Wall clock time and date at job start Wed Apr 1 2020 02:52:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 119.99863 * 2 1 4 4 H 1.48500 * 109.47047 * 270.00380 * 3 2 1 5 5 H 1.48496 * 109.47049 * 30.00143 * 3 2 1 6 6 H 1.48498 * 109.46815 * 150.00176 * 3 2 1 7 7 C 1.37876 * 119.99722 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00464 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99395 * 179.97438 * 7 2 1 10 10 C 1.53010 * 109.46764 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.46609 * 179.97438 * 10 9 7 12 12 N 1.46909 * 109.46685 * 180.02562 * 11 10 9 13 13 C 1.46845 * 110.99826 * 294.21066 * 12 11 10 14 14 C 1.53038 * 109.52192 * 174.16297 * 13 12 11 15 15 C 1.53111 * 109.28025 * 59.17993 * 14 13 12 16 16 C 1.53119 * 109.16031 * 302.34530 * 15 14 13 17 17 H 1.08998 * 109.53658 * 297.69375 * 16 15 14 18 18 S 1.81404 * 109.50486 * 177.59285 * 16 15 14 19 19 O 1.42093 * 110.54446 * 308.57945 * 18 16 15 20 20 O 1.42095 * 110.54308 * 171.81977 * 18 16 15 21 21 N 1.65605 * 104.44715 * 60.19945 * 18 16 15 22 22 C 1.46504 * 120.00185 * 64.99702 * 21 18 16 23 23 C 1.55238 * 110.46889 * 259.81142 * 22 21 18 24 24 C 1.54894 * 102.58338 * 203.39139 * 23 22 21 25 25 C 1.54266 * 104.31305 * 37.93170 * 24 23 22 26 26 C 1.53869 * 106.60031 * 336.32486 * 25 24 23 27 27 C 1.46847 * 111.00066 * 170.00322 * 12 11 10 28 28 H 0.96996 * 120.00456 * 359.97438 * 1 2 3 29 29 H 1.08996 * 109.47593 * 60.00265 * 9 7 2 30 30 H 1.08994 * 109.47383 * 299.99302 * 9 7 2 31 31 H 1.09001 * 109.46956 * 60.00261 * 10 9 7 32 32 H 1.08994 * 109.46833 * 299.99923 * 10 9 7 33 33 H 1.08996 * 109.47409 * 60.00757 * 11 10 9 34 34 H 1.08994 * 109.47722 * 299.99699 * 11 10 9 35 35 H 1.09001 * 109.46283 * 294.17798 * 13 12 11 36 36 H 1.08999 * 109.46553 * 54.15749 * 13 12 11 37 37 H 1.09003 * 109.50354 * 179.12339 * 14 13 12 38 38 H 1.09000 * 109.50033 * 299.23694 * 14 13 12 39 39 H 1.08998 * 109.52392 * 182.44429 * 15 14 13 40 40 H 1.08993 * 109.52728 * 62.25150 * 15 14 13 41 41 H 0.96996 * 120.00165 * 245.00121 * 21 18 16 42 42 H 1.09006 * 110.53855 * 22.39016 * 22 21 18 43 43 H 1.08996 * 110.89448 * 85.10703 * 23 22 21 44 44 H 1.08993 * 110.76342 * 321.62368 * 23 22 21 45 45 H 1.09002 * 110.48891 * 279.18596 * 24 23 22 46 46 H 1.08998 * 110.48494 * 156.67683 * 24 23 22 47 47 H 1.09001 * 110.03084 * 95.60669 * 25 24 23 48 48 H 1.08996 * 110.03108 * 216.98559 * 25 24 23 49 49 H 1.08999 * 110.04012 * 119.28327 * 26 25 24 50 50 H 1.09006 * 110.02998 * 240.67078 * 26 25 24 51 51 H 1.09001 * 109.46301 * 65.81956 * 27 12 11 52 52 H 1.09004 * 109.45412 * 305.85098 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 6 5.5515 -2.6365 -0.0022 12 7 6.0412 -4.0215 -0.0027 13 6 5.6876 -4.7051 1.2479 14 6 6.0832 -6.1805 1.1538 15 6 7.5898 -6.2848 0.9017 16 6 7.9387 -5.5239 -0.3805 17 1 7.4285 -5.9832 -1.2271 18 16 9.7317 -5.5813 -0.6500 19 8 10.4252 -5.1679 0.5193 20 8 10.0616 -5.0475 -1.9248 21 7 10.0783 -7.1954 -0.7811 22 6 9.5442 -7.9705 -1.9037 23 6 8.2974 -8.7815 -1.4591 24 6 8.2560 -9.9319 -2.4954 25 6 9.7383 -10.2927 -2.7242 26 6 10.5574 -9.0457 -2.3479 27 6 7.4894 -4.0676 -0.2419 28 1 -0.4850 0.8400 0.0004 29 1 3.8752 -0.6804 0.8888 30 1 3.8745 -0.6801 -0.8911 31 1 3.6579 -3.1506 -0.8908 32 1 3.6585 -3.1501 0.8892 33 1 5.9156 -2.1224 0.8873 34 1 5.9142 -2.1230 -0.8926 35 1 6.2174 -4.2393 2.0788 36 1 4.6130 -4.6273 1.4130 37 1 5.8348 -6.6842 2.0880 38 1 5.5433 -6.6503 0.3316 39 1 7.8689 -7.3326 0.7907 40 1 8.1308 -5.8498 1.7420 41 1 10.6349 -7.6276 -0.1146 42 1 9.2946 -7.3140 -2.7373 43 1 7.3953 -8.1729 -1.5214 44 1 8.4311 -9.1741 -0.4512 45 1 7.7983 -9.5922 -3.4245 46 1 7.7127 -10.7874 -2.0941 47 1 10.0210 -11.1311 -2.0876 48 1 9.9034 -10.5470 -3.7711 49 1 11.2377 -9.2788 -1.5288 50 1 11.1208 -8.6943 -3.2124 51 1 8.0108 -3.6048 0.5960 52 1 7.7233 -3.5265 -1.1588 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183750796.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:52:11 Heat of formation + Delta-G solvation = -122.627825 kcal Electronic energy + Delta-G solvation = -29205.160193 eV Core-core repulsion = 25329.177213 eV Total energy + Delta-G solvation = -3875.982981 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.18304 -39.33246 -38.23883 -37.12131 -36.46646 -34.83258 -34.41277 -32.87829 -32.16223 -29.56512 -28.81522 -27.91872 -25.73486 -24.63335 -23.43882 -21.79903 -21.68232 -21.26629 -21.01408 -20.28393 -18.96187 -18.76205 -17.81885 -17.40775 -16.76768 -16.45285 -16.33103 -16.18471 -16.04301 -15.75591 -15.11853 -14.97926 -14.73019 -14.68028 -14.56595 -14.23613 -13.98368 -13.80287 -13.69953 -13.32823 -13.29932 -13.20416 -13.08161 -12.95573 -12.72588 -12.52324 -12.35178 -12.30582 -11.99824 -11.90881 -11.82717 -11.79242 -11.73084 -11.67052 -11.51208 -11.41387 -11.32978 -11.23535 -10.99507 -10.75895 -10.31391 -9.36527 -8.29635 -6.33497 -0.82829 1.35561 1.36955 1.48963 1.68489 2.35708 2.60468 2.94879 3.05623 3.09100 3.34675 3.59174 3.63816 3.76198 3.92662 3.98953 4.04996 4.13505 4.20388 4.26657 4.30584 4.39102 4.57331 4.58307 4.62337 4.63083 4.65377 4.67838 4.71436 4.75860 4.76622 4.85468 4.89393 4.96209 5.01121 5.03501 5.05620 5.16153 5.18706 5.29369 5.34200 5.39640 5.50553 5.51324 5.55281 5.59920 5.66067 6.02817 6.07930 6.12679 6.29652 6.74586 7.30931 8.87187 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.018557 B = 0.002258 C = 0.002159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.492524 B =12396.679871 C =12963.972869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.001 3.999 3 Si 0.952 3.048 4 H -0.266 1.266 5 H -0.284 1.284 6 H -0.247 1.247 7 C -0.530 4.530 8 H 0.031 0.969 9 C -0.012 4.012 10 C -0.085 4.085 11 C 0.057 3.943 12 N -0.531 5.531 13 C 0.039 3.961 14 C -0.102 4.102 15 C -0.103 4.103 16 C -0.569 4.569 17 H 0.160 0.840 18 S 2.624 3.376 19 O -0.988 6.988 20 O -0.992 6.992 21 N -1.097 6.097 22 C 0.133 3.867 23 C -0.146 4.146 24 C -0.126 4.126 25 C -0.122 4.122 26 C -0.128 4.128 27 C 0.059 3.941 28 H 0.266 0.734 29 H 0.018 0.982 30 H 0.019 0.981 31 H 0.051 0.949 32 H 0.050 0.950 33 H 0.035 0.965 34 H 0.078 0.922 35 H 0.033 0.967 36 H 0.073 0.927 37 H 0.090 0.910 38 H 0.077 0.923 39 H 0.109 0.891 40 H 0.075 0.925 41 H 0.427 0.573 42 H 0.091 0.909 43 H 0.077 0.923 44 H 0.090 0.910 45 H 0.066 0.934 46 H 0.075 0.925 47 H 0.073 0.927 48 H 0.067 0.933 49 H 0.080 0.920 50 H 0.067 0.933 51 H 0.046 0.954 52 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.500 -23.731 -1.360 34.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.195 4.195 3 Si 0.775 3.225 4 H -0.191 1.191 5 H -0.210 1.210 6 H -0.171 1.171 7 C -0.568 4.568 8 H 0.049 0.951 9 C -0.050 4.050 10 C -0.123 4.123 11 C -0.070 4.070 12 N -0.256 5.256 13 C -0.089 4.089 14 C -0.141 4.141 15 C -0.141 4.141 16 C -0.681 4.681 17 H 0.178 0.822 18 S 2.719 3.281 19 O -0.978 6.978 20 O -0.982 6.982 21 N -0.858 5.858 22 C 0.026 3.974 23 C -0.185 4.185 24 C -0.164 4.164 25 C -0.160 4.160 26 C -0.167 4.167 27 C -0.071 4.071 28 H 0.075 0.925 29 H 0.036 0.964 30 H 0.037 0.963 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.053 0.947 34 H 0.097 0.903 35 H 0.052 0.948 36 H 0.091 0.909 37 H 0.109 0.891 38 H 0.096 0.904 39 H 0.128 0.872 40 H 0.093 0.907 41 H 0.264 0.736 42 H 0.109 0.891 43 H 0.096 0.904 44 H 0.108 0.892 45 H 0.085 0.915 46 H 0.094 0.906 47 H 0.091 0.909 48 H 0.086 0.914 49 H 0.099 0.901 50 H 0.086 0.914 51 H 0.064 0.936 52 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 24.701 -23.063 -1.947 33.850 hybrid contribution -0.389 1.052 0.829 1.395 sum 24.313 -22.011 -1.118 32.815 Atomic orbital electron populations 1.70070 1.08281 1.28133 1.52773 1.26048 0.95659 1.03593 0.94207 0.85632 0.79446 0.78183 0.79218 1.19144 1.20980 1.17067 1.21485 0.92148 0.93039 1.50176 0.95057 1.19512 0.93898 0.95124 0.96440 1.21269 0.93315 0.96772 1.00967 1.22169 0.95565 0.88278 1.01036 1.61900 1.11776 1.15797 1.36090 1.22332 1.01257 0.95866 0.89398 1.21498 0.94808 0.94288 1.03491 1.21482 0.98341 1.01209 0.93071 1.30501 1.23923 1.03738 1.09888 0.82192 1.04431 0.77350 0.73362 0.72918 1.93548 1.71707 1.81235 1.51300 1.93561 1.82691 1.78397 1.43517 1.55294 1.65488 1.28496 1.36490 1.21991 0.94461 0.93536 0.87396 1.23212 0.97213 0.97415 1.00664 1.22330 0.96602 0.98378 0.99123 1.22106 0.94716 0.97234 1.01958 1.22405 0.97759 0.94559 1.01984 1.21855 0.90011 0.93069 1.02123 0.92524 0.96371 0.96283 0.93054 0.93152 0.94688 0.90324 0.94824 0.90885 0.89107 0.90446 0.87234 0.90650 0.73608 0.89069 0.90415 0.89192 0.91486 0.90605 0.90865 0.91404 0.90100 0.91421 0.93567 0.89307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.44 13.96 21.45 0.30 -60.14 16 2 C 0.00 0.09 5.47 84.65 0.46 0.55 16 3 Si 0.95 44.86 27.47 68.60 1.88 46.74 16 4 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 5 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 6 H -0.25 -10.80 6.54 99.48 0.65 -10.15 16 7 C -0.53 -31.06 9.66 25.60 0.25 -30.81 16 8 H 0.03 2.01 7.99 -2.91 -0.02 1.99 16 9 C -0.01 -0.56 4.04 29.85 0.12 -0.43 16 10 C -0.09 -3.33 5.08 30.60 0.16 -3.17 16 11 C 0.06 1.78 4.96 86.30 0.43 2.21 16 12 N -0.53 -13.88 4.66 -896.36 -4.17 -18.06 16 13 C 0.04 0.91 5.29 86.33 0.46 1.37 16 14 C -0.10 -1.62 6.09 30.64 0.19 -1.44 16 15 C -0.10 -1.35 5.15 30.67 0.16 -1.19 16 16 C -0.57 -9.18 2.91 30.65 0.09 -9.09 16 17 H 0.16 2.11 7.42 -2.39 -0.02 2.09 16 18 S 2.62 48.13 4.88 -56.49 -0.28 47.85 16 19 O -0.99 -24.01 17.90 -127.65 -2.28 -26.29 16 20 O -0.99 -25.50 17.44 -127.65 -2.23 -27.72 16 21 N -1.10 -12.11 5.23 -164.41 -0.86 -12.97 16 22 C 0.13 1.32 3.43 46.19 0.16 1.48 16 23 C -0.15 -1.03 5.86 32.01 0.19 -0.84 16 24 C -0.13 -0.88 6.82 31.67 0.22 -0.66 16 25 C -0.12 -0.81 6.80 31.32 0.21 -0.59 16 26 C -0.13 -1.05 6.53 31.32 0.20 -0.85 16 27 C 0.06 1.31 4.75 86.32 0.41 1.72 16 28 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 29 H 0.02 0.83 7.20 -2.39 -0.02 0.82 16 30 H 0.02 0.86 7.57 -2.39 -0.02 0.85 16 31 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 32 H 0.05 1.98 6.43 -2.39 -0.02 1.96 16 33 H 0.03 1.07 8.12 -2.39 -0.02 1.05 16 34 H 0.08 2.35 7.99 -2.39 -0.02 2.33 16 35 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.07 1.94 6.21 -2.39 -0.01 1.93 16 37 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.11 0.78 6.95 -2.39 -0.02 0.76 16 40 H 0.07 1.07 8.04 -2.39 -0.02 1.05 16 41 H 0.43 3.12 8.61 -96.75 -0.83 2.29 16 42 H 0.09 1.09 7.56 -2.38 -0.02 1.07 16 43 H 0.08 0.54 7.42 -2.39 -0.02 0.53 16 44 H 0.09 0.44 7.87 -2.39 -0.02 0.42 16 45 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 46 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 47 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 48 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 49 H 0.08 0.53 7.82 -2.39 -0.02 0.51 16 50 H 0.07 0.63 8.14 -2.38 -0.02 0.61 16 51 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 52 H 0.09 1.93 8.02 -2.38 -0.02 1.92 16 Total: -1.00 -77.30 406.09 -3.95 -81.24 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -0.01 Total: 11.11 kcal Atomic # 6 Polarization: -45.45 SS G_CDS: 3.70 Total: -41.75 kcal Atomic # 7 Polarization: -86.44 SS G_CDS: -4.73 Total: -91.17 kcal Atomic # 8 Polarization: -49.51 SS G_CDS: -4.51 Total: -54.02 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 1.88 Total: 46.74 kcal Atomic # 16 Polarization: 48.13 SS G_CDS: -0.28 Total: 47.85 kcal Total: -77.30 -3.95 -81.24 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183750796.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.385 kcal (2) G-P(sol) polarization free energy of solvation -77.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds