Wall clock time and date at job start Wed Apr 1 2020 02:52:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99784 * 2 1 4 4 H 1.48501 * 109.47102 * 239.99696 * 3 2 1 5 5 H 1.48496 * 109.47330 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.46783 * 120.00079 * 3 2 1 7 7 C 1.37876 * 120.00125 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00239 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99647 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46827 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.47038 * 180.02562 * 10 9 7 12 12 S 1.81399 * 109.46847 * 180.02562 * 11 10 9 13 13 O 1.42103 * 110.54696 * 68.37491 * 12 11 10 14 14 O 1.42096 * 110.54329 * 291.61665 * 12 11 10 15 15 N 1.65607 * 104.44666 * 179.97438 * 12 11 10 16 16 C 1.46495 * 120.00153 * 64.99936 * 15 12 11 17 17 C 1.53100 * 109.52632 * 264.67783 * 16 15 12 18 18 C 1.53034 * 109.29029 * 182.43452 * 17 16 15 19 19 N 1.46845 * 109.51577 * 59.18741 * 18 17 16 20 20 C 1.46898 * 111.00004 * 174.16501 * 19 18 17 21 21 C 1.54256 * 110.03492 * 298.50123 * 20 19 18 22 22 C 1.54967 * 104.16382 * 217.14034 * 21 20 19 23 23 C 1.54884 * 102.77595 * 37.88694 * 22 21 20 24 24 C 1.53877 * 110.03017 * 181.28168 * 20 19 18 25 25 C 1.46852 * 111.19347 * 298.25886 * 19 18 17 26 26 C 1.53036 * 109.52339 * 61.74741 * 25 19 18 27 27 H 0.97005 * 120.00420 * 0.02562 * 1 2 3 28 28 H 1.08997 * 109.47421 * 60.00395 * 9 7 2 29 29 H 1.08995 * 109.47628 * 299.99856 * 9 7 2 30 30 H 1.08996 * 109.47474 * 60.00279 * 10 9 7 31 31 H 1.08998 * 109.47555 * 299.99934 * 10 9 7 32 32 H 1.08990 * 109.47307 * 60.00024 * 11 10 9 33 33 H 1.09005 * 109.46728 * 299.99486 * 11 10 9 34 34 H 0.96998 * 119.99934 * 244.99829 * 15 12 11 35 35 H 1.09000 * 109.52179 * 24.87204 * 16 15 12 36 36 H 1.09007 * 109.48924 * 62.49225 * 17 16 15 37 37 H 1.08997 * 109.50351 * 302.38509 * 17 16 15 38 38 H 1.08997 * 109.46477 * 299.16909 * 18 17 16 39 39 H 1.09004 * 109.45970 * 179.19221 * 18 17 16 40 40 H 1.09001 * 110.01785 * 59.89382 * 20 19 18 41 41 H 1.09007 * 110.48717 * 335.78750 * 21 20 19 42 42 H 1.09004 * 110.48748 * 98.42670 * 21 20 19 43 43 H 1.09000 * 110.71632 * 279.57065 * 22 21 20 44 44 H 1.08996 * 110.92214 * 156.29977 * 22 21 20 45 45 H 1.09002 * 110.48574 * 203.40810 * 23 22 21 46 46 H 1.08996 * 110.48814 * 80.76753 * 23 22 21 47 47 H 1.08996 * 110.03701 * 238.56733 * 24 20 19 48 48 H 1.08999 * 110.03762 * 0.02562 * 24 20 19 49 49 H 1.09006 * 109.45857 * 181.75949 * 25 19 18 50 50 H 1.08999 * 109.46651 * 301.73664 * 25 19 18 51 51 H 1.08999 * 109.50761 * 60.75754 * 26 25 19 52 52 H 1.08994 * 109.50446 * 180.87973 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4802 -4.9871 -0.0001 12 16 2.6591 -6.3658 0.0007 13 8 3.3550 -6.4263 1.2381 14 8 3.3566 -6.4262 -1.2359 15 7 1.7087 -7.7220 0.0006 16 6 0.8496 -8.0145 -1.1495 17 6 -0.5604 -7.4803 -0.8839 18 6 -1.4681 -7.8418 -2.0618 19 7 -1.5010 -9.3007 -2.2260 20 6 -2.4697 -9.6925 -3.2585 21 6 -3.8885 -9.2475 -2.8481 22 6 -4.8036 -10.3978 -3.3389 23 6 -3.9511 -11.6591 -3.0536 24 6 -2.5093 -11.2252 -3.3896 25 6 -0.1655 -9.8311 -2.5289 26 6 0.7809 -9.5289 -1.3649 27 1 -0.4851 0.8400 -0.0004 28 1 0.6247 -2.5571 -0.8897 29 1 0.6240 -2.5567 0.8902 30 1 2.8719 -3.6044 0.8905 31 1 2.8719 -3.6044 -0.8894 32 1 0.8539 -5.0446 -0.8902 33 1 0.8533 -5.0451 0.8898 34 1 1.7208 -8.3228 0.7620 35 1 1.2589 -7.5380 -2.0403 36 1 -0.5237 -6.3967 -0.7719 37 1 -0.9531 -7.9280 0.0290 38 1 -1.0824 -7.3825 -2.9719 39 1 -2.4764 -7.4753 -1.8690 40 1 -2.1991 -9.2429 -4.2138 41 1 -3.9569 -9.1414 -1.7653 42 1 -4.1525 -8.3120 -3.3413 43 1 -5.0057 -10.3013 -4.4056 44 1 -5.7340 -10.4240 -2.7718 45 1 -4.2613 -12.4826 -3.6967 46 1 -4.0293 -11.9430 -2.0042 47 1 -2.2588 -11.5194 -4.4088 48 1 -1.8101 -11.6783 -2.6869 49 1 -0.2278 -10.9095 -2.6757 50 1 0.2142 -9.3624 -3.4367 51 1 0.4093 -10.0087 -0.4596 52 1 1.7758 -9.9089 -1.5968 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000176939666.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:52:04 Heat of formation + Delta-G solvation = -123.082179 kcal Electronic energy + Delta-G solvation = -28900.066559 eV Core-core repulsion = 25024.063876 eV Total energy + Delta-G solvation = -3876.002683 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -40.69910 -38.51167 -38.09723 -37.07136 -36.48107 -35.61187 -34.18315 -32.06183 -31.65682 -29.69491 -29.42222 -27.78533 -25.67006 -24.25519 -24.11019 -22.39553 -21.25894 -21.22385 -20.51850 -20.21628 -18.70327 -18.49568 -17.98412 -17.24937 -17.11692 -16.58528 -16.47360 -16.23364 -15.75081 -15.60833 -15.23644 -14.88623 -14.78020 -14.49543 -14.32265 -14.16578 -14.08700 -13.56151 -13.37979 -13.23677 -13.18233 -13.16323 -12.97244 -12.74625 -12.70366 -12.64923 -12.45471 -12.17090 -12.13132 -11.99877 -11.91134 -11.79832 -11.74396 -11.65946 -11.61755 -11.38570 -11.34776 -11.26957 -11.06725 -10.57459 -10.32415 -9.23346 -8.23027 -6.33954 -0.74417 1.39586 1.42010 1.49946 1.75721 2.39268 2.73921 2.91005 3.10409 3.21342 3.62123 3.67042 3.76401 3.79442 3.86693 3.90011 4.04566 4.11326 4.25896 4.27706 4.37809 4.44034 4.48621 4.56636 4.61615 4.63259 4.64477 4.71605 4.78907 4.82870 4.84166 4.94667 4.96677 4.99390 5.04511 5.06148 5.11025 5.19462 5.23766 5.25942 5.30626 5.35433 5.43682 5.45062 5.53402 5.62846 5.79014 6.12646 6.17759 6.19415 6.25917 6.81411 7.35212 8.88163 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012570 B = 0.002422 C = 0.002091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2227.069375 B =11556.331229 C =13385.842015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.003 3.997 3 Si 0.962 3.038 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.553 4.553 8 H 0.060 0.940 9 C 0.033 3.967 10 C -0.106 4.106 11 C -0.610 4.610 12 S 2.628 3.372 13 O -0.992 6.992 14 O -0.992 6.992 15 N -1.101 6.101 16 C 0.141 3.859 17 C -0.142 4.142 18 C 0.054 3.946 19 N -0.532 5.532 20 C 0.077 3.923 21 C -0.118 4.118 22 C -0.123 4.123 23 C -0.119 4.119 24 C -0.119 4.119 25 C 0.051 3.949 26 C -0.111 4.111 27 H 0.265 0.735 28 H 0.003 0.997 29 H 0.003 0.997 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.143 0.857 33 H 0.148 0.852 34 H 0.427 0.573 35 H 0.080 0.920 36 H 0.073 0.927 37 H 0.089 0.911 38 H 0.030 0.970 39 H 0.085 0.915 40 H 0.035 0.965 41 H 0.071 0.929 42 H 0.060 0.940 43 H 0.068 0.932 44 H 0.070 0.930 45 H 0.071 0.929 46 H 0.064 0.936 47 H 0.067 0.933 48 H 0.076 0.924 49 H 0.097 0.903 50 H 0.030 0.970 51 H 0.088 0.912 52 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.124 -26.556 -6.062 28.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.195 4.195 3 Si 0.786 3.214 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.591 4.591 8 H 0.078 0.922 9 C -0.006 4.006 10 C -0.145 4.145 11 C -0.741 4.741 12 S 2.724 3.276 13 O -0.982 6.982 14 O -0.981 6.981 15 N -0.861 5.861 16 C 0.034 3.966 17 C -0.181 4.181 18 C -0.075 4.075 19 N -0.257 5.257 20 C -0.031 4.031 21 C -0.156 4.156 22 C -0.161 4.161 23 C -0.156 4.156 24 C -0.157 4.157 25 C -0.077 4.077 26 C -0.151 4.151 27 H 0.074 0.926 28 H 0.022 0.978 29 H 0.022 0.978 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.161 0.839 33 H 0.166 0.834 34 H 0.264 0.736 35 H 0.098 0.902 36 H 0.091 0.909 37 H 0.108 0.892 38 H 0.049 0.951 39 H 0.103 0.897 40 H 0.053 0.947 41 H 0.090 0.910 42 H 0.079 0.921 43 H 0.086 0.914 44 H 0.089 0.911 45 H 0.090 0.910 46 H 0.083 0.917 47 H 0.086 0.914 48 H 0.095 0.905 49 H 0.115 0.885 50 H 0.049 0.951 51 H 0.106 0.894 52 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -7.432 -26.544 -5.771 28.162 hybrid contribution -0.113 1.642 -0.442 1.704 sum -7.545 -24.902 -6.212 26.751 Atomic orbital electron populations 1.70059 1.07588 1.27949 1.51295 1.25923 0.95820 1.03183 0.94592 0.85549 0.78381 0.78261 0.79189 1.19267 1.20602 1.19255 1.21713 0.93720 0.92560 1.51144 0.92223 1.18942 0.93967 0.91734 0.95921 1.21310 0.98666 0.92511 1.02002 1.30623 1.16627 1.13820 1.13016 1.04226 0.75193 0.75405 0.72811 1.93535 1.72004 1.86468 1.46238 1.93530 1.71313 1.86325 1.46969 1.55336 1.61370 1.40873 1.28508 1.21040 0.89792 0.98523 0.87288 1.22274 0.94236 1.01482 1.00124 1.22062 1.00540 0.87913 0.96952 1.62172 1.07094 1.10860 1.45584 1.22348 0.92422 0.96341 0.92020 1.22448 0.93250 0.98300 1.01571 1.22479 0.98060 0.94400 1.01140 1.22297 0.94215 0.97582 1.01535 1.22278 0.98133 0.93536 1.01721 1.22187 0.87927 1.01474 0.96141 1.21806 0.99954 0.93166 1.00163 0.92625 0.97849 0.97844 0.91591 0.91653 0.83903 0.83393 0.73617 0.90165 0.90863 0.89243 0.95148 0.89708 0.94682 0.90994 0.92097 0.91365 0.91085 0.91010 0.91703 0.91391 0.90517 0.88491 0.95140 0.89381 0.90193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.63 13.29 21.45 0.28 -55.35 16 2 C 0.00 0.18 5.46 84.65 0.46 0.64 16 3 Si 0.96 44.22 29.54 68.60 2.03 46.24 16 4 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 5 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 6 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 7 C -0.55 -31.50 9.11 25.60 0.23 -31.26 16 8 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 9 C 0.03 1.68 4.97 29.85 0.15 1.82 16 10 C -0.11 -4.29 5.16 30.60 0.16 -4.13 16 11 C -0.61 -18.14 5.30 71.98 0.38 -17.76 16 12 S 2.63 74.46 5.44 -56.49 -0.31 74.15 16 13 O -0.99 -34.04 18.08 -127.65 -2.31 -36.35 16 14 O -0.99 -34.23 17.40 -127.65 -2.22 -36.45 16 15 N -1.10 -21.48 5.37 -169.09 -0.91 -22.39 16 16 C 0.14 2.55 2.76 45.07 0.12 2.67 16 17 C -0.14 -2.43 5.66 30.64 0.17 -2.26 16 18 C 0.05 0.91 5.29 86.33 0.46 1.37 16 19 N -0.53 -8.03 4.44 -866.89 -3.85 -11.88 16 20 C 0.08 1.07 2.67 45.64 0.12 1.19 16 21 C -0.12 -1.58 5.15 31.69 0.16 -1.42 16 22 C -0.12 -1.35 6.91 31.91 0.22 -1.13 16 23 C -0.12 -1.23 6.83 31.67 0.22 -1.02 16 24 C -0.12 -1.35 5.87 31.32 0.18 -1.16 16 25 C 0.05 0.71 5.17 86.32 0.45 1.16 16 26 C -0.11 -1.59 5.63 30.65 0.17 -1.42 16 27 H 0.26 14.91 8.31 -92.70 -0.77 14.14 16 28 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 29 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 30 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 31 H 0.06 2.61 8.14 -2.39 -0.02 2.59 16 32 H 0.14 3.76 6.76 -2.40 -0.02 3.74 16 33 H 0.15 3.85 8.14 -2.39 -0.02 3.83 16 34 H 0.43 6.50 8.80 -96.74 -0.85 5.65 16 35 H 0.08 1.65 7.48 -2.39 -0.02 1.63 16 36 H 0.07 1.33 5.88 -2.38 -0.01 1.31 16 37 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.03 0.55 8.14 -2.39 -0.02 0.53 16 39 H 0.08 1.39 6.84 -2.38 -0.02 1.37 16 40 H 0.04 0.54 8.14 -2.39 -0.02 0.52 16 41 H 0.07 1.08 7.85 -2.38 -0.02 1.06 16 42 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 43 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 44 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 45 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 46 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 47 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 48 H 0.08 0.88 6.19 -2.39 -0.01 0.86 16 49 H 0.10 1.09 5.98 -2.38 -0.01 1.08 16 50 H 0.03 0.47 8.14 -2.39 -0.02 0.45 16 51 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 52 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -72.63 407.05 -3.58 -76.21 By element: Atomic # 1 Polarization: 18.47 SS G_CDS: 0.03 Total: 18.51 kcal Atomic # 6 Polarization: -56.36 SS G_CDS: 3.66 Total: -52.70 kcal Atomic # 7 Polarization: -85.14 SS G_CDS: -4.47 Total: -89.61 kcal Atomic # 8 Polarization: -68.27 SS G_CDS: -4.53 Total: -72.80 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.24 kcal Atomic # 16 Polarization: 74.46 SS G_CDS: -0.31 Total: 74.15 kcal Total: -72.63 -3.58 -76.21 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176939666.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.869 kcal (2) G-P(sol) polarization free energy of solvation -72.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds