Wall clock time and date at job start Wed Apr 1 2020 03:49:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86799 * 119.99889 * 2 1 4 4 H 1.48496 * 109.47150 * 269.99939 * 3 2 1 5 5 H 1.48503 * 109.47111 * 30.00149 * 3 2 1 6 6 H 1.48508 * 109.47183 * 149.99636 * 3 2 1 7 7 C 1.38656 * 120.00117 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00225 * 179.97438 * 7 2 1 9 9 O 1.34836 * 119.99804 * 0.02562 * 7 2 1 10 10 C 1.35753 * 116.99499 * 185.05245 * 9 7 2 11 11 C 1.38868 * 120.07385 * 354.47001 * 10 9 7 12 12 C 1.38099 * 119.93534 * 180.02562 * 11 10 9 13 13 C 1.38308 * 120.06484 * 0.02562 * 12 11 10 14 14 C 1.50695 * 119.92946 * 179.97438 * 13 12 11 15 15 C 1.50700 * 109.47350 * 90.00024 * 14 13 12 16 16 O 1.21280 * 119.99920 * 359.97438 * 15 14 13 17 17 N 1.34774 * 120.00269 * 179.97438 * 15 14 13 18 18 C 1.47078 * 120.88321 * 179.97438 * 17 15 14 19 19 C 1.53238 * 108.52217 * 128.79462 * 18 17 15 20 20 N 1.46898 * 109.33887 * 53.82970 * 19 18 17 21 21 C 1.46904 * 110.99624 * 172.74707 * 20 19 18 22 22 C 1.53775 * 113.61608 * 274.13508 * 21 20 19 23 23 C 1.53952 * 87.02210 * 220.05219 * 22 21 20 24 24 C 1.53778 * 87.11233 * 25.36164 * 23 22 21 25 25 C 1.46898 * 111.27061 * 296.89184 * 20 19 18 26 26 C 1.47086 * 120.88191 * 359.97438 * 17 15 14 27 27 C 1.38297 * 120.13937 * 0.25078 * 13 12 11 28 28 C 1.38105 * 120.06953 * 359.45594 * 27 13 12 29 29 H 0.96990 * 119.99768 * 0.02562 * 1 2 3 30 30 H 1.08008 * 120.03206 * 359.97438 * 11 10 9 31 31 H 1.07998 * 119.96920 * 179.97438 * 12 11 10 32 32 H 1.08998 * 109.47010 * 329.99784 * 14 13 12 33 33 H 1.09005 * 109.47064 * 209.99694 * 14 13 12 34 34 H 1.09000 * 109.63049 * 9.07945 * 18 17 15 35 35 H 1.09006 * 109.62827 * 248.50618 * 18 17 15 36 36 H 1.09001 * 109.49070 * 173.79053 * 19 18 17 37 37 H 1.08996 * 109.49448 * 293.86991 * 19 18 17 38 38 H 1.09003 * 112.85024 * 45.33616 * 21 20 19 39 39 H 1.09005 * 113.61684 * 334.56495 * 22 21 20 40 40 H 1.08996 * 113.61908 * 105.47178 * 22 21 20 41 41 H 1.09008 * 113.53651 * 270.81293 * 23 22 21 42 42 H 1.09002 * 113.74805 * 139.94488 * 23 22 21 43 43 H 1.08999 * 113.61812 * 220.09554 * 24 23 22 44 44 H 1.09001 * 113.61604 * 89.18605 * 24 23 22 45 45 H 1.08992 * 109.49497 * 303.14954 * 25 20 19 46 46 H 1.09000 * 109.51579 * 183.07824 * 25 20 19 47 47 H 1.09007 * 109.62583 * 350.91674 * 26 17 15 48 48 H 1.08993 * 109.62873 * 111.49325 * 26 17 15 49 49 H 1.07996 * 119.96821 * 179.70721 * 27 13 12 50 50 H 1.07996 * 120.03795 * 180.27047 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4971 2.0464 -1.4000 5 1 1.4470 2.6527 0.7001 6 1 3.5472 1.4402 0.7001 7 6 2.0089 -1.2008 0.0005 8 1 3.0889 -1.2008 0.0001 9 8 1.3347 -2.3685 0.0005 10 6 2.0701 -3.5046 0.1076 11 6 3.4571 -3.4395 0.0952 12 6 4.2024 -4.5970 0.2038 13 6 3.5686 -5.8204 0.3242 14 6 4.3848 -7.0817 0.4419 15 6 4.6631 -7.3662 1.8954 16 8 4.2407 -6.6181 2.7515 17 7 5.3814 -8.4519 2.2441 18 6 5.6651 -8.7478 3.6566 19 6 5.2670 -10.2004 3.9392 20 7 5.9337 -11.0841 2.9735 21 6 5.7160 -12.4962 3.3148 22 6 6.7312 -13.0483 4.3293 23 6 6.7431 -14.3407 3.4928 24 6 6.3179 -13.4765 2.2941 25 6 5.4947 -10.8007 1.6005 26 6 5.9026 -9.3725 1.2221 27 6 2.1873 -5.8892 0.3312 28 6 1.4365 -4.7346 0.2290 29 1 -0.4849 0.8400 -0.0004 30 1 3.9527 -2.4845 -0.0001 31 1 5.2812 -4.5471 0.1938 32 1 5.3274 -6.9555 -0.0906 33 1 3.8311 -7.9146 0.0083 34 1 5.0868 -8.0790 4.2941 35 1 6.7292 -8.6151 3.8520 36 1 5.5716 -10.4708 4.9502 37 1 4.1865 -10.3066 3.8437 38 1 4.6794 -12.7148 3.5713 39 1 7.6836 -12.5180 4.3268 40 1 6.3210 -13.1790 5.3306 41 1 5.9877 -15.0645 3.7992 42 1 7.7332 -14.7832 3.3827 43 1 5.5742 -13.9522 1.6547 44 1 7.1568 -13.0633 1.7342 45 1 4.4110 -10.8985 1.5376 46 1 5.9640 -11.5065 0.9152 47 1 5.4812 -9.1167 0.2499 48 1 6.9894 -9.2997 1.1838 49 1 1.6953 -6.8464 0.4206 50 1 0.3579 -4.7884 0.2389 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264961716.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:49:48 Heat of formation + Delta-G solvation = -24.900336 kcal Electronic energy + Delta-G solvation = -29326.825643 eV Core-core repulsion = 25319.636493 eV Total energy + Delta-G solvation = -4007.189150 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.43438 -40.71850 -40.03598 -38.37269 -37.68593 -34.71426 -34.38716 -33.06267 -31.99476 -31.77498 -28.98657 -27.83319 -26.93330 -26.60950 -24.64112 -24.31997 -23.64469 -22.80111 -21.80336 -20.22392 -19.93246 -19.80790 -18.83316 -18.31271 -17.04006 -16.86029 -16.75272 -16.35872 -16.29774 -16.07628 -15.91884 -15.79183 -15.51385 -15.32484 -15.02096 -14.59586 -14.44844 -14.30777 -14.09567 -13.87704 -13.58976 -13.49740 -13.26351 -12.98225 -12.81406 -12.70737 -12.50721 -12.46425 -12.40339 -12.27416 -12.18309 -12.15349 -12.09479 -11.59458 -11.32880 -11.18536 -11.06528 -10.88258 -10.70846 -9.78466 -9.76522 -9.27398 -8.90547 -8.47661 -6.15957 0.60567 0.66300 1.33538 1.43218 1.51677 1.68585 2.01629 2.17460 2.81551 2.90061 3.14871 3.51557 3.60764 3.69958 3.82550 3.86284 3.97103 4.01304 4.03610 4.06587 4.12179 4.18507 4.24973 4.34120 4.42163 4.46664 4.53849 4.59094 4.63871 4.67663 4.76714 4.79149 4.82193 4.86589 4.92724 4.98476 5.06420 5.08122 5.10498 5.13300 5.14184 5.29498 5.36400 5.49577 5.51351 5.57513 5.70980 5.76960 6.02402 6.03258 6.12477 6.21773 6.45914 6.96784 7.24934 7.77901 8.75782 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.034286 B = 0.001744 C = 0.001726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.474099 B =16052.413338 C =16221.592581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.024 4.024 3 Si 1.020 2.980 4 H -0.260 1.260 5 H -0.270 1.270 6 H -0.255 1.255 7 C -0.415 4.415 8 H 0.100 0.900 9 O -0.234 6.234 10 C 0.112 3.888 11 C -0.244 4.244 12 C -0.060 4.060 13 C -0.145 4.145 14 C -0.075 4.075 15 C 0.510 3.490 16 O -0.583 6.583 17 N -0.616 5.616 18 C 0.116 3.884 19 C 0.052 3.948 20 N -0.527 5.527 21 C 0.046 3.954 22 C -0.125 4.125 23 C -0.139 4.139 24 C -0.126 4.126 25 C 0.039 3.961 26 C 0.107 3.893 27 C -0.058 4.058 28 C -0.206 4.206 29 H 0.273 0.727 30 H 0.118 0.882 31 H 0.138 0.862 32 H 0.129 0.871 33 H 0.128 0.872 34 H 0.069 0.931 35 H 0.080 0.920 36 H 0.094 0.906 37 H 0.023 0.977 38 H 0.058 0.942 39 H 0.086 0.914 40 H 0.063 0.937 41 H 0.082 0.918 42 H 0.076 0.924 43 H 0.071 0.929 44 H 0.093 0.907 45 H 0.030 0.970 46 H 0.110 0.890 47 H 0.114 0.886 48 H 0.088 0.912 49 H 0.144 0.856 50 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.078 -30.619 3.047 35.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.221 4.221 3 Si 0.839 3.161 4 H -0.184 1.184 5 H -0.195 1.195 6 H -0.179 1.179 7 C -0.491 4.491 8 H 0.117 0.883 9 O -0.140 6.140 10 C 0.062 3.938 11 C -0.263 4.263 12 C -0.078 4.078 13 C -0.146 4.146 14 C -0.114 4.114 15 C 0.300 3.700 16 O -0.462 6.462 17 N -0.350 5.350 18 C -0.007 4.007 19 C -0.077 4.077 20 N -0.252 5.252 21 C -0.062 4.062 22 C -0.163 4.163 23 C -0.177 4.177 24 C -0.164 4.164 25 C -0.089 4.089 26 C -0.015 4.015 27 C -0.076 4.076 28 C -0.225 4.225 29 H 0.082 0.918 30 H 0.136 0.864 31 H 0.156 0.844 32 H 0.147 0.853 33 H 0.146 0.854 34 H 0.088 0.912 35 H 0.098 0.902 36 H 0.112 0.888 37 H 0.041 0.959 38 H 0.076 0.924 39 H 0.104 0.896 40 H 0.081 0.919 41 H 0.100 0.900 42 H 0.095 0.905 43 H 0.089 0.911 44 H 0.112 0.888 45 H 0.048 0.952 46 H 0.128 0.872 47 H 0.132 0.868 48 H 0.107 0.893 49 H 0.162 0.838 50 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 17.946 -29.965 3.499 35.102 hybrid contribution -1.203 1.069 0.322 1.642 sum 16.743 -28.895 3.821 33.613 Atomic orbital electron populations 1.70189 1.08019 1.28777 1.48955 1.26619 0.96900 1.02755 0.95840 0.84573 0.77683 0.74447 0.79390 1.18424 1.19510 1.17923 1.21831 0.92501 0.81516 1.53275 0.88259 1.83939 1.35949 1.12589 1.81568 1.19927 0.91655 0.87966 0.94255 1.21230 0.93126 1.00008 1.11908 1.20927 0.99691 0.91117 0.96033 1.19249 0.93317 0.94535 1.07488 1.20554 1.02483 0.96274 0.92118 1.21249 0.76713 0.79851 0.92170 1.90737 1.52833 1.48950 1.53658 1.48314 1.53350 1.25222 1.08117 1.21617 1.01451 0.95378 0.82275 1.22331 0.95833 0.91960 0.97543 1.62240 1.57247 1.03526 1.02189 1.23282 0.97490 0.86395 0.99011 1.22975 0.99525 0.96533 0.97274 1.22746 1.02358 0.96136 0.96449 1.22999 1.01039 0.95952 0.96381 1.22545 0.98464 0.97156 0.90738 1.22158 1.00643 0.87218 0.91449 1.20847 0.93529 0.96866 0.96373 1.20434 0.99873 0.90695 1.11539 0.91839 0.86430 0.84410 0.85319 0.85378 0.91224 0.90171 0.88782 0.95858 0.92377 0.89580 0.91852 0.89953 0.90487 0.91062 0.88848 0.95181 0.87168 0.86830 0.89338 0.83794 0.87003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -58.36 13.67 21.61 0.30 -58.06 16 2 C -0.02 -1.41 5.49 84.83 0.47 -0.95 16 3 Si 1.02 44.48 29.55 68.60 2.03 46.51 16 4 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 5 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 6 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 7 C -0.42 -25.33 9.49 67.92 0.64 -24.69 16 8 H 0.10 5.60 5.20 -2.91 -0.02 5.58 16 9 O -0.23 -14.82 9.76 -22.83 -0.22 -15.04 16 10 C 0.11 5.98 6.65 22.58 0.15 6.13 16 11 C -0.24 -11.42 9.17 22.39 0.21 -11.21 16 12 C -0.06 -2.22 9.69 22.25 0.22 -2.00 16 13 C -0.14 -4.76 4.38 -19.84 -0.09 -4.85 16 14 C -0.08 -1.58 4.19 29.10 0.12 -1.46 16 15 C 0.51 13.38 7.70 87.66 0.68 14.06 16 16 O -0.58 -22.19 15.49 -3.03 -0.05 -22.24 16 17 N -0.62 -11.70 3.01 -817.86 -2.46 -14.16 16 18 C 0.12 2.21 6.60 86.35 0.57 2.78 16 19 C 0.05 0.79 5.59 86.38 0.48 1.28 16 20 N -0.53 -6.38 4.60 -866.88 -3.99 -10.37 16 21 C 0.05 0.48 3.25 45.44 0.15 0.62 16 22 C -0.13 -1.15 7.87 31.18 0.25 -0.90 16 23 C -0.14 -0.97 8.09 31.18 0.25 -0.72 16 24 C -0.13 -0.92 6.43 31.12 0.20 -0.72 16 25 C 0.04 0.39 5.42 86.40 0.47 0.86 16 26 C 0.11 1.13 6.51 86.36 0.56 1.69 16 27 C -0.06 -2.11 9.69 22.25 0.22 -1.90 16 28 C -0.21 -9.49 9.99 22.39 0.22 -9.26 16 29 H 0.27 15.77 8.31 -92.72 -0.77 15.00 16 30 H 0.12 5.58 5.64 -2.91 -0.02 5.56 16 31 H 0.14 4.14 8.06 -2.91 -0.02 4.12 16 32 H 0.13 1.88 7.94 -2.39 -0.02 1.86 16 33 H 0.13 1.85 7.60 -2.38 -0.02 1.83 16 34 H 0.07 1.71 7.06 -2.39 -0.02 1.69 16 35 H 0.08 1.39 8.14 -2.38 -0.02 1.37 16 36 H 0.09 1.25 8.09 -2.39 -0.02 1.23 16 37 H 0.02 0.42 8.14 -2.39 -0.02 0.40 16 38 H 0.06 0.70 8.11 -2.39 -0.02 0.68 16 39 H 0.09 0.89 8.14 -2.38 -0.02 0.87 16 40 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 41 H 0.08 0.52 8.14 -2.38 -0.02 0.51 16 42 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 43 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 44 H 0.09 0.65 7.70 -2.39 -0.02 0.63 16 45 H 0.03 0.37 8.14 -2.39 -0.02 0.35 16 46 H 0.11 0.66 6.58 -2.39 -0.02 0.65 16 47 H 0.11 0.71 6.02 -2.38 -0.01 0.69 16 48 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 49 H 0.14 4.12 8.06 -2.91 -0.02 4.09 16 50 H 0.11 5.08 8.06 -2.91 -0.02 5.06 16 Total: -1.00 -82.77 399.31 2.29 -80.48 By element: Atomic # 1 Polarization: 23.19 SS G_CDS: 0.93 Total: 24.12 kcal Atomic # 6 Polarization: -37.00 SS G_CDS: 5.76 Total: -31.24 kcal Atomic # 7 Polarization: -76.44 SS G_CDS: -6.16 Total: -82.59 kcal Atomic # 8 Polarization: -37.01 SS G_CDS: -0.27 Total: -37.28 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Total: -82.77 2.29 -80.48 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264961716.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.580 kcal (2) G-P(sol) polarization free energy of solvation -82.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds