Wall clock time and date at job start Wed Apr 1 2020 02:51:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86795 * 120.00028 * 2 1 4 4 H 1.48498 * 109.47164 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47466 * 300.00097 * 3 2 1 6 6 H 1.48499 * 109.47423 * 60.00317 * 3 2 1 7 7 C 1.37870 * 119.99972 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00133 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00253 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.47551 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47263 * 180.02562 * 10 9 7 12 12 S 1.81402 * 109.47127 * 180.02562 * 11 10 9 13 13 O 1.42100 * 110.54626 * 68.37320 * 12 11 10 14 14 O 1.42101 * 110.53678 * 291.62219 * 12 11 10 15 15 N 1.65597 * 104.45066 * 180.02562 * 12 11 10 16 16 C 1.46499 * 119.99926 * 64.71997 * 15 12 11 17 17 H 1.09002 * 110.29131 * 25.95104 * 16 15 12 18 18 C 1.54263 * 110.32429 * 263.82283 * 16 15 12 19 19 C 1.54380 * 105.06241 * 241.10562 * 18 16 15 20 20 N 1.48556 * 104.59252 * 23.85199 * 19 18 16 21 21 C 1.46907 * 110.99929 * 200.96044 * 20 19 18 22 22 C 1.53000 * 109.47161 * 290.12748 * 21 20 19 23 23 C 1.54260 * 110.03164 * 292.90757 * 22 21 20 24 24 C 1.54964 * 104.15974 * 217.13524 * 23 22 21 25 25 C 1.54888 * 102.77510 * 37.88972 * 24 23 22 26 26 C 1.53876 * 110.03108 * 175.68848 * 22 21 20 27 27 C 1.48560 * 104.22233 * 320.51667 * 20 19 18 28 28 H 0.97003 * 119.99598 * 359.97438 * 1 2 3 29 29 H 1.09004 * 109.46961 * 59.99756 * 9 7 2 30 30 H 1.09006 * 109.47013 * 300.00636 * 9 7 2 31 31 H 1.09004 * 109.47140 * 59.99923 * 10 9 7 32 32 H 1.08998 * 109.47179 * 300.00384 * 10 9 7 33 33 H 1.08990 * 109.47200 * 59.99839 * 11 10 9 34 34 H 1.09004 * 109.47018 * 299.99639 * 11 10 9 35 35 H 0.97001 * 120.00224 * 245.00210 * 15 12 11 36 36 H 1.09004 * 110.32634 * 0.02562 * 18 16 15 37 37 H 1.09004 * 110.32423 * 122.10721 * 18 16 15 38 38 H 1.08994 * 110.41172 * 142.63193 * 19 18 16 39 39 H 1.09006 * 110.40764 * 265.07271 * 19 18 16 40 40 H 1.09003 * 109.46747 * 50.12665 * 21 20 19 41 41 H 1.09000 * 109.46789 * 170.12213 * 21 20 19 42 42 H 1.08996 * 110.01397 * 54.29873 * 22 21 20 43 43 H 1.09007 * 110.48849 * 335.78529 * 23 22 21 44 44 H 1.09004 * 110.48761 * 98.42615 * 23 22 21 45 45 H 1.08993 * 110.72386 * 279.57125 * 24 23 22 46 46 H 1.09001 * 110.76379 * 156.22227 * 24 23 22 47 47 H 1.09001 * 110.48291 * 203.40457 * 25 24 23 48 48 H 1.09003 * 110.48797 * 80.76025 * 25 24 23 49 49 H 1.09002 * 110.03077 * 238.56804 * 26 22 21 50 50 H 1.08994 * 110.03118 * 0.02562 * 26 22 21 51 51 H 1.09004 * 110.41190 * 280.70558 * 27 20 19 52 52 H 1.09004 * 110.41228 * 158.26586 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 6 1.4802 -4.9871 -0.0025 12 16 2.6590 -6.3659 -0.0032 13 8 3.3559 -6.4269 1.2336 14 8 3.3556 -6.4255 -1.2404 15 7 1.7086 -7.7221 -0.0046 16 6 0.8449 -8.0101 -1.1523 17 1 1.2497 -7.5514 -2.0545 18 6 -0.5863 -7.4991 -0.8874 19 6 -1.4780 -8.7582 -0.9404 20 7 -0.5578 -9.8820 -0.6286 21 6 -1.1027 -11.1580 -1.1112 22 6 -2.3170 -11.5466 -0.2653 23 6 -1.8745 -11.8712 1.1764 24 6 -2.7861 -13.0521 1.5959 25 6 -2.8902 -13.8838 0.2934 26 6 -2.9629 -12.8255 -0.8266 27 6 0.6975 -9.5349 -1.3432 28 1 -0.4850 0.8401 0.0004 29 1 0.6240 -2.5567 -0.8903 30 1 0.6246 -2.5571 0.8897 31 1 2.8726 -3.6047 0.8877 32 1 2.8712 -3.6039 -0.8922 33 1 0.8532 -5.0442 -0.8921 34 1 0.8539 -5.0455 0.8878 35 1 1.7208 -8.3236 0.7563 36 1 -0.6461 -7.0336 0.0965 37 1 -0.8840 -6.7896 -1.6595 38 1 -2.2688 -8.6957 -0.1929 39 1 -1.9039 -8.8807 -1.9363 40 1 -1.4044 -11.0533 -2.1534 41 1 -0.3402 -11.9327 -1.0298 42 1 -3.0428 -10.7335 -0.2590 43 1 -0.8271 -12.1726 1.1954 44 1 -2.0372 -11.0126 1.8279 45 1 -3.7676 -12.6914 1.9034 46 1 -2.3214 -13.6356 2.3907 47 1 -3.7938 -14.4935 0.3013 48 1 -2.0071 -14.5106 0.1693 49 1 -4.0025 -12.6332 -1.0918 50 1 -2.4111 -13.1695 -1.7013 51 1 0.6121 -9.7789 -2.4021 52 1 1.5448 -10.0573 -0.8989 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000173865035.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:51:57 Heat of formation + Delta-G solvation = -123.764342 kcal Electronic energy + Delta-G solvation = -28445.111318 eV Core-core repulsion = 24569.079054 eV Total energy + Delta-G solvation = -3876.032264 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.46324 -38.78184 -38.13810 -37.03936 -36.45816 -35.48248 -34.16071 -32.14484 -30.10748 -29.59807 -29.47800 -28.46828 -25.63995 -25.01938 -22.50336 -22.14756 -21.92179 -21.36493 -20.43140 -20.18804 -18.79054 -18.52491 -17.62604 -17.14968 -17.12914 -16.63881 -16.45748 -16.13826 -15.94041 -15.67542 -15.43196 -14.95729 -14.50566 -14.14973 -14.12778 -14.08416 -13.78608 -13.75866 -13.53041 -13.19007 -13.13121 -13.08938 -12.96007 -12.88089 -12.77168 -12.60281 -12.42349 -12.14086 -11.99180 -11.93016 -11.89923 -11.80790 -11.77720 -11.73464 -11.45297 -11.42553 -11.35411 -11.16814 -11.09408 -10.57690 -10.39303 -9.37131 -8.22715 -6.33286 -0.70943 1.39328 1.40247 1.53340 1.80305 2.39758 2.77624 3.02050 3.10877 3.24189 3.52065 3.68228 3.76716 3.80168 3.87114 3.93073 3.96057 4.18164 4.27908 4.36301 4.38145 4.41651 4.47113 4.55826 4.64801 4.67529 4.69399 4.72344 4.80723 4.86848 4.90060 4.94412 4.97543 4.99675 5.03318 5.07397 5.11767 5.14636 5.18805 5.30685 5.31741 5.44535 5.46448 5.52148 5.60341 5.64349 5.80230 5.91698 6.11947 6.15606 6.20468 6.82605 7.35968 8.88816 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.018202 B = 0.002022 C = 0.001912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.960343 B =13846.040836 C =14641.895005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.002 3.998 3 Si 0.962 3.038 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.551 4.551 8 H 0.059 0.941 9 C 0.032 3.968 10 C -0.106 4.106 11 C -0.608 4.608 12 S 2.630 3.370 13 O -0.994 6.994 14 O -0.990 6.990 15 N -1.096 6.096 16 C 0.137 3.863 17 H 0.102 0.898 18 C -0.156 4.156 19 C 0.037 3.963 20 N -0.514 5.514 21 C 0.054 3.946 22 C -0.085 4.085 23 C -0.104 4.104 24 C -0.130 4.130 25 C -0.123 4.123 26 C -0.119 4.119 27 C 0.032 3.968 28 H 0.265 0.735 29 H 0.004 0.996 30 H 0.002 0.998 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.145 0.855 34 H 0.145 0.855 35 H 0.426 0.574 36 H 0.083 0.917 37 H 0.088 0.912 38 H 0.083 0.917 39 H 0.053 0.947 40 H 0.040 0.960 41 H 0.077 0.923 42 H 0.066 0.934 43 H 0.061 0.939 44 H 0.055 0.945 45 H 0.063 0.937 46 H 0.065 0.935 47 H 0.067 0.933 48 H 0.065 0.935 49 H 0.064 0.936 50 H 0.068 0.932 51 H 0.068 0.932 52 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.313 -28.884 -2.547 29.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.196 4.196 3 Si 0.787 3.213 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.203 1.203 7 C -0.589 4.589 8 H 0.078 0.922 9 C -0.006 4.006 10 C -0.145 4.145 11 C -0.738 4.738 12 S 2.725 3.275 13 O -0.985 6.985 14 O -0.980 6.980 15 N -0.857 5.857 16 C 0.029 3.971 17 H 0.120 0.880 18 C -0.196 4.196 19 C -0.090 4.090 20 N -0.238 5.238 21 C -0.074 4.074 22 C -0.104 4.104 23 C -0.141 4.141 24 C -0.168 4.168 25 C -0.161 4.161 26 C -0.158 4.158 27 C -0.097 4.097 28 H 0.073 0.927 29 H 0.023 0.977 30 H 0.021 0.979 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.163 0.837 34 H 0.163 0.837 35 H 0.263 0.737 36 H 0.102 0.898 37 H 0.107 0.893 38 H 0.101 0.899 39 H 0.071 0.929 40 H 0.058 0.942 41 H 0.095 0.905 42 H 0.084 0.916 43 H 0.080 0.920 44 H 0.074 0.926 45 H 0.082 0.918 46 H 0.084 0.916 47 H 0.086 0.914 48 H 0.084 0.916 49 H 0.083 0.917 50 H 0.086 0.914 51 H 0.086 0.914 52 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -6.400 -28.758 -2.139 29.539 hybrid contribution -0.626 1.201 -0.451 1.427 sum -7.026 -27.557 -2.590 28.556 Atomic orbital electron populations 1.70075 1.07561 1.27780 1.51472 1.25925 0.95834 1.03192 0.94657 0.85436 0.79066 0.78913 0.77884 1.18848 1.20211 1.20281 1.21780 0.93730 0.92581 1.50845 0.92244 1.18954 0.93990 0.91748 0.95941 1.21307 0.98659 0.92580 1.01982 1.30546 1.16590 1.13652 1.13055 1.04190 0.75156 0.75342 0.72792 1.93534 1.72010 1.86482 1.46440 1.93531 1.71327 1.86330 1.46809 1.55360 1.60971 1.40811 1.28527 1.21713 0.90170 0.97170 0.88010 0.87989 1.23097 0.94001 0.98377 1.04091 1.23086 0.95711 0.89838 1.00410 1.65403 1.03391 1.02101 1.52936 1.22439 0.96932 0.91636 0.96432 1.21716 0.95972 0.97512 0.95164 1.22239 0.99131 0.97451 0.95310 1.22568 0.99742 0.96893 0.97556 1.22349 1.01832 0.97451 0.94464 1.22181 1.00695 0.94460 0.98414 1.23350 0.94362 0.93670 0.98327 0.92663 0.97720 0.97925 0.91764 0.91541 0.83668 0.83693 0.73700 0.89824 0.89342 0.89871 0.92866 0.94155 0.90505 0.91574 0.91996 0.92641 0.91835 0.91621 0.91392 0.91606 0.91672 0.91364 0.91409 0.88982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.44 13.29 21.45 0.28 -55.16 16 2 C 0.00 0.12 5.46 84.65 0.46 0.58 16 3 Si 0.96 44.21 29.54 68.60 2.03 46.24 16 4 H -0.26 -11.72 7.11 99.48 0.71 -11.02 16 5 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 6 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 7 C -0.55 -31.31 9.11 25.60 0.23 -31.08 16 8 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 9 C 0.03 1.63 4.97 29.85 0.15 1.78 16 10 C -0.11 -4.27 5.16 30.59 0.16 -4.11 16 11 C -0.61 -17.73 5.91 71.98 0.43 -17.31 16 12 S 2.63 73.39 5.44 -56.49 -0.31 73.08 16 13 O -0.99 -34.30 18.08 -127.65 -2.31 -36.61 16 14 O -0.99 -33.25 17.43 -127.65 -2.22 -35.48 16 15 N -1.10 -21.57 5.29 -165.67 -0.88 -22.44 16 16 C 0.14 2.32 3.61 45.89 0.17 2.49 16 17 H 0.10 1.75 7.55 -2.39 -0.02 1.73 16 18 C -0.16 -2.41 6.39 31.49 0.20 -2.21 16 19 C 0.04 0.52 5.75 86.45 0.50 1.01 16 20 N -0.51 -7.20 5.17 -881.48 -4.56 -11.76 16 21 C 0.05 0.64 3.86 86.30 0.33 0.97 16 22 C -0.08 -1.00 2.94 -10.07 -0.03 -1.03 16 23 C -0.10 -1.36 6.18 31.69 0.20 -1.17 16 24 C -0.13 -1.48 6.91 31.91 0.22 -1.26 16 25 C -0.12 -1.22 6.83 31.67 0.22 -1.01 16 26 C -0.12 -1.19 6.46 31.32 0.20 -0.99 16 27 C 0.03 0.46 6.13 86.45 0.53 0.99 16 28 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 29 H 0.00 0.24 8.14 -2.38 -0.02 0.22 16 30 H 0.00 0.13 8.14 -2.38 -0.02 0.11 16 31 H 0.06 2.56 8.14 -2.38 -0.02 2.54 16 32 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 33 H 0.15 3.65 7.90 -2.40 -0.02 3.63 16 34 H 0.14 3.76 8.14 -2.39 -0.02 3.74 16 35 H 0.43 7.35 8.80 -96.74 -0.85 6.49 16 36 H 0.08 1.36 7.95 -2.38 -0.02 1.35 16 37 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.08 1.16 7.63 -2.39 -0.02 1.14 16 39 H 0.05 0.66 7.82 -2.38 -0.02 0.64 16 40 H 0.04 0.45 7.88 -2.39 -0.02 0.43 16 41 H 0.08 0.90 8.01 -2.39 -0.02 0.88 16 42 H 0.07 0.86 7.07 -2.39 -0.02 0.84 16 43 H 0.06 0.88 7.77 -2.38 -0.02 0.86 16 44 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 45 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 46 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 47 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 48 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 49 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 50 H 0.07 0.62 7.67 -2.39 -0.02 0.60 16 51 H 0.07 0.83 8.00 -2.39 -0.02 0.81 16 52 H 0.09 1.32 8.05 -2.38 -0.02 1.30 16 Total: -1.00 -72.34 417.09 -3.99 -76.32 By element: Atomic # 1 Polarization: 18.11 SS G_CDS: 0.02 Total: 18.13 kcal Atomic # 6 Polarization: -56.29 SS G_CDS: 3.96 Total: -52.34 kcal Atomic # 7 Polarization: -84.21 SS G_CDS: -5.15 Total: -89.36 kcal Atomic # 8 Polarization: -67.55 SS G_CDS: -4.53 Total: -72.09 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Atomic # 16 Polarization: 73.39 SS G_CDS: -0.31 Total: 73.08 kcal Total: -72.34 -3.99 -76.32 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173865035.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.440 kcal (2) G-P(sol) polarization free energy of solvation -72.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds