Wall clock time and date at job start Wed Apr 1 2020 03:27:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00041 * 2 1 4 4 H 1.48499 * 109.46994 * 269.99960 * 3 2 1 5 5 H 1.48502 * 109.47282 * 29.99851 * 3 2 1 6 6 H 1.48503 * 109.47143 * 150.00135 * 3 2 1 7 7 C 1.37882 * 119.99939 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99862 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00108 * 179.97438 * 7 2 1 10 10 C 1.52995 * 109.47196 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.46951 * 179.97438 * 10 9 7 12 12 N 1.46495 * 109.47007 * 179.97438 * 11 10 9 13 13 C 1.34782 * 120.00335 * 180.02562 * 12 11 10 14 14 O 1.21725 * 119.99539 * 0.02562 * 13 12 11 15 15 C 1.46198 * 120.00339 * 180.02562 * 13 12 11 16 16 C 1.35040 * 119.99988 * 179.97438 * 15 13 12 17 17 C 1.46924 * 120.00105 * 180.02562 * 16 15 13 18 18 C 1.40029 * 120.09322 * 180.02562 * 17 16 15 19 19 C 1.37099 * 119.90333 * 179.97438 * 18 17 16 20 20 C 1.39245 * 120.09355 * 359.97438 * 19 18 17 21 21 N 1.39116 * 119.90609 * 179.97438 * 20 19 18 22 22 C 1.47014 * 111.00116 * 180.02562 * 21 20 19 23 23 C 1.53096 * 109.25675 * 182.39064 * 22 21 20 24 24 O 1.43015 * 109.25724 * 303.14825 * 23 22 21 25 25 C 1.43010 * 113.73980 * 58.67537 * 24 23 22 26 26 C 1.47017 * 110.99633 * 303.63437 * 21 20 19 27 27 C 1.39241 * 120.19016 * 0.25643 * 20 19 18 28 28 C 1.37100 * 120.09458 * 359.48922 * 27 20 19 29 29 H 0.97001 * 120.00373 * 359.97438 * 1 2 3 30 30 H 1.09004 * 109.46620 * 60.00052 * 9 7 2 31 31 H 1.09003 * 109.47081 * 300.00328 * 9 7 2 32 32 H 1.09008 * 109.46805 * 60.00472 * 10 9 7 33 33 H 1.09003 * 109.47368 * 300.00146 * 10 9 7 34 34 H 1.09008 * 109.46777 * 60.00704 * 11 10 9 35 35 H 1.08990 * 109.47605 * 300.00506 * 11 10 9 36 36 H 0.97006 * 120.00192 * 0.02562 * 12 11 10 37 37 H 1.08000 * 120.00000 * 0.02562 * 15 13 12 38 38 H 1.08000 * 120.00012 * 0.02562 * 16 15 13 39 39 H 1.07996 * 120.04731 * 359.95062 * 18 17 16 40 40 H 1.07994 * 119.95447 * 179.97438 * 19 18 17 41 41 H 1.09004 * 109.50706 * 62.45381 * 22 21 20 42 42 H 1.09000 * 109.50503 * 302.32169 * 22 21 20 43 43 H 1.08997 * 109.50375 * 183.21864 * 23 22 21 44 44 H 1.08996 * 109.54637 * 63.10402 * 23 22 21 45 45 H 1.08993 * 109.51045 * 61.26026 * 25 24 23 46 46 H 1.08999 * 109.51323 * 181.39624 * 25 24 23 47 47 H 1.09006 * 109.50736 * 297.54374 * 26 21 20 48 48 H 1.08997 * 109.50641 * 57.67438 * 26 21 20 49 49 H 1.07997 * 119.95603 * 179.72017 * 27 20 19 50 50 H 1.07997 * 120.04920 * 180.25417 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6366 0.0001 11 6 5.5515 -2.6366 -0.0012 12 7 6.0398 -4.0178 -0.0004 13 6 7.3649 -4.2641 -0.0008 14 8 8.1559 -3.3389 -0.0012 15 6 7.8522 -5.6425 -0.0006 16 6 9.1799 -5.8893 -0.0015 17 6 9.6697 -7.2745 -0.0019 18 6 11.0460 -7.5326 -0.0022 19 6 11.4987 -8.8266 -0.0021 20 6 10.5921 -9.8835 -0.0010 21 7 11.0557 -11.1951 -0.0014 22 6 9.9374 -12.1493 -0.0007 23 6 10.4906 -13.5756 0.0591 24 8 11.3790 -13.7835 -1.0422 25 6 12.4803 -12.8718 -1.0735 26 6 11.9469 -11.4385 -1.1451 27 6 9.2227 -9.6313 -0.0055 28 6 8.7614 -8.3403 -0.0004 29 1 -0.4851 0.8400 0.0004 30 1 3.8751 -0.6797 0.8895 31 1 3.8745 -0.6809 -0.8905 32 1 3.6578 -3.1506 -0.8898 33 1 3.6585 -3.1503 0.8903 34 1 5.9155 -2.1225 0.8885 35 1 5.9141 -2.1231 -0.8915 36 1 5.4094 -4.7551 0.0003 37 1 7.1504 -6.4634 -0.0006 38 1 9.8817 -5.0684 -0.0019 39 1 11.7497 -6.7134 -0.0030 40 1 12.5599 -9.0266 -0.0028 41 1 9.3515 -12.0240 -0.9113 42 1 9.3045 -11.9677 0.8679 43 1 9.6675 -14.2879 0.0022 44 1 11.0312 -13.7181 0.9947 45 1 13.0790 -12.9930 -0.1708 46 1 13.0963 -13.0749 -1.9495 47 1 11.3927 -11.3019 -2.0738 48 1 12.7812 -10.7378 -1.1120 49 1 8.5229 -10.4539 -0.0092 50 1 7.6991 -8.1456 0.0003 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171000018.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:27:59 Heat of formation + Delta-G solvation = -60.873450 kcal Electronic energy + Delta-G solvation = -27663.417728 eV Core-core repulsion = 23654.668667 eV Total energy + Delta-G solvation = -4008.749061 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.58672 -40.71443 -39.61751 -37.21962 -36.88661 -35.13995 -34.30511 -33.25909 -32.84758 -31.65565 -30.55002 -29.07572 -27.60379 -25.65406 -25.23963 -23.83787 -23.15963 -22.32835 -22.16862 -21.23758 -20.26276 -18.95527 -18.88932 -18.21125 -17.26967 -17.06527 -16.68804 -16.53684 -16.42535 -16.38515 -16.17103 -15.86439 -15.69880 -15.37707 -15.06371 -15.01939 -14.78470 -14.61597 -14.39382 -13.87367 -13.81009 -13.63564 -13.31871 -13.19883 -12.80040 -12.74499 -12.70650 -12.57899 -12.40470 -11.94003 -11.88961 -11.78544 -11.64510 -11.60343 -11.51897 -11.33749 -10.98587 -10.78488 -10.76444 -10.25102 -10.04301 -9.99249 -8.63926 -8.29733 -6.33639 -0.47798 0.45182 0.94197 1.36594 1.38295 1.50122 2.26217 2.27798 2.36160 2.52549 2.87733 2.93343 3.06129 3.66565 3.68685 3.78229 3.89073 3.94330 4.01144 4.08147 4.12167 4.19750 4.22379 4.24276 4.27245 4.36130 4.46100 4.49197 4.49823 4.61227 4.65481 4.73476 4.86437 4.88081 4.90139 4.92608 5.00667 5.03199 5.06242 5.16307 5.23552 5.38843 5.43189 5.51855 5.55221 5.64921 5.65263 5.67940 5.84708 6.10747 6.18151 6.27085 6.60473 6.74425 7.25340 7.31352 8.86664 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.028280 B = 0.001320 C = 0.001270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.866234 B =21207.944214 C =22035.711030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.006 3.994 3 Si 0.947 3.053 4 H -0.267 1.267 5 H -0.284 1.284 6 H -0.249 1.249 7 C -0.532 4.532 8 H 0.038 0.962 9 C -0.013 4.013 10 C -0.100 4.100 11 C 0.126 3.874 12 N -0.712 5.712 13 C 0.538 3.462 14 O -0.598 6.598 15 C -0.221 4.221 16 C -0.008 4.008 17 C -0.117 4.117 18 C -0.071 4.071 19 C -0.148 4.148 20 C 0.116 3.884 21 N -0.495 5.495 22 C 0.010 3.990 23 C 0.061 3.939 24 O -0.405 6.405 25 C 0.060 3.940 26 C 0.020 3.980 27 C -0.180 4.180 28 C -0.073 4.073 29 H 0.266 0.734 30 H 0.020 0.980 31 H 0.019 0.981 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.056 0.944 35 H 0.057 0.943 36 H 0.416 0.584 37 H 0.158 0.842 38 H 0.124 0.876 39 H 0.143 0.857 40 H 0.142 0.858 41 H 0.056 0.944 42 H 0.104 0.896 43 H 0.118 0.882 44 H 0.064 0.936 45 H 0.066 0.934 46 H 0.119 0.881 47 H 0.047 0.953 48 H 0.106 0.894 49 H 0.145 0.855 50 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.954 -30.672 -0.736 42.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.191 4.191 3 Si 0.770 3.230 4 H -0.192 1.192 5 H -0.209 1.209 6 H -0.172 1.172 7 C -0.570 4.570 8 H 0.056 0.944 9 C -0.051 4.051 10 C -0.138 4.138 11 C 0.002 3.998 12 N -0.363 5.363 13 C 0.329 3.671 14 O -0.482 6.482 15 C -0.241 4.241 16 C -0.028 4.028 17 C -0.118 4.118 18 C -0.090 4.090 19 C -0.169 4.169 20 C 0.018 3.982 21 N -0.210 5.210 22 C -0.116 4.116 23 C -0.016 4.016 24 O -0.323 6.323 25 C -0.016 4.016 26 C -0.105 4.105 27 C -0.201 4.201 28 C -0.092 4.092 29 H 0.075 0.925 30 H 0.039 0.961 31 H 0.038 0.962 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.253 0.747 37 H 0.175 0.825 38 H 0.142 0.858 39 H 0.161 0.839 40 H 0.160 0.840 41 H 0.074 0.926 42 H 0.122 0.878 43 H 0.136 0.864 44 H 0.082 0.918 45 H 0.084 0.916 46 H 0.137 0.863 47 H 0.066 0.934 48 H 0.124 0.876 49 H 0.162 0.838 50 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 29.605 -30.231 -0.459 42.315 hybrid contribution -1.061 1.133 -0.343 1.589 sum 28.544 -29.098 -0.801 40.769 Atomic orbital electron populations 1.70054 1.08203 1.28133 1.52665 1.25963 0.95565 1.03365 0.94164 0.85710 0.79511 0.78577 0.79188 1.19246 1.20939 1.17231 1.21470 0.91885 0.93304 1.50329 0.94375 1.19472 0.94109 0.94696 0.96786 1.21485 0.91943 0.98154 1.02235 1.21302 0.94429 0.82784 1.01295 1.45889 1.07025 1.09374 1.74004 1.18852 0.82172 0.90427 0.75668 1.90782 1.56433 1.47996 1.52948 1.22882 0.97508 0.94451 1.09271 1.22357 0.95591 0.95244 0.89620 1.19011 0.94132 0.92034 1.06595 1.21336 0.94488 0.97354 0.95777 1.20770 1.00101 0.91174 1.04808 1.19272 0.93031 0.89455 0.96437 1.59136 1.19207 1.01462 1.41176 1.23079 0.92690 0.92670 1.03204 1.22841 0.94075 0.94934 0.89761 1.87996 1.38705 1.56468 1.49179 1.22852 0.88523 0.86277 1.03972 1.23025 0.97397 0.99727 0.90366 1.21335 0.94707 0.97964 1.06085 1.21390 1.00410 0.91646 0.95705 0.92499 0.96124 0.96239 0.91630 0.91638 0.92541 0.92455 0.74721 0.82498 0.85807 0.83946 0.83980 0.92588 0.87806 0.86362 0.91804 0.91575 0.86348 0.93446 0.87573 0.83779 0.83838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.47 13.96 21.45 0.30 -59.17 16 2 C 0.01 0.37 5.47 84.66 0.46 0.84 16 3 Si 0.95 44.60 27.47 68.60 1.88 46.49 16 4 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 5 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 6 H -0.25 -11.00 6.54 99.48 0.65 -10.35 16 7 C -0.53 -30.35 9.66 25.60 0.25 -30.10 16 8 H 0.04 2.36 7.99 -2.91 -0.02 2.33 16 9 C -0.01 -0.58 4.04 29.85 0.12 -0.46 16 10 C -0.10 -3.65 5.27 30.59 0.16 -3.49 16 11 C 0.13 4.10 5.67 86.38 0.49 4.59 16 12 N -0.71 -18.90 5.55 -467.56 -2.60 -21.50 16 13 C 0.54 15.27 7.73 86.31 0.67 15.94 16 14 O -0.60 -22.11 16.23 -4.43 -0.07 -22.18 16 15 C -0.22 -4.41 9.40 23.60 0.22 -4.19 16 16 C -0.01 -0.16 9.45 23.81 0.23 0.07 16 17 C -0.12 -1.87 5.87 -20.13 -0.12 -1.99 16 18 C -0.07 -0.98 9.76 22.44 0.22 -0.76 16 19 C -0.15 -1.84 9.15 22.24 0.20 -1.64 16 20 C 0.12 1.51 5.64 38.47 0.22 1.72 16 21 N -0.49 -5.42 4.76 -694.18 -3.30 -8.73 16 22 C 0.01 0.09 4.32 86.31 0.37 0.46 16 23 C 0.06 0.48 7.01 72.01 0.50 0.99 16 24 O -0.40 -4.86 10.83 -148.98 -1.61 -6.47 16 25 C 0.06 0.47 7.01 72.02 0.50 0.97 16 26 C 0.02 0.17 5.40 86.32 0.47 0.64 16 27 C -0.18 -2.26 8.76 22.24 0.19 -2.07 16 28 C -0.07 -1.00 9.38 22.44 0.21 -0.79 16 29 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 30 H 0.02 0.94 7.20 -2.38 -0.02 0.92 16 31 H 0.02 0.88 7.57 -2.39 -0.02 0.86 16 32 H 0.06 2.32 8.14 -2.38 -0.02 2.30 16 33 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 34 H 0.06 1.94 8.14 -2.38 -0.02 1.92 16 35 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.42 8.35 8.45 -92.70 -0.78 7.57 16 37 H 0.16 2.08 6.06 -2.91 -0.02 2.06 16 38 H 0.12 2.64 7.52 -2.91 -0.02 2.62 16 39 H 0.14 1.53 8.06 -2.91 -0.02 1.50 16 40 H 0.14 1.26 7.18 -2.91 -0.02 1.24 16 41 H 0.06 0.52 7.51 -2.39 -0.02 0.50 16 42 H 0.10 0.71 7.22 -2.39 -0.02 0.69 16 43 H 0.12 0.54 8.14 -2.39 -0.02 0.52 16 44 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 45 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 46 H 0.12 0.50 8.14 -2.39 -0.02 0.48 16 47 H 0.05 0.49 8.14 -2.38 -0.02 0.48 16 48 H 0.11 0.64 6.83 -2.39 -0.02 0.62 16 49 H 0.14 1.30 5.78 -2.91 -0.02 1.28 16 50 H 0.14 1.47 6.16 -2.91 -0.02 1.45 16 Total: -1.00 -75.81 403.65 0.08 -75.73 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: 0.11 Total: 15.12 kcal Atomic # 6 Polarization: -24.66 SS G_CDS: 5.37 Total: -19.29 kcal Atomic # 7 Polarization: -83.79 SS G_CDS: -5.60 Total: -89.39 kcal Atomic # 8 Polarization: -26.97 SS G_CDS: -1.68 Total: -28.66 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 1.88 Total: 46.49 kcal Total: -75.81 0.08 -75.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171000018.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.853 kcal (2) G-P(sol) polarization free energy of solvation -75.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds