12.5599 -9.0266 -0.0028 41 1 9.3515 -12.0240 -0.9113 42 1 9.3045 -11.9677 0.8679 43 1 9.6675 -14.2879 0.0022 44 1 11.0312 -13.7181 0.9947 45 1 13.0790 -12.9930 -0.1708 46 1 13.0963 -13.0749 -1.9495 47 1 11.3927 -11.3019 -2.0738 48 1 12.7812 -10.7378 -1.1120 49 1 8.5229 -10.4539 -0.0092 50 1 7.6991 -8.1456 0.0003 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171000018.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:28:00 Heat of formation + Delta-G solvation = -37.546299 kcal Electronic energy + Delta-G solvation = -27662.406187 eV Core-core repulsion = 23654.668667 eV Total energy + Delta-G solvation = -4007.737520 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.11384 -39.62911 -39.05051 -36.58154 -35.53753 -33.56380 -33.28441 -32.41793 -31.47191 -31.18496 -29.84437 -27.70153 -26.75144 -25.23769 -24.03637 -22.75317 -22.60100 -21.48547 -20.77577 -20.42511 -19.26711 -18.37904 -17.39494 -16.81754 -16.76765 -16.25917 -15.98503 -15.81446 -15.65647 -15.36606 -15.33427 -15.18290 -14.51906 -14.37154 -14.18515 -13.99078 -13.95757 -13.50715 -13.27565 -12.88847 -12.71981 -12.59046 -12.30018 -12.07475 -12.02943 -11.97487 -11.90819 -11.36688 -11.24571 -11.07983 -10.95803 -10.88434 -10.30524 -10.22460 -9.98081 -9.78934 -9.60779 -9.59656 -9.46919 -9.23067 -8.85126 -8.55763 -8.04183 -6.06642 -4.05365 0.22363 0.99135 1.69280 2.92544 3.20879 3.27410 3.31204 3.38079 3.39682 3.43275 3.57488 4.12399 4.16311 4.28660 4.42541 4.44317 4.46422 4.47975 4.50754 4.59897 4.80554 4.87061 4.92127 4.93073 4.98326 5.03554 5.08001 5.13811 5.25502 5.27566 5.32301 5.54941 5.55922 5.60651 5.66206 5.78305 5.83865 6.01862 6.14370 6.17700 6.32055 6.33327 6.37703 6.44764 6.46568 6.69864 6.71247 6.79516 7.22645 7.36157 7.66139 7.76734 8.34668 8.50099 8.97124 9.55692 11.06599 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.028280 B = 0.001320 C = 0.001270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.866234 B =21207.944214 C =22035.711030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.067 3.933 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.264 1.264 7 C -0.523 4.523 8 H 0.072 0.928 9 C -0.011 4.011 10 C -0.114 4.114 11 C 0.114 3.886 12 N -0.720 5.720 13 C 0.540 3.460 14 O -0.552 6.552 15 C -0.208 4.208 16 C -0.025 4.025 17 C -0.096 4.096 18 C -0.069 4.069 19 C -0.142 4.142 20 C 0.117 3.883 21 N -0.488 5.488 22 C 0.011 3.989 23 C 0.062 3.938 24 O -0.384 6.384 25 C 0.062 3.938 26 C 0.019 3.981 27 C -0.172 4.172 28 C -0.073 4.073 29 H 0.263 0.737 30 H 0.019 0.981 31 H 0.014 0.986 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.400 0.600 37 H 0.127 0.873 38 H 0.135 0.865 39 H 0.131 0.869 40 H 0.127 0.873 41 H 0.059 0.941 42 H 0.096 0.904 43 H 0.104 0.896 44 H 0.062 0.938 45 H 0.062 0.938 46 H 0.104 0.896 47 H 0.056 0.944 48 H 0.095 0.905 49 H 0.130 0.870 50 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.047 -29.442 -0.756 39.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.134 4.134 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.561 4.561 8 H 0.090 0.910 9 C -0.049 4.049 10 C -0.152 4.152 11 C -0.009 4.009 12 N -0.370 5.370 13 C 0.329 3.671 14 O -0.432 6.432 15 C -0.229 4.229 16 C -0.044 4.044 17 C -0.097 4.097 18 C -0.088 4.088 19 C -0.162 4.162 20 C 0.019 3.981 21 N -0.204 5.204 22 C -0.116 4.116 23 C -0.015 4.015 24 O -0.302 6.302 25 C -0.015 4.015 26 C -0.106 4.106 27 C -0.192 4.192 28 C -0.091 4.091 29 H 0.073 0.927 30 H 0.037 0.963 31 H 0.033 0.967 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.234 0.766 37 H 0.145 0.855 38 H 0.153 0.847 39 H 0.149 0.851 40 H 0.145 0.855 41 H 0.077 0.923 42 H 0.114 0.886 43 H 0.122 0.878 44 H 0.080 0.920 45 H 0.081 0.919 46 H 0.122 0.878 47 H 0.074 0.926 48 H 0.113 0.887 49 H 0.148 0.852 50 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 27.701 -28.951 -0.478 40.072 hybrid contribution -0.514 0.932 -0.342 1.118 sum 27.187 -28.020 -0.820 39.050 Atomic orbital electron populations 1.69911 1.06321 1.26959 1.51012 1.25023 0.94736 0.99222 0.94438 0.86779 0.80417 0.83529 0.78596 1.20244 1.21346 1.18895 1.21102 0.89324 0.94517 1.51116 0.91015 1.19505 0.97263 0.91493 0.96672 1.21710 0.90645 1.01056 1.01741 1.21659 0.96123 0.81173 1.01971 1.46067 1.06618 1.10051 1.74274 1.18282 0.82639 0.89309 0.76910 1.90808 1.55440 1.46309 1.50664 1.22978 0.96785 0.96011 1.07104 1.22302 0.95887 0.94630 0.91615 1.19013 0.93394 0.92693 1.04564 1.21131 0.94565 0.96601 0.96506 1.20576 0.99229 0.91455 1.04909 1.19042 0.92753 0.88874 0.97387 1.59115 1.18708 1.01719 1.40829 1.23029 0.92888 0.92700 1.02995 1.22729 0.93804 0.94827 0.90151 1.88024 1.37992 1.55754 1.48417 1.22729 0.88835 0.86932 1.03042 1.22983 0.97365 0.99051 0.91226 1.21124 0.94338 0.97662 1.06105 1.21190 0.99762 0.91691 0.96474 0.92698 0.96290 0.96738 0.92111 0.92072 0.91732 0.91736 0.76571 0.85485 0.84692 0.85095 0.85474 0.92327 0.88599 0.87808 0.91953 0.91924 0.87835 0.92615 0.88717 0.85248 0.85201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.78 13.96 55.43 0.77 -27.01 16 2 C 0.07 1.95 5.47 -17.82 -0.10 1.86 16 3 Si 0.88 21.81 27.47 -169.99 -4.67 17.14 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.26 -6.33 6.54 56.52 0.37 -5.96 16 7 C -0.52 -14.77 9.66 -34.44 -0.33 -15.10 16 8 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 9 C -0.01 -0.27 4.04 -27.89 -0.11 -0.38 16 10 C -0.11 -2.13 5.27 -26.73 -0.14 -2.27 16 11 C 0.11 1.91 5.67 -4.04 -0.02 1.89 16 12 N -0.72 -10.03 5.55 -61.77 -0.34 -10.38 16 13 C 0.54 7.89 7.73 -13.06 -0.10 7.79 16 14 O -0.55 -10.20 16.23 5.17 0.08 -10.11 16 15 C -0.21 -2.23 9.40 -37.52 -0.35 -2.58 16 16 C -0.02 -0.25 9.45 -37.20 -0.35 -0.60 16 17 C -0.10 -0.84 5.87 -105.04 -0.62 -1.46 16 18 C -0.07 -0.53 9.76 -39.32 -0.38 -0.91 16 19 C -0.14 -1.01 9.15 -39.62 -0.36 -1.37 16 20 C 0.12 0.87 5.64 -83.81 -0.47 0.39 16 21 N -0.49 -3.11 4.76 -170.76 -0.81 -3.92 16 22 C 0.01 0.06 4.32 -3.71 -0.02 0.04 16 23 C 0.06 0.30 7.01 37.21 0.26 0.56 16 24 O -0.38 -2.56 10.83 -35.23 -0.38 -2.95 16 25 C 0.06 0.29 7.01 37.21 0.26 0.55 16 26 C 0.02 0.10 5.40 -3.71 -0.02 0.08 16 27 C -0.17 -1.25 8.76 -39.62 -0.35 -1.59 16 28 C -0.07 -0.57 9.38 -39.32 -0.37 -0.94 16 29 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 30 H 0.02 0.45 7.20 -51.93 -0.37 0.07 16 31 H 0.01 0.34 7.57 -51.93 -0.39 -0.06 16 32 H 0.06 1.11 8.14 -51.92 -0.42 0.68 16 33 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.06 1.14 8.14 -51.92 -0.42 0.72 16 35 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.40 4.40 8.45 -40.82 -0.34 4.06 16 37 H 0.13 1.00 6.06 -52.49 -0.32 0.69 16 38 H 0.14 1.45 7.52 -52.49 -0.39 1.05 16 39 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 40 H 0.13 0.69 7.18 -52.49 -0.38 0.32 16 41 H 0.06 0.32 7.51 -51.93 -0.39 -0.07 16 42 H 0.10 0.42 7.22 -51.93 -0.38 0.05 16 43 H 0.10 0.33 8.14 -51.93 -0.42 -0.10 16 44 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 45 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 46 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 47 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 48 H 0.09 0.38 6.83 -51.93 -0.35 0.02 16 49 H 0.13 0.73 5.78 -52.49 -0.30 0.42 16 50 H 0.13 0.83 6.16 -52.49 -0.32 0.51 16 LS Contribution 403.65 15.07 6.08 6.08 Total: -1.00 -34.95 403.65 -10.61 -45.56 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: -7.76 Total: -0.35 kcal Atomic # 6 Polarization: -10.48 SS G_CDS: -3.58 Total: -14.06 kcal Atomic # 7 Polarization: -40.93 SS G_CDS: -0.38 Total: -41.31 kcal Atomic # 8 Polarization: -12.76 SS G_CDS: -0.30 Total: -13.06 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.67 Total: 17.14 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -34.95 -10.61 -45.56 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171000018.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.009 kcal (2) G-P(sol) polarization free energy of solvation -34.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds