Wall clock time and date at job start Wed Apr 1 2020 02:32:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86794 * 120.00179 * 2 1 4 4 H 1.48502 * 109.47175 * 269.99882 * 3 2 1 5 5 H 1.48498 * 109.47096 * 29.99939 * 3 2 1 6 6 H 1.48498 * 109.47058 * 149.99887 * 3 2 1 7 7 C 1.37884 * 119.99627 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99638 * 0.02562 * 7 2 1 9 9 C 1.50695 * 119.99638 * 180.02562 * 7 2 1 10 10 N 1.46903 * 109.46865 * 184.69329 * 9 7 2 11 11 C 1.46900 * 111.00320 * 62.68237 * 10 9 7 12 12 C 1.53005 * 109.46956 * 66.04393 * 11 10 9 13 13 N 1.46900 * 109.46956 * 180.02562 * 12 11 10 14 14 C 1.47014 * 111.00049 * 293.63756 * 13 12 11 15 15 C 1.53096 * 109.25860 * 177.60969 * 14 13 12 16 16 O 1.43011 * 109.26197 * 56.84579 * 15 14 13 17 17 C 1.43014 * 113.73922 * 301.33586 * 16 15 14 18 18 C 1.47016 * 110.99905 * 170.00313 * 13 12 11 19 19 C 1.46896 * 110.99654 * 298.72869 * 10 9 7 20 20 C 1.50705 * 109.47332 * 287.56208 * 19 10 9 21 21 C 1.33996 * 124.92058 * 94.24308 * 20 19 10 22 22 C 1.46789 * 106.18128 * 179.90068 * 21 20 19 23 23 C 1.39404 * 134.36829 * 180.11940 * 22 21 20 24 24 C 1.36732 * 119.71578 * 180.26456 * 23 22 21 25 25 C 1.38743 * 120.41936 * 0.02562 * 24 23 22 26 26 C 1.37840 * 120.68272 * 359.97438 * 25 24 23 27 27 C 1.38939 * 119.82156 * 0.02562 * 26 25 24 28 28 O 1.34443 * 124.92263 * 274.55092 * 20 19 10 29 29 H 0.97003 * 119.99918 * 359.97438 * 1 2 3 30 30 H 1.08999 * 109.47328 * 64.68948 * 9 7 2 31 31 H 1.09003 * 109.46857 * 304.68865 * 9 7 2 32 32 H 1.09003 * 109.47196 * 306.04927 * 11 10 9 33 33 H 1.08997 * 109.47363 * 186.04365 * 11 10 9 34 34 H 1.09003 * 109.46732 * 60.00249 * 12 11 10 35 35 H 1.08991 * 109.47451 * 300.00321 * 12 11 10 36 36 H 1.09002 * 109.50966 * 297.54237 * 14 13 12 37 37 H 1.09000 * 109.50994 * 57.67424 * 14 13 12 38 38 H 1.09004 * 109.50319 * 296.91374 * 15 14 13 39 39 H 1.09002 * 109.54642 * 176.80674 * 15 14 13 40 40 H 1.08997 * 109.50872 * 298.73063 * 17 16 15 41 41 H 1.09003 * 109.54604 * 178.62123 * 17 16 15 42 42 H 1.08995 * 109.50328 * 302.32764 * 18 13 12 43 43 H 1.09001 * 109.50082 * 62.41392 * 18 13 12 44 44 H 1.08999 * 109.47566 * 47.56191 * 19 10 9 45 45 H 1.09007 * 109.47320 * 167.56568 * 19 10 9 46 46 H 1.07995 * 126.90835 * 0.02562 * 21 20 19 47 47 H 1.08000 * 120.13931 * 0.28216 * 23 22 21 48 48 H 1.08000 * 119.79241 * 179.97438 * 24 23 22 49 49 H 1.07996 * 119.65814 * 179.97438 * 25 24 23 50 50 H 1.08007 * 120.09208 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4400 0.7001 7 6 2.0045 -1.1942 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0011 10 7 4.0011 -2.5746 -0.1117 11 6 3.5837 -3.1790 -1.3839 12 6 4.2703 -2.4533 -2.5428 13 7 3.8524 -3.0573 -3.8150 14 6 4.3484 -4.4364 -3.9315 15 6 3.8414 -5.0463 -5.2410 16 8 4.2586 -4.2266 -6.3360 17 6 3.7928 -2.8769 -6.2550 18 6 4.2993 -2.2448 -4.9559 19 6 3.5546 -3.3863 1.0283 20 6 4.3185 -2.9818 2.2628 21 6 3.8984 -2.0848 3.1652 22 6 4.9491 -2.0102 4.1876 23 6 5.1137 -1.2822 5.3650 24 6 6.2480 -1.4465 6.1105 25 6 7.2350 -2.3319 5.7020 26 6 7.0898 -3.0602 4.5408 27 6 5.9449 -2.9083 3.7686 28 8 5.5228 -3.4644 2.6153 29 1 -0.4850 0.8401 0.0004 30 1 3.8745 -0.7546 0.9302 31 1 3.8751 -0.6095 -0.8439 32 1 2.5024 -3.0916 -1.4902 33 1 3.8662 -4.2316 -1.3960 34 1 5.3516 -2.5407 -2.4365 35 1 3.9879 -1.4007 -2.5307 36 1 5.4384 -4.4326 -3.9299 37 1 3.9846 -5.0264 -3.0903 38 1 2.7528 -5.0995 -5.2203 39 1 4.2525 -6.0489 -5.3595 40 1 2.7029 -2.8668 -6.2638 41 1 4.1688 -2.3096 -7.1064 42 1 3.8997 -1.2351 -4.8623 43 1 5.3885 -2.2054 -4.9700 44 1 2.4888 -3.2274 1.1923 45 1 3.7366 -4.4402 0.8175 46 1 2.9721 -1.5300 3.1455 47 1 4.3482 -0.5917 5.6871 48 1 6.3770 -0.8828 7.0227 49 1 8.1263 -2.4517 6.3001 50 1 7.8640 -3.7471 4.2320 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178540361.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:32:50 Heat of formation + Delta-G solvation = 5.596717 kcal Electronic energy + Delta-G solvation = -30302.743199 eV Core-core repulsion = 26296.876500 eV Total energy + Delta-G solvation = -4005.866699 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.10253 -39.50728 -37.86194 -37.29039 -35.43435 -32.64537 -32.40812 -31.19986 -30.46950 -30.21832 -28.99657 -27.73098 -26.12500 -24.35480 -23.92926 -22.77740 -22.42471 -21.41239 -20.69079 -20.25383 -19.49357 -17.15613 -17.03130 -16.61109 -16.46581 -16.10361 -15.87834 -15.32615 -15.19544 -15.01579 -14.82873 -14.51967 -14.23283 -14.20047 -13.94096 -13.55873 -13.22753 -12.85410 -12.83785 -12.62939 -12.42067 -12.19155 -12.07226 -11.85401 -11.74495 -11.46457 -11.37128 -11.21826 -11.10210 -10.83398 -10.67308 -10.63217 -10.44984 -10.20939 -9.97150 -9.79947 -9.63270 -9.59662 -8.66284 -8.42961 -8.20883 -7.86370 -7.39920 -6.18594 -4.18720 1.11698 1.53665 2.70487 3.04900 3.20836 3.30092 3.34691 3.77464 3.88995 3.94498 4.32570 4.65823 4.86087 4.90924 4.99474 5.02286 5.06520 5.09523 5.15997 5.17488 5.31015 5.33679 5.42753 5.48124 5.51064 5.57858 5.64686 5.66736 5.70005 5.77146 5.83774 5.88025 6.00413 6.04477 6.07198 6.14763 6.21752 6.34797 6.40177 6.47903 6.56742 6.68922 6.74733 6.83760 6.89030 7.01839 7.06616 7.15662 7.18483 7.43335 7.56602 7.82976 7.88020 8.33075 8.81233 9.44110 10.93796 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.009779 B = 0.003225 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2862.602168 B = 8680.994038 C =10743.634998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.079 3.921 3 Si 0.870 3.130 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.264 1.264 7 C -0.550 4.550 8 H 0.077 0.923 9 C 0.148 3.852 10 N -0.533 5.533 11 C 0.067 3.933 12 C 0.066 3.934 13 N -0.533 5.533 14 C 0.016 3.984 15 C 0.064 3.936 16 O -0.390 6.390 17 C 0.064 3.936 18 C 0.020 3.980 19 C 0.128 3.872 20 C 0.067 3.933 21 C -0.200 4.200 22 C -0.124 4.124 23 C -0.073 4.073 24 C -0.143 4.143 25 C -0.106 4.106 26 C -0.108 4.108 27 C 0.047 3.953 28 O -0.190 6.190 29 H 0.264 0.736 30 H 0.032 0.968 31 H 0.028 0.972 32 H 0.065 0.935 33 H 0.054 0.946 34 H 0.034 0.966 35 H 0.083 0.917 36 H 0.039 0.961 37 H 0.088 0.912 38 H 0.060 0.940 39 H 0.094 0.906 40 H 0.061 0.939 41 H 0.095 0.905 42 H 0.087 0.913 43 H 0.039 0.961 44 H 0.094 0.906 45 H 0.075 0.925 46 H 0.163 0.837 47 H 0.125 0.875 48 H 0.124 0.876 49 H 0.129 0.871 50 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.867 -6.858 0.626 12.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.124 4.124 3 Si 0.697 3.303 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.188 1.188 7 C -0.589 4.589 8 H 0.095 0.905 9 C 0.022 3.978 10 N -0.257 5.257 11 C -0.061 4.061 12 C -0.062 4.062 13 N -0.259 5.259 14 C -0.112 4.112 15 C -0.013 4.013 16 O -0.309 6.309 17 C -0.013 4.013 18 C -0.109 4.109 19 C 0.000 4.000 20 C 0.020 3.980 21 C -0.220 4.220 22 C -0.125 4.125 23 C -0.091 4.091 24 C -0.161 4.161 25 C -0.124 4.124 26 C -0.127 4.127 27 C -0.001 4.001 28 O -0.092 6.092 29 H 0.074 0.926 30 H 0.050 0.950 31 H 0.046 0.954 32 H 0.083 0.917 33 H 0.073 0.927 34 H 0.052 0.948 35 H 0.102 0.898 36 H 0.057 0.943 37 H 0.107 0.893 38 H 0.078 0.922 39 H 0.112 0.888 40 H 0.079 0.921 41 H 0.113 0.887 42 H 0.105 0.895 43 H 0.057 0.943 44 H 0.111 0.889 45 H 0.094 0.906 46 H 0.181 0.819 47 H 0.143 0.857 48 H 0.142 0.858 49 H 0.147 0.853 50 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 10.972 -7.008 0.305 13.023 hybrid contribution 0.102 1.382 0.354 1.431 sum 11.074 -5.626 0.659 12.439 Atomic orbital electron populations 1.69912 1.06274 1.27047 1.49913 1.24877 0.94572 0.98933 0.94064 0.86927 0.80641 0.83999 0.78717 1.20189 1.21213 1.18799 1.21538 0.90233 0.94626 1.52476 0.90525 1.20306 0.94844 0.85424 0.97258 1.62312 1.59171 1.04107 1.00134 1.21860 1.00188 0.96031 0.88005 1.22050 0.97130 0.99753 0.87253 1.62106 1.59731 1.01709 1.02343 1.22820 0.98128 0.91221 0.99070 1.22671 0.99643 0.93815 0.85205 1.87936 1.76017 1.21580 1.45365 1.22659 0.99263 0.82595 0.96738 1.22745 0.98464 0.98342 0.91341 1.20588 0.96718 0.96924 0.85769 1.22440 0.83158 0.95601 0.96848 1.22421 1.01618 1.03072 0.94847 1.20079 0.95594 0.99615 0.97189 1.20310 0.97792 0.98182 0.92824 1.20688 0.94446 1.00381 1.00617 1.20804 0.99309 0.96630 0.95640 1.19869 0.95175 1.02832 0.94788 1.19661 0.96562 0.96438 0.87426 1.83966 1.32684 1.57710 1.34827 0.92608 0.94959 0.95450 0.91713 0.92729 0.94797 0.89840 0.94262 0.89340 0.92199 0.88785 0.92120 0.88731 0.89480 0.94287 0.88858 0.90643 0.81950 0.85731 0.85829 0.85326 0.85518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.89 13.96 55.43 0.77 -25.11 16 2 C 0.08 2.14 5.47 -17.82 -0.10 2.04 16 3 Si 0.87 20.70 27.38 -169.99 -4.65 16.04 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.26 -6.15 6.68 56.52 0.38 -5.77 16 7 C -0.55 -14.06 7.88 -34.44 -0.27 -14.33 16 8 H 0.08 2.11 6.20 -52.49 -0.33 1.78 16 9 C 0.15 3.33 3.83 -4.98 -0.02 3.31 16 10 N -0.53 -10.38 4.65 -237.51 -1.11 -11.48 16 11 C 0.07 1.19 4.70 -3.82 -0.02 1.17 16 12 C 0.07 1.10 4.88 -3.82 -0.02 1.08 16 13 N -0.53 -8.03 4.73 -234.31 -1.11 -9.14 16 14 C 0.02 0.21 5.44 -3.71 -0.02 0.19 16 15 C 0.06 0.74 7.01 37.21 0.26 1.00 16 16 O -0.39 -5.15 10.83 -35.23 -0.38 -5.53 16 17 C 0.06 0.77 7.01 37.21 0.26 1.03 16 18 C 0.02 0.26 5.65 -3.71 -0.02 0.24 16 19 C 0.13 2.32 5.32 -4.98 -0.03 2.29 16 20 C 0.07 1.25 6.23 -35.80 -0.22 1.03 16 21 C -0.20 -3.72 9.97 -37.62 -0.38 -4.10 16 22 C -0.12 -2.13 6.40 -105.16 -0.67 -2.80 16 23 C -0.07 -1.05 10.05 -39.69 -0.40 -1.45 16 24 C -0.14 -1.72 9.98 -39.94 -0.40 -2.12 16 25 C -0.11 -1.22 10.01 -39.54 -0.40 -1.62 16 26 C -0.11 -1.46 10.07 -39.47 -0.40 -1.86 16 27 C 0.05 0.79 7.42 -38.47 -0.29 0.51 16 28 O -0.19 -3.48 10.58 3.92 0.04 -3.44 16 29 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 30 H 0.03 0.77 6.06 -51.93 -0.31 0.45 16 31 H 0.03 0.63 5.52 -51.93 -0.29 0.34 16 32 H 0.06 1.33 6.57 -51.93 -0.34 0.99 16 33 H 0.05 0.85 6.23 -51.93 -0.32 0.53 16 34 H 0.03 0.56 8.12 -51.93 -0.42 0.14 16 35 H 0.08 1.57 6.39 -51.93 -0.33 1.24 16 36 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.09 1.09 6.38 -51.93 -0.33 0.76 16 38 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.09 1.15 8.09 -51.93 -0.42 0.73 16 43 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.09 1.83 6.16 -51.93 -0.32 1.51 16 45 H 0.08 1.19 7.80 -51.93 -0.41 0.78 16 46 H 0.16 3.11 8.06 -52.49 -0.42 2.68 16 47 H 0.12 1.59 8.06 -52.49 -0.42 1.16 16 48 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 49 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 50 H 0.13 1.41 8.06 -52.48 -0.42 0.99 16 LS Contribution 391.31 15.07 5.90 5.90 Total: -1.00 -30.06 391.31 -11.29 -41.35 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: -7.63 Total: 5.80 kcal Atomic # 6 Polarization: -11.27 SS G_CDS: -3.12 Total: -14.38 kcal Atomic # 7 Polarization: -44.29 SS G_CDS: -1.44 Total: -45.73 kcal Atomic # 8 Polarization: -8.63 SS G_CDS: -0.34 Total: -8.97 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -4.65 Total: 16.04 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -30.06 -11.29 -41.35 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178540361.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.944 kcal (2) G-P(sol) polarization free energy of solvation -30.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.347 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds