Wall clock time and date at job start Wed Apr 1 2020 02:52:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 119.99665 * 2 1 4 4 H 1.48492 * 109.47032 * 269.99622 * 3 2 1 5 5 H 1.48498 * 109.46956 * 29.99886 * 3 2 1 6 6 H 1.48498 * 109.46893 * 149.99661 * 3 2 1 7 7 C 1.37875 * 120.00319 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00282 * 0.02562 * 7 2 1 9 9 C 1.50698 * 120.00190 * 180.02562 * 7 2 1 10 10 C 1.52995 * 109.47304 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47070 * 179.97438 * 10 9 7 12 12 N 1.46909 * 109.46969 * 179.97438 * 11 10 9 13 13 C 1.46846 * 110.99344 * 66.05286 * 12 11 10 14 14 C 1.53042 * 109.52231 * 185.83612 * 13 12 11 15 15 C 1.53111 * 109.27716 * 300.82094 * 14 13 12 16 16 C 1.53119 * 109.16379 * 57.65453 * 15 14 13 17 17 H 1.08991 * 109.50356 * 62.32414 * 16 15 14 18 18 S 1.81402 * 109.50328 * 182.40625 * 16 15 14 19 19 O 1.42102 * 110.54439 * 53.13972 * 18 16 15 20 20 O 1.42103 * 110.53841 * 189.88558 * 18 16 15 21 21 N 1.65595 * 104.44818 * 301.50851 * 18 16 15 22 22 C 1.46497 * 120.00479 * 294.78090 * 21 18 16 23 23 C 1.54269 * 110.03095 * 261.94121 * 22 21 18 24 24 C 1.54892 * 104.19554 * 217.10012 * 23 22 21 25 25 C 1.54889 * 102.74745 * 37.94437 * 24 23 22 26 26 C 1.53871 * 110.03660 * 144.77060 * 22 21 18 27 27 C 1.46845 * 110.99856 * 190.25742 * 12 11 10 28 28 H 0.96994 * 120.00492 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.47316 * 59.99916 * 9 7 2 30 30 H 1.09000 * 109.47198 * 300.00415 * 9 7 2 31 31 H 1.09004 * 109.47346 * 60.00062 * 10 9 7 32 32 H 1.09000 * 109.46978 * 300.00116 * 10 9 7 33 33 H 1.09000 * 109.47041 * 60.00384 * 11 10 9 34 34 H 1.09000 * 109.47482 * 300.00012 * 11 10 9 35 35 H 1.09001 * 109.46494 * 305.84895 * 13 12 11 36 36 H 1.08998 * 109.47077 * 65.81978 * 13 12 11 37 37 H 1.09007 * 109.50129 * 60.75860 * 14 13 12 38 38 H 1.09000 * 109.50637 * 180.87564 * 14 13 12 39 39 H 1.09000 * 109.52464 * 177.55506 * 15 14 13 40 40 H 1.08996 * 109.52501 * 297.68147 * 15 14 13 41 41 H 0.97004 * 119.99724 * 114.77889 * 21 18 16 42 42 H 1.09003 * 110.01709 * 23.37792 * 22 21 18 43 43 H 1.09001 * 110.48801 * 335.78011 * 23 22 21 44 44 H 1.09001 * 110.48439 * 98.42738 * 23 22 21 45 45 H 1.08997 * 110.75953 * 279.63047 * 24 23 22 46 46 H 1.09003 * 110.75425 * 156.25388 * 24 23 22 47 47 H 1.08996 * 110.49039 * 203.37891 * 25 24 23 48 48 H 1.09002 * 110.49029 * 80.73247 * 25 24 23 49 49 H 1.08994 * 110.03581 * 238.56861 * 26 22 21 50 50 H 1.09002 * 110.02838 * 359.95988 * 26 22 21 51 51 H 1.09003 * 109.46329 * 294.17737 * 27 12 11 52 52 H 1.08993 * 109.46508 * 54.14689 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4464 2.6527 0.7000 6 1 3.5465 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4647 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0011 10 6 4.0216 -2.6364 0.0010 11 6 5.5516 -2.6363 0.0009 12 7 6.0414 -4.0213 0.0014 13 6 5.6921 -4.7033 -1.2513 14 6 6.0874 -6.1788 -1.1577 15 6 7.5931 -6.2834 -0.9006 16 6 7.9376 -5.5242 0.3838 17 1 7.4246 -5.9852 1.2277 18 16 9.7296 -5.5820 0.6593 19 8 10.4263 -5.1294 -0.4936 20 8 10.0516 -5.0860 1.9515 21 7 10.0830 -7.1976 0.7422 22 6 9.5517 -8.0083 1.8407 23 6 10.6192 -8.1695 2.9428 24 6 10.4232 -9.6190 3.4524 25 6 10.0991 -10.3972 2.1530 26 6 9.2210 -9.4247 1.3386 27 6 7.4886 -4.0676 0.2455 28 1 -0.4850 0.8400 -0.0004 29 1 3.8746 -0.6799 0.8911 30 1 3.8752 -0.6803 -0.8888 31 1 3.6587 -3.1501 -0.8893 32 1 3.6579 -3.1504 0.8907 33 1 5.9149 -2.1226 0.8910 34 1 5.9150 -2.1224 -0.8890 35 1 4.6181 -4.6251 -1.4201 36 1 6.2247 -4.2365 -2.0798 37 1 5.5446 -6.6497 -0.3380 38 1 5.8422 -6.6813 -2.0934 39 1 7.8719 -7.3313 -0.7900 40 1 8.1370 -5.8483 -1.7390 41 1 10.6418 -7.6073 0.0634 42 1 8.6576 -7.5396 2.2518 43 1 11.6188 -8.0431 2.5270 44 1 10.4468 -7.4554 3.7481 45 1 9.5899 -9.6728 4.1529 46 1 11.3386 -9.9947 3.9096 47 1 9.5473 -11.3089 2.3819 48 1 11.0148 -10.6306 1.6096 49 1 8.1666 -9.6438 1.5066 50 1 9.4552 -9.5087 0.2773 51 1 8.0129 -3.6038 -0.5900 52 1 7.7196 -3.5277 1.1637 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183750777.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:52:07 Heat of formation + Delta-G solvation = -121.221992 kcal Electronic energy + Delta-G solvation = -29031.142532 eV Core-core repulsion = 25155.220513 eV Total energy + Delta-G solvation = -3875.922019 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.17531 -39.38514 -38.20669 -37.09260 -36.47383 -34.84447 -34.34290 -32.87176 -32.16773 -29.53285 -28.84326 -27.95415 -25.73158 -24.65384 -23.43935 -21.80647 -21.56286 -21.36896 -21.06745 -20.24576 -18.95472 -18.75682 -17.82872 -17.30236 -16.77665 -16.44117 -16.28252 -16.21039 -16.03363 -15.75913 -15.15326 -14.97704 -14.94079 -14.69813 -14.56057 -14.16528 -13.91731 -13.75929 -13.72249 -13.33526 -13.29760 -13.18532 -13.08490 -12.98728 -12.76730 -12.47469 -12.31515 -12.12567 -11.93787 -11.87697 -11.85521 -11.80915 -11.75312 -11.65156 -11.52659 -11.41075 -11.37782 -11.36371 -10.99600 -10.76314 -10.33938 -9.37565 -8.29774 -6.33677 -0.82235 1.34978 1.37112 1.49122 1.70433 2.35583 2.60726 2.94591 3.05408 3.10851 3.34270 3.60206 3.63687 3.75372 3.91761 3.99696 4.04332 4.13476 4.19673 4.24448 4.32665 4.38523 4.57970 4.59414 4.60042 4.63686 4.66251 4.70425 4.71606 4.72274 4.76021 4.85698 4.89028 4.95697 5.02044 5.02832 5.06467 5.13968 5.18040 5.30405 5.34536 5.37414 5.51087 5.52281 5.53675 5.59126 5.65850 6.01922 6.07055 6.13629 6.29406 6.74350 7.30728 8.87003 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.020072 B = 0.002145 C = 0.002101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.645939 B =13050.488502 C =13325.286396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.001 3.999 3 Si 0.952 3.048 4 H -0.267 1.267 5 H -0.284 1.284 6 H -0.247 1.247 7 C -0.530 4.530 8 H 0.031 0.969 9 C -0.012 4.012 10 C -0.085 4.085 11 C 0.057 3.943 12 N -0.532 5.532 13 C 0.039 3.961 14 C -0.103 4.103 15 C -0.102 4.102 16 C -0.571 4.571 17 H 0.160 0.840 18 S 2.624 3.376 19 O -0.989 6.989 20 O -0.988 6.988 21 N -1.098 6.098 22 C 0.141 3.859 23 C -0.146 4.146 24 C -0.125 4.125 25 C -0.124 4.124 26 C -0.129 4.129 27 C 0.059 3.941 28 H 0.266 0.734 29 H 0.020 0.980 30 H 0.017 0.983 31 H 0.050 0.950 32 H 0.051 0.949 33 H 0.078 0.922 34 H 0.036 0.964 35 H 0.073 0.927 36 H 0.034 0.966 37 H 0.076 0.924 38 H 0.091 0.909 39 H 0.111 0.889 40 H 0.075 0.925 41 H 0.426 0.574 42 H 0.094 0.906 43 H 0.069 0.931 44 H 0.062 0.938 45 H 0.073 0.927 46 H 0.070 0.930 47 H 0.075 0.925 48 H 0.068 0.932 49 H 0.086 0.914 50 H 0.087 0.913 51 H 0.046 0.954 52 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.102 -23.798 1.337 34.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.195 4.195 3 Si 0.775 3.225 4 H -0.192 1.192 5 H -0.210 1.210 6 H -0.170 1.170 7 C -0.569 4.569 8 H 0.049 0.951 9 C -0.050 4.050 10 C -0.123 4.123 11 C -0.071 4.071 12 N -0.257 5.257 13 C -0.089 4.089 14 C -0.142 4.142 15 C -0.141 4.141 16 C -0.682 4.682 17 H 0.178 0.822 18 S 2.718 3.282 19 O -0.979 6.979 20 O -0.978 6.978 21 N -0.859 5.859 22 C 0.034 3.966 23 C -0.186 4.186 24 C -0.163 4.163 25 C -0.162 4.162 26 C -0.168 4.168 27 C -0.071 4.071 28 H 0.075 0.925 29 H 0.038 0.962 30 H 0.035 0.965 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.096 0.904 34 H 0.054 0.946 35 H 0.091 0.909 36 H 0.052 0.948 37 H 0.095 0.905 38 H 0.110 0.890 39 H 0.130 0.870 40 H 0.093 0.907 41 H 0.263 0.737 42 H 0.112 0.888 43 H 0.087 0.913 44 H 0.080 0.920 45 H 0.091 0.909 46 H 0.089 0.911 47 H 0.094 0.906 48 H 0.087 0.913 49 H 0.104 0.896 50 H 0.105 0.895 51 H 0.064 0.936 52 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 25.272 -23.138 1.945 34.319 hybrid contribution -0.351 1.153 -0.860 1.481 sum 24.921 -21.985 1.085 33.250 Atomic orbital electron populations 1.70067 1.08277 1.28137 1.52749 1.26050 0.95668 1.03606 0.94210 0.85633 0.79505 0.78174 0.79178 1.19182 1.20965 1.17006 1.21481 0.92139 0.93039 1.50196 0.95064 1.19511 0.93908 0.95100 0.96453 1.21270 0.93302 0.96796 1.00972 1.22173 0.95586 0.88258 1.01045 1.61901 1.11945 1.15892 1.35942 1.22338 1.01290 0.95906 0.89361 1.21509 0.94907 0.94268 1.03496 1.21462 0.98287 1.01310 0.93024 1.30477 1.24140 1.03721 1.09848 0.82216 1.04484 0.77272 0.73399 0.73002 1.93548 1.71567 1.80337 1.52485 1.93572 1.82692 1.79411 1.42080 1.55447 1.65392 1.27985 1.37112 1.21672 0.96159 0.93115 0.85678 1.22912 0.99553 0.97930 0.98184 1.22508 1.02063 0.93864 0.97878 1.22372 0.99961 0.98202 0.95643 1.22511 1.01345 0.91771 1.01133 1.21852 0.89995 0.93129 1.02111 0.92521 0.96167 0.96466 0.93140 0.93066 0.90394 0.94594 0.90873 0.94791 0.90507 0.89042 0.87024 0.90672 0.73658 0.88770 0.91264 0.91965 0.90859 0.91136 0.90593 0.91317 0.89554 0.89458 0.93556 0.89351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.43 13.96 21.45 0.30 -60.13 16 2 C 0.00 0.07 5.47 84.65 0.46 0.53 16 3 Si 0.95 44.86 27.47 68.60 1.88 46.74 16 4 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 5 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 6 H -0.25 -10.78 6.54 99.48 0.65 -10.13 16 7 C -0.53 -31.08 9.66 25.60 0.25 -30.83 16 8 H 0.03 2.01 7.99 -2.91 -0.02 1.99 16 9 C -0.01 -0.56 4.04 29.85 0.12 -0.43 16 10 C -0.09 -3.34 5.09 30.59 0.16 -3.19 16 11 C 0.06 1.78 4.96 86.30 0.43 2.21 16 12 N -0.53 -14.01 4.66 -896.33 -4.17 -18.19 16 13 C 0.04 0.91 5.29 86.33 0.46 1.36 16 14 C -0.10 -1.64 6.09 30.65 0.19 -1.46 16 15 C -0.10 -1.32 5.15 30.67 0.16 -1.17 16 16 C -0.57 -9.12 2.81 30.65 0.09 -9.04 16 17 H 0.16 2.06 7.55 -2.39 -0.02 2.04 16 18 S 2.62 47.58 4.82 -56.49 -0.27 47.31 16 19 O -0.99 -24.07 17.97 -127.65 -2.29 -26.36 16 20 O -0.99 -25.01 17.81 -127.65 -2.27 -27.28 16 21 N -1.10 -11.91 4.97 -166.38 -0.83 -12.74 16 22 C 0.14 1.35 3.34 45.72 0.15 1.50 16 23 C -0.15 -1.76 6.53 31.67 0.21 -1.55 16 24 C -0.13 -1.05 6.91 31.89 0.22 -0.83 16 25 C -0.12 -0.75 6.83 31.67 0.22 -0.53 16 26 C -0.13 -0.70 6.57 31.32 0.21 -0.50 16 27 C 0.06 1.31 4.75 86.33 0.41 1.72 16 28 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 29 H 0.02 0.93 7.20 -2.39 -0.02 0.91 16 30 H 0.02 0.78 7.57 -2.39 -0.02 0.76 16 31 H 0.05 1.98 6.44 -2.38 -0.02 1.97 16 32 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.08 2.35 7.98 -2.39 -0.02 2.33 16 34 H 0.04 1.09 8.12 -2.39 -0.02 1.07 16 35 H 0.07 1.95 6.22 -2.39 -0.01 1.93 16 36 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16 38 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.11 0.72 7.95 -2.39 -0.02 0.70 16 40 H 0.07 1.05 8.08 -2.39 -0.02 1.03 16 41 H 0.43 3.11 8.64 -96.74 -0.84 2.27 16 42 H 0.09 0.80 7.28 -2.39 -0.02 0.78 16 43 H 0.07 0.89 8.05 -2.39 -0.02 0.87 16 44 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 45 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 46 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 47 H 0.08 0.36 8.14 -2.39 -0.02 0.34 16 48 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 49 H 0.09 0.35 8.14 -2.39 -0.02 0.33 16 50 H 0.09 0.30 7.75 -2.39 -0.02 0.28 16 51 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 52 H 0.09 1.93 8.01 -2.39 -0.02 1.91 16 Total: -1.00 -77.71 408.58 -3.95 -81.67 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -0.01 Total: 11.18 kcal Atomic # 6 Polarization: -45.91 SS G_CDS: 3.71 Total: -42.20 kcal Atomic # 7 Polarization: -86.35 SS G_CDS: -4.70 Total: -91.05 kcal Atomic # 8 Polarization: -49.08 SS G_CDS: -4.57 Total: -53.64 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 1.88 Total: 46.74 kcal Atomic # 16 Polarization: 47.58 SS G_CDS: -0.27 Total: 47.31 kcal Total: -77.71 -3.95 -81.67 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183750777.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.554 kcal (2) G-P(sol) polarization free energy of solvation -77.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds