Wall clock time and date at job start Wed Apr 1 2020 03:49:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86799 * 119.99889 * 2 1 4 4 H 1.48496 * 109.47150 * 269.99939 * 3 2 1 5 5 H 1.48503 * 109.47111 * 30.00149 * 3 2 1 6 6 H 1.48508 * 109.47183 * 149.99636 * 3 2 1 7 7 C 1.38656 * 120.00117 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00225 * 179.97438 * 7 2 1 9 9 O 1.34836 * 119.99804 * 0.02562 * 7 2 1 10 10 C 1.35753 * 116.99499 * 185.05245 * 9 7 2 11 11 C 1.38868 * 120.07385 * 354.47001 * 10 9 7 12 12 C 1.38099 * 119.93534 * 180.02562 * 11 10 9 13 13 C 1.38308 * 120.06484 * 0.02562 * 12 11 10 14 14 C 1.50695 * 119.92946 * 179.97438 * 13 12 11 15 15 C 1.50700 * 109.47350 * 90.00024 * 14 13 12 16 16 O 1.21280 * 119.99920 * 359.97438 * 15 14 13 17 17 N 1.34774 * 120.00269 * 179.97438 * 15 14 13 18 18 C 1.47078 * 120.88321 * 179.97438 * 17 15 14 19 19 C 1.53238 * 108.52217 * 128.79462 * 18 17 15 20 20 N 1.46898 * 109.33887 * 53.82970 * 19 18 17 21 21 C 1.46904 * 110.99624 * 172.74707 * 20 19 18 22 22 C 1.53775 * 113.61608 * 274.13508 * 21 20 19 23 23 C 1.53952 * 87.02210 * 220.05219 * 22 21 20 24 24 C 1.53778 * 87.11233 * 25.36164 * 23 22 21 25 25 C 1.46898 * 111.27061 * 296.89184 * 20 19 18 26 26 C 1.47086 * 120.88191 * 359.97438 * 17 15 14 27 27 C 1.38297 * 120.13937 * 0.25078 * 13 12 11 28 28 C 1.38105 * 120.06953 * 359.45594 * 27 13 12 29 29 H 0.96990 * 119.99768 * 0.02562 * 1 2 3 30 30 H 1.08008 * 120.03206 * 359.97438 * 11 10 9 31 31 H 1.07998 * 119.96920 * 179.97438 * 12 11 10 32 32 H 1.08998 * 109.47010 * 329.99784 * 14 13 12 33 33 H 1.09005 * 109.47064 * 209.99694 * 14 13 12 34 34 H 1.09000 * 109.63049 * 9.07945 * 18 17 15 35 35 H 1.09006 * 109.62827 * 248.50618 * 18 17 15 36 36 H 1.09001 * 109.49070 * 173.79053 * 19 18 17 37 37 H 1.08996 * 109.49448 * 293.86991 * 19 18 17 38 38 H 1.09003 * 112.85024 * 45.33616 * 21 20 19 39 39 H 1.09005 * 113.61684 * 334.56495 * 22 21 20 40 40 H 1.08996 * 113.61908 * 105.47178 * 22 21 20 41 41 H 1.09008 * 113.53651 * 270.81293 * 23 22 21 42 42 H 1.09002 * 113.74805 * 139.94488 * 23 22 21 43 43 H 1.08999 * 113.61812 * 220.09554 * 24 23 22 44 44 H 1.09001 * 113.61604 * 89.18605 * 24 23 22 45 45 H 1.08992 * 109.49497 * 303.14954 * 25 20 19 46 46 H 1.09000 * 109.51579 * 183.07824 * 25 20 19 47 47 H 1.09007 * 109.62583 * 350.91674 * 26 17 15 48 48 H 1.08993 * 109.62873 * 111.49325 * 26 17 15 49 49 H 1.07996 * 119.96821 * 179.70721 * 27 13 12 50 50 H 1.07996 * 120.03795 * 180.27047 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4971 2.0464 -1.4000 5 1 1.4470 2.6527 0.7001 6 1 3.5472 1.4402 0.7001 7 6 2.0089 -1.2008 0.0005 8 1 3.0889 -1.2008 0.0001 9 8 1.3347 -2.3685 0.0005 10 6 2.0701 -3.5046 0.1076 11 6 3.4571 -3.4395 0.0952 12 6 4.2024 -4.5970 0.2038 13 6 3.5686 -5.8204 0.3242 14 6 4.3848 -7.0817 0.4419 15 6 4.6631 -7.3662 1.8954 16 8 4.2407 -6.6181 2.7515 17 7 5.3814 -8.4519 2.2441 18 6 5.6651 -8.7478 3.6566 19 6 5.2670 -10.2004 3.9392 20 7 5.9337 -11.0841 2.9735 21 6 5.7160 -12.4962 3.3148 22 6 6.7312 -13.0483 4.3293 23 6 6.7431 -14.3407 3.4928 24 6 6.3179 -13.4765 2.2941 25 6 5.4947 -10.8007 1.6005 26 6 5.9026 -9.3725 1.2221 27 6 2.1873 -5.8892 0.3312 28 6 1.4365 -4.7346 0.2290 29 1 -0.4849 0.8400 -0.0004 30 1 3.9527 -2.4845 -0.0001 31 1 5.2812 -4.5471 0.1938 32 1 5.3274 -6.9555 -0.0906 33 1 3.8311 -7.9146 0.0083 34 1 5.0868 -8.0790 4.2941 35 1 6.7292 -8.6151 3.8520 36 1 5.5716 -10.4708 4.9502 37 1 4.1865 -10.3066 3.8437 38 1 4.6794 -12.7148 3.5713 39 1 7.6836 -12.5180 4.3268 40 1 6.3210 -13.1790 5.3306 41 1 5.9877 -15.0645 3.7992 42 1 7.7332 -14.7832 3.3827 43 1 5.5742 -13.9522 1.6547 44 1 7.1568 -13.0633 1.7342 45 1 4.4110 -10.8985 1.5376 46 1 5.9640 -11.5065 0.9152 47 1 5.4812 -9.1167 0.2499 48 1 6.9894 -9.2997 1.1838 49 1 1.6953 -6.8464 0.4206 50 1 0.3579 -4.7884 0.2389 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264961716.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:49:49 Heat of formation + Delta-G solvation = -2.791699 kcal Electronic energy + Delta-G solvation = -29325.866940 eV Core-core repulsion = 25319.636493 eV Total energy + Delta-G solvation = -4006.230448 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -40.53301 -39.49857 -38.77069 -37.17586 -36.32939 -33.89111 -32.47865 -31.87286 -30.92963 -30.09531 -27.99180 -26.48473 -26.16706 -25.08798 -24.07031 -23.60951 -21.91920 -21.71841 -20.49288 -19.78174 -18.96890 -17.92829 -17.40842 -16.92273 -16.25607 -15.95084 -15.87859 -15.50237 -15.29898 -14.85659 -14.53514 -14.38420 -14.21770 -13.70172 -13.64124 -13.55212 -13.32757 -13.16921 -12.86585 -12.82591 -12.64871 -12.42924 -12.16014 -11.91614 -11.80346 -11.67007 -11.59454 -11.46090 -11.21924 -11.10144 -10.86695 -10.78757 -10.70173 -10.61897 -10.56261 -10.38868 -9.62601 -9.27243 -8.98063 -8.77184 -8.57441 -8.09496 -7.10769 -6.39896 -3.98396 2.29693 2.31178 2.77156 2.93175 3.16157 3.17665 3.22335 3.47307 4.01320 4.06872 4.24212 4.40021 4.40207 4.48984 4.57889 4.67648 4.87349 4.91453 4.91786 5.04483 5.11672 5.13457 5.18448 5.22951 5.28451 5.32875 5.37382 5.37834 5.39757 5.43836 5.49999 5.54414 5.60747 5.69615 5.73132 5.78514 5.81556 5.89792 5.92695 6.26812 6.36740 6.47214 6.62318 6.68090 6.75808 6.96978 7.10788 7.29138 7.37496 7.42702 7.50424 7.89479 8.05530 8.31252 9.05906 9.76749 10.78316 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.034286 B = 0.001744 C = 0.001726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.474099 B =16052.413338 C =16221.592581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.038 3.962 3 Si 0.941 3.059 4 H -0.273 1.273 5 H -0.278 1.278 6 H -0.268 1.268 7 C -0.391 4.391 8 H 0.092 0.908 9 O -0.179 6.179 10 C 0.156 3.844 11 C -0.232 4.232 12 C -0.056 4.056 13 C -0.170 4.170 14 C -0.078 4.078 15 C 0.512 3.488 16 O -0.520 6.520 17 N -0.624 5.624 18 C 0.117 3.883 19 C 0.043 3.957 20 N -0.526 5.526 21 C 0.052 3.948 22 C -0.125 4.125 23 C -0.143 4.143 24 C -0.133 4.133 25 C 0.039 3.961 26 C 0.113 3.887 27 C -0.060 4.060 28 C -0.191 4.191 29 H 0.269 0.731 30 H 0.127 0.873 31 H 0.104 0.896 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.095 0.905 35 H 0.071 0.929 36 H 0.085 0.915 37 H 0.038 0.962 38 H 0.065 0.935 39 H 0.090 0.910 40 H 0.063 0.937 41 H 0.078 0.922 42 H 0.071 0.929 43 H 0.065 0.935 44 H 0.090 0.910 45 H 0.038 0.962 46 H 0.088 0.912 47 H 0.091 0.909 48 H 0.075 0.925 49 H 0.107 0.893 50 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.834 -27.523 3.852 31.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.166 4.166 3 Si 0.765 3.235 4 H -0.199 1.199 5 H -0.203 1.203 6 H -0.192 1.192 7 C -0.467 4.467 8 H 0.109 0.891 9 O -0.082 6.082 10 C 0.103 3.897 11 C -0.251 4.251 12 C -0.075 4.075 13 C -0.171 4.171 14 C -0.118 4.118 15 C 0.301 3.699 16 O -0.394 6.394 17 N -0.361 5.361 18 C -0.006 4.006 19 C -0.086 4.086 20 N -0.251 5.251 21 C -0.057 4.057 22 C -0.163 4.163 23 C -0.181 4.181 24 C -0.170 4.170 25 C -0.090 4.090 26 C -0.011 4.011 27 C -0.078 4.078 28 C -0.211 4.211 29 H 0.079 0.921 30 H 0.144 0.856 31 H 0.122 0.878 32 H 0.110 0.890 33 H 0.108 0.892 34 H 0.113 0.887 35 H 0.089 0.911 36 H 0.103 0.897 37 H 0.056 0.944 38 H 0.083 0.917 39 H 0.109 0.891 40 H 0.082 0.918 41 H 0.097 0.903 42 H 0.089 0.911 43 H 0.084 0.916 44 H 0.109 0.891 45 H 0.057 0.943 46 H 0.106 0.894 47 H 0.109 0.891 48 H 0.093 0.907 49 H 0.125 0.875 50 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 14.642 -26.757 4.324 30.806 hybrid contribution -0.351 0.543 0.016 0.646 sum 14.291 -26.215 4.340 30.171 Atomic orbital electron populations 1.70041 1.05939 1.27573 1.46333 1.25283 0.95840 0.98798 0.96629 0.85717 0.78957 0.80137 0.78642 1.19916 1.20279 1.19204 1.21332 0.91804 0.80861 1.52701 0.89088 1.83978 1.34348 1.11452 1.78453 1.19375 0.90293 0.88021 0.92026 1.21104 0.93806 0.98758 1.11456 1.20504 0.98033 0.91761 0.97153 1.18643 0.93195 0.92790 1.12464 1.20428 1.01040 0.97883 0.92414 1.21075 0.76940 0.79674 0.92217 1.90736 1.49983 1.46578 1.52093 1.48265 1.54896 1.25906 1.07023 1.21606 1.01409 0.94750 0.82824 1.22469 0.96696 0.92858 0.96552 1.62199 1.57645 1.03163 1.02081 1.23215 0.97618 0.86862 0.97978 1.22987 1.00027 0.96059 0.97230 1.22750 1.01873 0.96466 0.96973 1.23022 1.01016 0.96515 0.96480 1.22487 0.98752 0.97033 0.90705 1.21823 0.99768 0.87831 0.91632 1.20382 0.92767 0.96656 0.98028 1.20150 0.99457 0.90290 1.11160 0.92092 0.85581 0.87836 0.89040 0.89170 0.88682 0.91094 0.89683 0.94392 0.91680 0.89127 0.91794 0.90346 0.91063 0.91631 0.89149 0.94341 0.89354 0.89089 0.90684 0.87519 0.86573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.90 13.67 55.48 0.76 -25.14 16 2 C 0.04 1.09 5.49 -17.51 -0.10 0.99 16 3 Si 0.94 21.06 29.55 -169.99 -5.02 16.04 16 4 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 5 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 6 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 7 C -0.39 -11.26 9.49 30.89 0.29 -10.97 16 8 H 0.09 2.44 5.20 -52.49 -0.27 2.16 16 9 O -0.18 -5.29 9.76 0.02 0.00 -5.29 16 10 C 0.16 3.97 6.65 -39.11 -0.26 3.71 16 11 C -0.23 -5.32 9.17 -39.40 -0.36 -5.68 16 12 C -0.06 -1.10 9.69 -39.61 -0.38 -1.48 16 13 C -0.17 -3.04 4.38 -104.58 -0.46 -3.50 16 14 C -0.08 -1.02 4.19 -29.04 -0.12 -1.14 16 15 C 0.51 7.49 7.70 -10.99 -0.08 7.40 16 16 O -0.52 -10.15 15.49 5.56 0.09 -10.07 16 17 N -0.62 -6.91 3.01 -172.44 -0.52 -7.43 16 18 C 0.12 1.21 6.60 -3.60 -0.02 1.18 16 19 C 0.04 0.36 5.59 -3.70 -0.02 0.34 16 20 N -0.53 -3.92 4.60 -225.35 -1.04 -4.96 16 21 C 0.05 0.33 3.25 -66.90 -0.22 0.11 16 22 C -0.13 -0.71 7.87 -25.83 -0.20 -0.91 16 23 C -0.14 -0.68 8.09 -25.83 -0.21 -0.89 16 24 C -0.13 -0.69 6.43 -25.92 -0.17 -0.85 16 25 C 0.04 0.27 5.42 -3.68 -0.02 0.25 16 26 C 0.11 0.86 6.51 -3.58 -0.02 0.84 16 27 C -0.06 -1.14 9.69 -39.61 -0.38 -1.53 16 28 C -0.19 -4.28 9.99 -39.39 -0.39 -4.67 16 29 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 30 H 0.13 2.88 5.64 -52.48 -0.30 2.58 16 31 H 0.10 1.74 8.06 -52.49 -0.42 1.31 16 32 H 0.09 0.98 7.94 -51.93 -0.41 0.57 16 33 H 0.09 0.95 7.60 -51.93 -0.39 0.56 16 34 H 0.09 1.16 7.06 -51.93 -0.37 0.79 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.08 0.62 8.09 -51.93 -0.42 0.20 16 37 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 38 H 0.07 0.45 8.11 -51.93 -0.42 0.03 16 39 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.08 0.34 8.14 -51.92 -0.42 -0.08 16 42 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 43 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 44 H 0.09 0.48 7.70 -51.93 -0.40 0.08 16 45 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 46 H 0.09 0.47 6.58 -51.93 -0.34 0.13 16 47 H 0.09 0.57 6.02 -51.93 -0.31 0.25 16 48 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 49 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 50 H 0.12 2.50 8.06 -52.49 -0.42 2.08 16 LS Contribution 399.31 15.07 6.02 6.02 Total: -1.00 -34.48 399.31 -10.70 -45.17 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: -7.85 Total: 2.46 kcal Atomic # 6 Polarization: -13.67 SS G_CDS: -3.13 Total: -16.80 kcal Atomic # 7 Polarization: -36.73 SS G_CDS: -0.80 Total: -37.53 kcal Atomic # 8 Polarization: -15.44 SS G_CDS: 0.09 Total: -15.36 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -34.48 -10.70 -45.17 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264961716.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.383 kcal (2) G-P(sol) polarization free energy of solvation -34.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds