Wall clock time and date at job start Wed Apr 1 2020 02:41:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 120.00144 * 2 1 4 4 H 1.48504 * 109.47025 * 240.00525 * 3 2 1 5 5 H 1.48499 * 109.46850 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47416 * 120.00107 * 3 2 1 7 7 C 1.38813 * 119.99869 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99822 * 169.37121 * 7 2 1 9 9 N 1.36943 * 119.99644 * 349.35938 * 7 2 1 10 10 C 1.46926 * 120.62328 * 148.26917 * 9 7 2 11 11 C 1.53192 * 108.77457 * 126.41457 * 10 9 7 12 12 C 1.53041 * 109.34088 * 54.61574 * 11 10 9 13 13 C 1.53039 * 109.53798 * 298.68509 * 12 11 10 14 14 H 1.09000 * 109.49848 * 301.34679 * 13 12 11 15 15 C 1.53005 * 109.49908 * 181.28249 * 13 12 11 16 16 N 1.46499 * 109.47360 * 175.06488 * 15 13 12 17 17 C 1.34771 * 120.00094 * 180.02562 * 16 15 13 18 18 O 1.21280 * 120.00078 * 4.56732 * 17 16 15 19 19 C 1.50699 * 119.99945 * 184.57607 * 17 16 15 20 20 H 1.08997 * 109.39964 * 327.14280 * 19 17 16 21 21 C 1.53069 * 109.43449 * 207.25452 * 19 17 16 22 22 C 1.53404 * 108.34433 * 191.74342 * 21 19 17 23 23 O 1.42904 * 108.33451 * 64.67656 * 22 21 19 24 24 C 1.35847 * 117.87133 * 310.79960 * 23 22 21 25 25 C 1.39149 * 118.49420 * 197.02520 * 24 23 22 26 26 C 1.37967 * 120.21040 * 180.41343 * 25 24 23 27 27 C 1.38286 * 119.95976 * 0.02562 * 26 25 24 28 28 C 1.38104 * 119.98582 * 359.91566 * 27 26 25 29 29 C 1.38367 * 121.80584 * 17.31044 * 24 23 22 30 30 C 1.46916 * 120.63260 * 328.29041 * 9 7 2 31 31 H 0.97009 * 120.00056 * 359.97438 * 1 2 3 32 32 H 1.08996 * 109.58372 * 246.19654 * 10 9 7 33 33 H 1.08996 * 109.59200 * 6.48454 * 10 9 7 34 34 H 1.09002 * 109.49787 * 174.58272 * 11 10 9 35 35 H 1.09005 * 109.49672 * 294.64832 * 11 10 9 36 36 H 1.08995 * 109.48825 * 178.64968 * 12 11 10 37 37 H 1.08999 * 109.43429 * 58.68751 * 12 11 10 38 38 H 1.08998 * 109.46725 * 55.06485 * 15 13 12 39 39 H 1.09002 * 109.46860 * 295.06548 * 15 13 12 40 40 H 0.96998 * 120.00011 * 0.02562 * 16 15 13 41 41 H 1.08998 * 109.69628 * 311.46701 * 21 19 17 42 42 H 1.09002 * 109.69545 * 72.01989 * 21 19 17 43 43 H 1.09006 * 109.68565 * 184.44281 * 22 21 19 44 44 H 1.09000 * 109.68503 * 305.00098 * 22 21 19 45 45 H 1.07997 * 119.89348 * 0.43656 * 25 24 23 46 46 H 1.08001 * 120.02163 * 179.97438 * 26 25 24 47 47 H 1.08005 * 120.01002 * 179.97438 * 27 26 25 48 48 H 1.08002 * 119.84459 * 180.02562 * 28 27 26 49 49 H 1.09000 * 109.58938 * 113.80045 * 30 9 7 50 50 H 1.09001 * 109.70897 * 353.44092 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2126 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0763 -1.2101 -0.1731 9 7 1.3431 -2.3780 0.2179 10 6 1.7954 -3.6240 -0.4157 11 6 1.9886 -4.6874 0.6700 12 6 0.6969 -4.8264 1.4788 13 6 0.3729 -3.4942 2.1588 14 1 1.2004 -3.2058 2.8070 15 6 -0.9012 -3.6431 2.9928 16 7 -1.1459 -2.4045 3.7360 17 6 -2.2201 -2.3044 4.5437 18 8 -2.9380 -3.2659 4.7201 19 6 -2.5294 -0.9976 5.2276 20 1 -1.5981 -0.4792 5.4559 21 6 -3.2919 -1.2705 6.5265 22 6 -3.8487 0.0603 7.0482 23 8 -4.8064 0.5472 6.1059 24 6 -4.4475 0.5824 4.7962 25 6 -5.1959 1.3665 3.9237 26 6 -4.8679 1.4216 2.5847 27 6 -3.7926 0.6953 2.1067 28 6 -3.0469 -0.0830 2.9700 29 6 -3.3701 -0.1406 4.3156 30 6 0.1613 -2.4173 1.0899 31 1 -0.4851 0.8401 0.0004 32 1 1.0456 -3.9635 -1.1303 33 1 2.7395 -3.4499 -0.9317 34 1 2.2310 -5.6427 0.2045 35 1 2.8017 -4.3883 1.3315 36 1 0.8238 -5.5994 2.2367 37 1 -0.1204 -5.1022 0.8124 38 1 -0.7823 -4.4697 3.6933 39 1 -1.7456 -3.8441 2.3335 40 1 -0.5349 -1.6566 3.6467 41 1 -4.1125 -1.9612 6.3326 42 1 -2.6163 -1.7010 7.2656 43 1 -4.3292 -0.0961 8.0141 44 1 -3.0382 0.7815 7.1533 45 1 -6.0359 1.9341 4.2959 46 1 -5.4512 2.0308 1.9101 47 1 -3.5354 0.7375 1.0585 48 1 -2.2072 -0.6490 2.5943 49 1 -0.7217 -2.6584 0.4981 50 1 0.0261 -1.4479 1.5697 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000266057600.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:41:38 Heat of formation + Delta-G solvation = -41.785962 kcal Electronic energy + Delta-G solvation = -31446.469877 eV Core-core repulsion = 27438.548511 eV Total energy + Delta-G solvation = -4007.921366 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.01911 -39.25970 -37.77288 -37.40382 -34.72194 -34.21002 -33.08410 -31.02112 -30.51263 -30.06910 -29.84075 -26.87346 -25.38054 -24.99776 -23.65842 -22.48886 -22.18131 -21.00952 -20.58311 -19.73086 -19.03449 -17.89319 -17.04803 -16.69094 -16.60379 -16.11525 -15.67088 -15.19230 -14.90103 -14.68556 -14.14739 -14.02672 -13.92273 -13.71109 -13.63311 -13.40558 -13.23736 -13.08762 -12.90681 -12.45895 -12.32019 -12.20364 -12.10982 -11.87833 -11.44018 -11.27476 -11.02731 -11.00295 -10.89018 -10.78831 -10.60034 -10.55214 -10.27806 -10.22238 -9.96931 -9.81498 -9.56393 -9.48438 -8.77486 -8.67985 -8.54666 -8.06493 -6.66335 -5.85117 -3.32867 1.37731 1.57336 2.76976 3.22677 3.32014 3.38410 3.38994 3.39242 3.90968 4.42202 4.44010 4.58156 4.66663 4.85920 5.04905 5.10192 5.18998 5.20220 5.29523 5.29753 5.39055 5.50443 5.52871 5.54727 5.55691 5.56833 5.64803 5.76287 5.86260 5.94247 6.00696 6.07534 6.13700 6.25424 6.26807 6.37614 6.40387 6.46626 6.59539 6.61986 6.68829 6.76110 6.78578 6.82376 6.89119 6.97930 7.26121 7.45857 7.55986 7.72117 7.72626 8.38756 8.40904 9.16362 9.77024 10.36506 11.22403 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.010259 B = 0.004040 C = 0.003210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2728.527199 B = 6928.513758 C = 8720.094768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.008 3.992 3 Si 0.900 3.100 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.254 4.254 8 H 0.062 0.938 9 N -0.592 5.592 10 C 0.143 3.857 11 C -0.133 4.133 12 C -0.100 4.100 13 C -0.129 4.129 14 H 0.069 0.931 15 C 0.130 3.870 16 N -0.718 5.718 17 C 0.525 3.475 18 O -0.543 6.543 19 C -0.063 4.063 20 H 0.101 0.899 21 C -0.144 4.144 22 C 0.064 3.936 23 O -0.318 6.318 24 C 0.135 3.865 25 C -0.155 4.155 26 C -0.086 4.086 27 C -0.138 4.138 28 C -0.073 4.073 29 C -0.155 4.155 30 C 0.181 3.819 31 H 0.254 0.746 32 H 0.017 0.983 33 H 0.052 0.948 34 H 0.050 0.950 35 H 0.056 0.944 36 H 0.047 0.953 37 H 0.056 0.944 38 H 0.059 0.941 39 H 0.064 0.936 40 H 0.405 0.595 41 H 0.094 0.906 42 H 0.086 0.914 43 H 0.109 0.891 44 H 0.064 0.936 45 H 0.127 0.873 46 H 0.127 0.873 47 H 0.132 0.868 48 H 0.137 0.863 49 H 0.018 0.982 50 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.852 -0.820 10.929 12.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.191 4.191 3 Si 0.730 3.270 4 H -0.209 1.209 5 H -0.215 1.215 6 H -0.211 1.211 7 C -0.384 4.384 8 H 0.080 0.920 9 N -0.314 5.314 10 C 0.017 3.983 11 C -0.172 4.172 12 C -0.138 4.138 13 C -0.150 4.150 14 H 0.087 0.913 15 C 0.006 3.994 16 N -0.370 5.370 17 C 0.311 3.689 18 O -0.420 6.420 19 C -0.084 4.084 20 H 0.119 0.881 21 C -0.182 4.182 22 C -0.011 4.011 23 O -0.232 6.232 24 C 0.090 3.910 25 C -0.174 4.174 26 C -0.104 4.104 27 C -0.157 4.157 28 C -0.091 4.091 29 C -0.157 4.157 30 C 0.055 3.945 31 H 0.065 0.935 32 H 0.035 0.965 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.075 0.925 36 H 0.065 0.935 37 H 0.075 0.925 38 H 0.077 0.923 39 H 0.083 0.917 40 H 0.241 0.759 41 H 0.112 0.888 42 H 0.104 0.896 43 H 0.127 0.873 44 H 0.083 0.917 45 H 0.145 0.855 46 H 0.145 0.855 47 H 0.150 0.850 48 H 0.155 0.845 49 H 0.036 0.964 50 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -6.642 -1.305 11.094 12.996 hybrid contribution 1.067 1.120 -0.163 1.555 sum -5.575 -0.185 10.930 12.271 Atomic orbital electron populations 1.69956 1.05038 1.25509 1.54044 1.25122 0.95421 0.98135 1.00421 0.86414 0.78955 0.83466 0.78155 1.20891 1.21535 1.21079 1.19130 0.90840 0.83915 1.44530 0.91992 1.43964 1.32318 1.03699 1.51420 1.20937 0.97611 0.87117 0.92645 1.21989 0.97119 0.98891 0.99201 1.21326 0.98144 0.95880 0.98451 1.22176 0.95410 0.98766 0.98630 0.91285 1.21417 0.98483 0.85514 0.94001 1.46175 1.27054 1.18296 1.45461 1.20158 0.80559 0.89167 0.79043 1.90662 1.49240 1.39133 1.62969 1.20134 0.99548 0.93769 0.94968 0.88140 1.22131 1.01925 0.98409 0.95774 1.22974 0.92183 0.94501 0.91447 1.85976 1.41761 1.81322 1.14164 1.18579 0.93943 0.95057 0.83446 1.20511 1.02253 1.01637 0.92993 1.20988 0.96842 0.98301 0.94314 1.21167 0.95894 0.97892 1.00706 1.21280 0.99190 0.97168 0.91489 1.19326 0.99221 1.01862 0.95249 1.20797 0.88494 0.96147 0.89079 0.93536 0.96524 0.92933 0.93108 0.92493 0.93466 0.92498 0.92293 0.91747 0.75877 0.88793 0.89559 0.87284 0.91737 0.85473 0.85513 0.85043 0.84499 0.96363 0.89450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.86 11.07 55.49 0.61 -23.25 16 2 C 0.01 0.20 5.05 -17.43 -0.09 0.12 16 3 Si 0.90 20.62 29.57 -169.99 -5.03 15.59 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.25 -6.60 9.58 -15.06 -0.14 -6.75 16 8 H 0.06 1.60 7.85 -52.49 -0.41 1.19 16 9 N -0.59 -13.96 2.98 -172.33 -0.51 -14.47 16 10 C 0.14 2.90 6.52 -3.71 -0.02 2.87 16 11 C -0.13 -2.20 6.08 -26.61 -0.16 -2.37 16 12 C -0.10 -1.59 5.17 -26.69 -0.14 -1.73 16 13 C -0.13 -2.23 2.37 -90.49 -0.21 -2.44 16 14 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 15 C 0.13 2.08 5.07 -4.04 -0.02 2.06 16 16 N -0.72 -11.03 4.17 -60.29 -0.25 -11.28 16 17 C 0.53 8.32 6.11 -10.99 -0.07 8.25 16 18 O -0.54 -10.25 15.90 5.56 0.09 -10.16 16 19 C -0.06 -0.84 2.70 -92.85 -0.25 -1.09 16 20 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 21 C -0.14 -1.66 5.26 -26.49 -0.14 -1.80 16 22 C 0.06 0.64 7.03 37.37 0.26 0.90 16 23 O -0.32 -4.21 10.27 -19.26 -0.20 -4.41 16 24 C 0.13 1.95 6.47 -39.20 -0.25 1.70 16 25 C -0.16 -2.09 9.94 -39.34 -0.39 -2.48 16 26 C -0.09 -1.15 10.04 -39.66 -0.40 -1.55 16 27 C -0.14 -2.14 10.04 -39.61 -0.40 -2.53 16 28 C -0.07 -1.19 9.10 -39.53 -0.36 -1.55 16 29 C -0.16 -2.33 5.43 -104.44 -0.57 -2.90 16 30 C 0.18 3.90 4.33 -3.71 -0.02 3.89 16 31 H 0.25 6.58 8.31 -40.82 -0.34 6.24 16 32 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.05 1.05 7.93 -51.93 -0.41 0.64 16 34 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 36 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.41 6.03 7.46 -40.82 -0.30 5.72 16 41 H 0.09 1.28 7.44 -51.93 -0.39 0.89 16 42 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 46 H 0.13 1.35 8.06 -52.49 -0.42 0.92 16 47 H 0.13 2.03 8.06 -52.48 -0.42 1.61 16 48 H 0.14 2.40 6.22 -52.49 -0.33 2.07 16 49 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 50 H 0.09 2.03 5.34 -51.93 -0.28 1.75 16 LS Contribution 392.15 15.07 5.91 5.91 Total: -1.00 -29.98 392.15 -10.76 -40.74 By element: Atomic # 1 Polarization: 16.75 SS G_CDS: -8.02 Total: 8.73 kcal Atomic # 6 Polarization: -4.04 SS G_CDS: -3.37 Total: -7.41 kcal Atomic # 7 Polarization: -48.85 SS G_CDS: -0.15 Total: -49.00 kcal Atomic # 8 Polarization: -14.46 SS G_CDS: -0.11 Total: -14.57 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.03 Total: 15.59 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -29.98 -10.76 -40.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266057600.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.046 kcal (2) G-P(sol) polarization free energy of solvation -29.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds